Wall clock time and date at job start Mon Mar 30 2020 05:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38345 * 119.99548 * 2 1 4 4 C 1.37742 * 119.50296 * 180.45177 * 3 2 1 5 5 C 1.39628 * 120.63303 * 359.41895 * 4 3 2 6 6 C 1.38177 * 119.97848 * 0.15113 * 5 4 3 7 7 C 1.37760 * 119.99429 * 179.97438 * 2 1 3 8 8 C 1.50704 * 119.46887 * 0.10444 * 7 2 1 9 9 C 1.50046 * 124.78415 * 180.70959 * 6 5 4 10 10 C 1.51867 * 113.59358 * 337.51199 * 9 6 5 11 11 H 1.09000 * 109.64764 * 300.44669 * 10 9 6 12 12 C 1.50704 * 109.55370 * 180.18636 * 10 9 6 13 13 H 1.07993 * 119.99950 * 0.52136 * 12 10 9 14 14 C 1.37880 * 119.99894 * 180.52248 * 12 10 9 15 15 N 1.31516 * 120.00082 * 0.02562 * 14 12 10 16 16 Si 1.86799 * 119.99831 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.46860 * 90.00169 * 16 14 12 18 18 H 1.48499 * 109.46829 * 209.99818 * 16 14 12 19 19 H 1.48500 * 109.47289 * 330.00064 * 16 14 12 20 20 C 1.53541 * 108.96220 * 60.34599 * 10 9 6 21 21 S 1.76460 * 117.71859 * 179.87870 * 5 4 3 22 22 H 1.08993 * 109.47122 * 270.02489 * 1 2 3 23 23 H 1.09001 * 109.46441 * 30.02551 * 1 2 3 24 24 H 1.08997 * 109.47251 * 150.01890 * 1 2 3 25 25 H 1.07996 * 120.24639 * 0.23841 * 3 2 1 26 26 H 1.08000 * 119.67810 * 179.69969 * 4 3 2 27 27 H 1.09000 * 109.46890 * 264.48888 * 8 7 2 28 28 H 1.08999 * 109.47032 * 24.47959 * 8 7 2 29 29 H 1.09001 * 109.47402 * 144.48487 * 8 7 2 30 30 H 1.09002 * 108.66193 * 216.44256 * 9 6 5 31 31 H 1.09001 * 108.54539 * 98.49858 * 9 6 5 32 32 H 0.96996 * 120.00158 * 180.02562 * 15 14 12 33 33 H 1.08995 * 109.89603 * 167.86186 * 20 10 9 34 34 H 1.09002 * 109.89059 * 46.74640 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1986 1.1982 0.0000 4 6 3.5760 1.1863 -0.0095 5 6 4.2771 -0.0211 -0.0068 6 6 3.5888 -1.2192 0.0022 7 6 2.1957 -1.1931 0.0005 8 6 1.4300 -2.4911 -0.0013 9 6 4.2309 -2.5752 0.0211 10 6 5.6564 -2.5801 -0.5025 11 1 5.6699 -2.2229 -1.5322 12 6 6.2093 -3.9810 -0.4473 13 1 5.5947 -4.7899 -0.0811 14 6 7.4997 -4.2297 -0.8644 15 7 8.2483 -3.2445 -1.3099 16 14 8.1847 -5.9663 -0.7967 17 1 7.9010 -6.6606 -2.0783 18 1 9.6525 -5.9112 -0.5779 19 1 7.5452 -6.7075 0.3200 20 6 6.5129 -1.6547 0.3737 21 16 6.0401 0.0534 -0.0228 22 1 -0.3633 0.0004 1.0276 23 1 -0.3632 0.8898 -0.5143 24 1 -0.3633 -0.8901 -0.5135 25 1 1.6626 2.1357 0.0039 26 1 4.1187 2.1200 -0.0144 27 1 1.3288 -2.8547 1.0213 28 1 0.4405 -2.3286 -0.4286 29 1 1.9667 -3.2288 -0.5978 30 1 3.6331 -3.2527 -0.5886 31 1 4.2350 -2.9426 1.0473 32 1 9.1560 -3.4195 -1.6037 33 1 7.5692 -1.8079 0.1529 34 1 6.3199 -1.8581 1.4270 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261103496.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:53 Heat of formation + Delta-G solvation = -10.389059 kcal Electronic energy + Delta-G solvation = -15817.142102 eV Core-core repulsion = 13418.327277 eV Total energy + Delta-G solvation = -2398.814825 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.72983 -37.31093 -34.44662 -34.27336 -32.18164 -28.55433 -27.93915 -27.32767 -26.79581 -22.99075 -21.89444 -20.73635 -18.61566 -17.86938 -17.11173 -16.49272 -16.14329 -15.82556 -15.24865 -14.72357 -14.40069 -14.28959 -13.80209 -13.64933 -13.57707 -13.36491 -13.16135 -12.88831 -12.83208 -12.67246 -12.34477 -12.18311 -11.91783 -11.74056 -11.71104 -11.10054 -10.65242 -10.56160 -10.09486 -9.43208 -8.23773 -8.13528 -6.34562 0.33975 0.44918 0.92510 1.41279 1.42640 1.52965 1.71110 2.39774 2.73438 3.11389 3.86593 3.98458 4.05235 4.25243 4.27894 4.32926 4.48784 4.62756 4.70009 4.76931 4.81766 4.86328 4.92347 4.96451 5.07937 5.09072 5.24640 5.37408 5.44026 5.48656 5.58665 5.68701 5.76873 5.82934 6.12964 6.18871 6.75396 7.35447 8.87475 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.031673 B = 0.006914 C = 0.005799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.820318 B = 4049.018524 C = 4827.475031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.097 4.097 3 C -0.107 4.107 4 C -0.119 4.119 5 C -0.090 4.090 6 C -0.096 4.096 7 C -0.090 4.090 8 C -0.120 4.120 9 C -0.071 4.071 10 C 0.050 3.950 11 H 0.002 0.998 12 C -0.530 4.530 13 H 0.064 0.936 14 C 0.015 3.985 15 N -0.915 5.915 16 Si 0.962 3.038 17 H -0.275 1.275 18 H -0.284 1.284 19 H -0.264 1.264 20 C -0.065 4.065 21 S -0.196 6.196 22 H 0.081 0.919 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.157 0.843 26 H 0.130 0.870 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.265 0.735 33 H 0.109 0.891 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.069 5.262 3.382 15.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.100 4.100 3 C -0.127 4.127 4 C -0.142 4.142 5 C -0.203 4.203 6 C -0.102 4.102 7 C -0.092 4.092 8 C -0.176 4.176 9 C -0.108 4.108 10 C 0.031 3.969 11 H 0.020 0.980 12 C -0.570 4.570 13 H 0.082 0.918 14 C -0.185 4.185 15 N -0.554 5.554 16 Si 0.787 3.213 17 H -0.201 1.201 18 H -0.209 1.209 19 H -0.189 1.189 20 C -0.213 4.213 21 S 0.048 5.952 22 H 0.099 0.901 23 H 0.099 0.901 24 H 0.097 0.903 25 H 0.175 0.825 26 H 0.148 0.852 27 H 0.096 0.904 28 H 0.112 0.888 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.127 0.873 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.018 6.215 3.125 14.760 hybrid contribution 0.505 -1.777 0.108 1.851 sum -12.514 4.437 3.233 13.665 Atomic orbital electron populations 1.20885 0.88405 1.03917 1.03281 1.20038 0.97859 0.91825 1.00229 1.21177 0.92528 0.98946 1.00016 1.21041 0.95187 0.95555 1.02405 1.21565 0.95648 0.96558 1.06492 1.19896 0.94574 0.93976 1.01778 1.20115 0.91735 0.97017 1.00300 1.21041 1.00330 0.93275 1.02952 1.20332 0.96610 0.92750 1.01060 1.18582 0.90515 0.94644 0.93198 0.98026 1.21440 0.98772 0.93426 1.43329 0.91785 1.25816 0.97301 1.01097 0.94246 1.69984 1.09328 1.33028 1.43028 0.85493 0.77348 0.79747 0.78732 1.20106 1.20929 1.18859 1.23943 1.06705 0.89756 1.00918 1.84918 1.01146 1.19834 1.89285 0.90052 0.90116 0.90302 0.82513 0.85237 0.90382 0.88770 0.91940 0.90198 0.91854 0.92616 0.87283 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.84 9.58 71.24 0.68 -1.16 16 2 C -0.10 -2.55 5.87 -19.95 -0.12 -2.66 16 3 C -0.11 -2.85 9.72 22.18 0.22 -2.63 16 4 C -0.12 -3.93 9.65 22.49 0.22 -3.71 16 5 C -0.09 -3.64 6.05 22.59 0.14 -3.51 16 6 C -0.10 -3.80 5.78 -19.82 -0.11 -3.92 16 7 C -0.09 -2.83 5.89 -19.71 -0.12 -2.95 16 8 C -0.12 -3.02 9.02 71.24 0.64 -2.37 16 9 C -0.07 -3.03 3.94 29.27 0.12 -2.92 16 10 C 0.05 2.59 2.01 -11.73 -0.02 2.57 16 11 H 0.00 0.09 8.03 -2.39 -0.02 0.07 16 12 C -0.53 -28.62 8.56 25.60 0.22 -28.41 16 13 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 14 C 0.02 0.81 5.26 84.66 0.45 1.26 16 15 N -0.91 -52.41 11.33 21.45 0.24 -52.16 16 16 Si 0.96 42.55 29.54 68.60 2.03 44.58 16 17 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 18 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 19 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 20 C -0.07 -3.25 5.69 72.16 0.41 -2.84 16 21 S -0.20 -8.81 21.99 -56.49 -1.24 -10.05 16 22 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.08 1.09 8.09 -2.39 -0.02 1.08 16 24 H 0.08 1.20 5.83 -2.39 -0.01 1.18 16 25 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 26 H 0.13 3.90 8.05 -2.91 -0.02 3.88 16 27 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.09 1.80 5.67 -2.39 -0.01 1.78 16 29 H 0.06 1.73 5.93 -2.39 -0.01 1.71 16 30 H 0.08 3.26 5.83 -2.39 -0.01 3.24 16 31 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 32 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 33 H 0.11 6.06 5.91 -2.39 -0.01 6.04 16 34 H 0.06 2.89 8.08 -2.39 -0.02 2.87 16 Total: -1.00 -61.84 281.13 4.84 -57.01 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 1.10 Total: 13.88 kcal Atomic # 6 Polarization: -55.96 SS G_CDS: 2.71 Total: -53.25 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: 0.24 Total: -52.16 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Atomic # 16 Polarization: -8.81 SS G_CDS: -1.24 Total: -10.05 kcal Total: -61.84 4.84 -57.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261103496.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.619 kcal (2) G-P(sol) polarization free energy of solvation -61.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds