Wall clock time and date at job start Mon Mar 30 2020 05:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38345 * 119.99548 * 2 1 4 4 C 1.37742 * 119.50296 * 180.45177 * 3 2 1 5 5 C 1.39628 * 120.63303 * 359.41895 * 4 3 2 6 6 C 1.38177 * 119.97848 * 0.15113 * 5 4 3 7 7 C 1.37760 * 119.99429 * 179.97438 * 2 1 3 8 8 C 1.50704 * 119.46887 * 0.10444 * 7 2 1 9 9 C 1.50046 * 124.78415 * 180.70959 * 6 5 4 10 10 C 1.51867 * 113.59358 * 337.51199 * 9 6 5 11 11 H 1.09000 * 109.64764 * 300.44669 * 10 9 6 12 12 C 1.50704 * 109.55370 * 180.18636 * 10 9 6 13 13 H 1.07993 * 119.99950 * 0.52136 * 12 10 9 14 14 C 1.37880 * 119.99894 * 180.52248 * 12 10 9 15 15 N 1.31516 * 120.00082 * 0.02562 * 14 12 10 16 16 Si 1.86799 * 119.99831 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.46860 * 90.00169 * 16 14 12 18 18 H 1.48499 * 109.46829 * 209.99818 * 16 14 12 19 19 H 1.48500 * 109.47289 * 330.00064 * 16 14 12 20 20 C 1.53541 * 108.96220 * 60.34599 * 10 9 6 21 21 S 1.76460 * 117.71859 * 179.87870 * 5 4 3 22 22 H 1.08993 * 109.47122 * 270.02489 * 1 2 3 23 23 H 1.09001 * 109.46441 * 30.02551 * 1 2 3 24 24 H 1.08997 * 109.47251 * 150.01890 * 1 2 3 25 25 H 1.07996 * 120.24639 * 0.23841 * 3 2 1 26 26 H 1.08000 * 119.67810 * 179.69969 * 4 3 2 27 27 H 1.09000 * 109.46890 * 264.48888 * 8 7 2 28 28 H 1.08999 * 109.47032 * 24.47959 * 8 7 2 29 29 H 1.09001 * 109.47402 * 144.48487 * 8 7 2 30 30 H 1.09002 * 108.66193 * 216.44256 * 9 6 5 31 31 H 1.09001 * 108.54539 * 98.49858 * 9 6 5 32 32 H 0.96996 * 120.00158 * 180.02562 * 15 14 12 33 33 H 1.08995 * 109.89603 * 167.86186 * 20 10 9 34 34 H 1.09002 * 109.89059 * 46.74640 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1986 1.1982 0.0000 4 6 3.5760 1.1863 -0.0095 5 6 4.2771 -0.0211 -0.0068 6 6 3.5888 -1.2192 0.0022 7 6 2.1957 -1.1931 0.0005 8 6 1.4300 -2.4911 -0.0013 9 6 4.2309 -2.5752 0.0211 10 6 5.6564 -2.5801 -0.5025 11 1 5.6699 -2.2229 -1.5322 12 6 6.2093 -3.9810 -0.4473 13 1 5.5947 -4.7899 -0.0811 14 6 7.4997 -4.2297 -0.8644 15 7 8.2483 -3.2445 -1.3099 16 14 8.1847 -5.9663 -0.7967 17 1 7.9010 -6.6606 -2.0783 18 1 9.6525 -5.9112 -0.5779 19 1 7.5452 -6.7075 0.3200 20 6 6.5129 -1.6547 0.3737 21 16 6.0401 0.0534 -0.0228 22 1 -0.3633 0.0004 1.0276 23 1 -0.3632 0.8898 -0.5143 24 1 -0.3633 -0.8901 -0.5135 25 1 1.6626 2.1357 0.0039 26 1 4.1187 2.1200 -0.0144 27 1 1.3288 -2.8547 1.0213 28 1 0.4405 -2.3286 -0.4286 29 1 1.9667 -3.2288 -0.5978 30 1 3.6331 -3.2527 -0.5886 31 1 4.2350 -2.9426 1.0473 32 1 9.1560 -3.4195 -1.6037 33 1 7.5692 -1.8079 0.1529 34 1 6.3199 -1.8581 1.4270 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261103496.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:53 Heat of formation + Delta-G solvation = 2.310078 kcal Electronic energy + Delta-G solvation = -15816.591426 eV Core-core repulsion = 13418.327277 eV Total energy + Delta-G solvation = -2398.264149 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.39636 -35.56182 -33.05526 -32.70878 -30.54644 -27.32667 -26.31439 -25.90339 -25.06711 -21.35863 -20.60240 -19.10683 -16.74726 -16.29248 -15.64347 -14.81290 -14.52741 -14.37822 -13.97796 -13.19324 -12.84400 -12.75786 -12.64293 -12.35139 -12.07022 -11.96656 -11.74728 -11.66556 -11.10492 -10.88723 -10.79635 -10.42881 -10.38337 -10.24367 -9.95521 -9.34875 -8.99479 -8.59110 -8.46287 -8.08657 -6.57672 -6.14023 -4.24028 1.67667 1.78108 2.55695 3.22428 3.30404 3.32700 3.46083 4.04837 4.32213 5.08929 5.13441 5.16592 5.32826 5.38014 5.57515 5.64954 5.72448 5.85936 5.93448 6.01976 6.04127 6.17149 6.28129 6.40759 6.46069 6.58163 6.70770 6.75745 6.85992 6.94386 7.12163 7.37547 7.43152 7.68514 7.82645 8.18935 8.79832 9.42254 10.90789 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.031673 B = 0.006914 C = 0.005799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.820318 B = 4049.018524 C = 4827.475031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.105 4.105 3 C -0.116 4.116 4 C -0.111 4.111 5 C -0.061 4.061 6 C -0.068 4.068 7 C -0.081 4.081 8 C -0.122 4.122 9 C -0.082 4.082 10 C 0.049 3.951 11 H 0.042 0.958 12 C -0.512 4.512 13 H 0.061 0.939 14 C 0.063 3.937 15 N -0.885 5.885 16 Si 0.896 3.104 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.273 1.273 20 C -0.071 4.071 21 S -0.183 6.183 22 H 0.063 0.937 23 H 0.059 0.941 24 H 0.067 0.933 25 H 0.118 0.882 26 H 0.119 0.881 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.265 0.735 33 H 0.138 0.862 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.147 5.009 2.937 12.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.108 4.108 3 C -0.135 4.135 4 C -0.135 4.135 5 C -0.174 4.174 6 C -0.075 4.075 7 C -0.083 4.083 8 C -0.178 4.178 9 C -0.119 4.119 10 C 0.029 3.971 11 H 0.060 0.940 12 C -0.552 4.552 13 H 0.079 0.921 14 C -0.140 4.140 15 N -0.523 5.523 16 Si 0.724 3.276 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.198 1.198 20 C -0.219 4.219 21 S 0.063 5.937 22 H 0.082 0.918 23 H 0.078 0.922 24 H 0.086 0.914 25 H 0.136 0.864 26 H 0.137 0.863 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.155 0.845 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.067 5.964 2.676 12.003 hybrid contribution -0.269 -1.801 0.264 1.840 sum -10.336 4.163 2.939 11.524 Atomic orbital electron populations 1.20786 0.91844 1.02292 1.01729 1.19495 0.95442 0.92754 1.03061 1.20705 0.93534 0.97077 1.02219 1.20814 0.93888 0.96275 1.02502 1.21472 0.97382 0.94998 1.03575 1.19881 0.92898 0.95029 0.99648 1.19790 0.92899 0.94747 1.00865 1.20992 0.99503 0.95036 1.02243 1.20541 0.98786 0.91124 1.01443 1.18718 0.87949 0.95300 0.95161 0.93958 1.21097 0.98339 0.92483 1.43288 0.92100 1.25019 0.96997 0.97325 0.94651 1.69835 1.09148 1.31059 1.42293 0.86519 0.78175 0.84389 0.78545 1.20508 1.21091 1.19800 1.24299 1.08425 0.87891 1.01256 1.85115 0.98165 1.22049 1.88343 0.91784 0.92154 0.91394 0.86398 0.86290 0.91460 0.91650 0.90726 0.90700 0.91658 0.92541 0.84484 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 9.58 36.01 0.34 -0.88 16 2 C -0.10 -1.57 5.87 -104.76 -0.61 -2.19 16 3 C -0.12 -1.75 9.72 -39.72 -0.39 -2.13 16 4 C -0.11 -1.93 9.65 -39.24 -0.38 -2.30 16 5 C -0.06 -1.23 6.05 -39.09 -0.24 -1.47 16 6 C -0.07 -1.35 5.78 -104.55 -0.60 -1.95 16 7 C -0.08 -1.36 5.89 -104.39 -0.61 -1.98 16 8 C -0.12 -1.69 9.02 36.01 0.32 -1.36 16 9 C -0.08 -1.72 3.94 -28.77 -0.11 -1.83 16 10 C 0.05 1.19 2.01 -92.07 -0.19 1.00 16 11 H 0.04 1.16 8.03 -51.93 -0.42 0.74 16 12 C -0.51 -13.40 8.56 -34.44 -0.29 -13.70 16 13 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 14 C 0.06 1.65 5.26 -17.82 -0.09 1.56 16 15 N -0.89 -24.39 11.33 55.43 0.63 -23.76 16 16 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 18 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 20 C -0.07 -1.68 5.69 37.44 0.21 -1.47 16 21 S -0.18 -3.93 21.99 -107.50 -2.36 -6.29 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 23 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 24 H 0.07 0.70 5.83 -51.93 -0.30 0.40 16 25 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 26 H 0.12 1.88 8.05 -52.49 -0.42 1.45 16 27 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.06 0.76 5.67 -51.93 -0.29 0.46 16 29 H 0.07 1.08 5.93 -51.93 -0.31 0.77 16 30 H 0.07 1.50 5.83 -51.93 -0.30 1.19 16 31 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 32 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 33 H 0.14 3.57 5.91 -51.93 -0.31 3.27 16 34 H 0.06 1.36 8.08 -51.93 -0.42 0.94 16 LS Contribution 281.13 15.07 4.24 4.24 Total: -1.00 -27.53 281.13 -9.59 -37.11 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -4.43 Total: 1.99 kcal Atomic # 6 Polarization: -26.07 SS G_CDS: -2.64 Total: -28.70 kcal Atomic # 7 Polarization: -24.39 SS G_CDS: 0.63 Total: -23.76 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 16 Polarization: -3.93 SS G_CDS: -2.36 Total: -6.29 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -27.53 -9.59 -37.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261103496.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.420 kcal (2) G-P(sol) polarization free energy of solvation -27.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds