Wall clock time and date at job start Mon Mar 30 2020 05:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38350 * 119.99544 * 2 1 4 4 C 1.37738 * 119.51449 * 179.97438 * 3 2 1 5 5 C 1.50698 * 119.68815 * 179.74218 * 4 3 2 6 6 C 1.39633 * 120.62376 * 359.53318 * 4 3 2 7 7 C 1.38176 * 119.96707 * 0.99706 * 6 4 3 8 8 C 1.37762 * 119.99840 * 179.97438 * 2 1 3 9 9 C 1.50046 * 124.73986 * 177.92272 * 7 6 4 10 10 H 1.08996 * 108.67283 * 262.29549 * 9 7 6 11 11 C 1.50706 * 108.66616 * 144.39878 * 9 7 6 12 12 H 1.08002 * 119.99875 * 0.02562 * 11 9 7 13 13 C 1.37869 * 120.00018 * 180.02562 * 11 9 7 14 14 N 1.31516 * 120.00178 * 0.02562 * 13 11 9 15 15 Si 1.86806 * 119.99957 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47213 * 89.99900 * 15 13 11 17 17 H 1.48493 * 109.47052 * 209.99854 * 15 13 11 18 18 H 1.48497 * 109.46685 * 330.00133 * 15 13 11 19 19 C 1.51873 * 113.55568 * 23.35330 * 9 7 6 20 20 C 1.53515 * 108.98967 * 299.43410 * 19 9 7 21 21 S 1.76450 * 117.72881 * 180.99840 * 6 4 3 22 22 H 1.08995 * 109.47544 * 89.99766 * 1 2 3 23 23 H 1.09000 * 109.47229 * 209.99926 * 1 2 3 24 24 H 1.09008 * 109.47076 * 329.99905 * 1 2 3 25 25 H 1.08002 * 120.23911 * 359.69703 * 3 2 1 26 26 H 1.09000 * 109.46925 * 89.99773 * 5 4 3 27 27 H 1.09002 * 109.47391 * 209.99856 * 5 4 3 28 28 H 1.09006 * 109.47169 * 330.00224 * 5 4 3 29 29 H 1.08001 * 119.46946 * 359.97438 * 8 2 1 30 30 H 0.97002 * 119.99908 * 180.02562 * 14 13 11 31 31 H 1.09003 * 109.55208 * 179.57336 * 19 9 7 32 32 H 1.09002 * 109.53816 * 59.28488 * 19 9 7 33 33 H 1.09000 * 109.88820 * 313.08627 * 20 19 9 34 34 H 1.09012 * 109.94623 * 192.03710 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1986 1.1982 0.0000 4 6 3.5759 1.1866 0.0005 5 6 4.3333 2.4895 -0.0054 6 6 4.2771 -0.0208 0.0109 7 6 3.5887 -1.2188 -0.0002 8 6 2.1957 -1.1931 0.0005 9 6 4.2316 -2.5741 -0.0355 10 1 4.2396 -2.9298 -1.0657 11 6 3.4028 -3.5228 0.7918 12 1 2.5089 -3.1700 1.2845 13 6 3.7858 -4.8411 0.9195 14 7 4.8746 -5.2706 0.3199 15 14 2.7581 -6.0172 1.9444 16 1 1.7320 -6.6576 1.0828 17 1 3.6366 -7.0623 2.5281 18 1 2.0886 -5.2664 3.0367 19 6 5.6552 -2.5846 0.4935 20 6 6.5156 -1.6510 -0.3695 21 16 6.0398 0.0536 0.0380 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5139 25 1 1.6625 2.1357 -0.0049 26 1 4.5155 2.8084 1.0209 27 1 5.2855 2.3539 -0.5182 28 1 3.7466 3.2485 -0.5230 29 1 1.6471 -2.1233 0.0014 30 1 5.1439 -6.1982 0.4095 31 1 6.0548 -3.5975 0.4452 32 1 5.6628 -2.2367 1.5265 33 1 6.3290 -1.8456 -1.4257 34 1 7.5712 -1.8051 -0.1453 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261103501.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:00 Heat of formation + Delta-G solvation = -11.134055 kcal Electronic energy + Delta-G solvation = -15999.797563 eV Core-core repulsion = 13600.950433 eV Total energy + Delta-G solvation = -2398.847131 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.53270 -37.33311 -34.37609 -34.00076 -32.21805 -29.43150 -28.05325 -27.23587 -25.45961 -23.46770 -21.67325 -20.74817 -18.62176 -18.12053 -16.71931 -16.65313 -16.03282 -15.55574 -14.97772 -14.80951 -14.32370 -14.22340 -13.96833 -13.70121 -13.60875 -13.29920 -13.15041 -12.86937 -12.80492 -12.71046 -12.51203 -12.10436 -12.03983 -11.84549 -11.36778 -11.04451 -10.77182 -10.48314 -10.11624 -9.29844 -8.15307 -8.13285 -6.29575 0.40706 0.58206 0.86915 1.38149 1.39854 1.49621 1.57025 2.38138 2.83439 3.11367 3.98530 4.02538 4.08591 4.15561 4.26671 4.50266 4.54313 4.57259 4.75109 4.84285 4.87015 4.87598 4.91511 4.95518 5.10381 5.13612 5.28765 5.42791 5.48991 5.58853 5.63150 5.74601 5.79422 6.08983 6.21086 6.32284 6.76399 7.38172 8.87958 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.020944 B = 0.009380 C = 0.006732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.586943 B = 2984.494115 C = 4158.056125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.095 4.095 3 C -0.124 4.124 4 C -0.079 4.079 5 C -0.109 4.109 6 C -0.119 4.119 7 C -0.063 4.063 8 C -0.129 4.129 9 C 0.072 3.928 10 H 0.005 0.995 11 C -0.524 4.524 12 H 0.059 0.941 13 C 0.015 3.985 14 N -0.913 5.913 15 Si 0.956 3.044 16 H -0.274 1.274 17 H -0.281 1.281 18 H -0.271 1.271 19 C -0.106 4.106 20 C -0.099 4.099 21 S -0.133 6.133 22 H 0.079 0.921 23 H 0.060 0.940 24 H 0.086 0.914 25 H 0.156 0.844 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.113 0.887 30 H 0.264 0.736 31 H 0.098 0.902 32 H 0.034 0.966 33 H 0.075 0.925 34 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.146 11.999 -0.911 12.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.097 4.097 3 C -0.144 4.144 4 C -0.084 4.084 5 C -0.166 4.166 6 C -0.231 4.231 7 C -0.068 4.068 8 C -0.149 4.149 9 C 0.054 3.946 10 H 0.022 0.978 11 C -0.561 4.561 12 H 0.077 0.923 13 C -0.183 4.183 14 N -0.552 5.552 15 Si 0.781 3.219 16 H -0.200 1.200 17 H -0.207 1.207 18 H -0.196 1.196 19 C -0.145 4.145 20 C -0.246 4.246 21 S 0.109 5.891 22 H 0.098 0.902 23 H 0.079 0.921 24 H 0.105 0.895 25 H 0.174 0.826 26 H 0.095 0.905 27 H 0.087 0.913 28 H 0.110 0.890 29 H 0.131 0.869 30 H 0.073 0.927 31 H 0.116 0.884 32 H 0.053 0.947 33 H 0.093 0.907 34 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.184 12.707 -0.724 12.914 hybrid contribution -1.041 -2.435 0.163 2.653 sum -3.225 10.272 -0.562 10.781 Atomic orbital electron populations 1.20772 0.89024 1.03326 1.03001 1.20212 0.97673 0.92576 0.99255 1.21011 0.92511 0.98238 1.02594 1.20025 0.94471 0.93825 1.00076 1.20817 0.99965 0.92701 1.03068 1.21454 0.96560 0.95557 1.09510 1.20253 0.95082 0.94294 0.97155 1.21351 0.93554 0.98260 1.01747 1.17393 0.93224 0.88532 0.95460 0.97759 1.21523 1.09472 0.94317 1.30820 0.92326 1.25706 0.96272 0.99665 0.96706 1.69885 1.24424 1.16417 1.44510 0.85579 0.78709 0.78572 0.79008 1.19990 1.20655 1.19593 1.21556 0.95920 1.00948 0.96077 1.23865 1.03750 0.94143 1.02879 1.84443 0.99746 1.15796 1.89164 0.90228 0.92137 0.89500 0.82647 0.90477 0.91322 0.88985 0.86900 0.92690 0.88442 0.94671 0.90669 0.86612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.60 10.01 71.23 0.71 -1.89 16 2 C -0.10 -3.20 5.87 -19.95 -0.12 -3.32 16 3 C -0.12 -3.77 9.35 22.18 0.21 -3.56 16 4 C -0.08 -2.65 5.90 -19.65 -0.12 -2.76 16 5 C -0.11 -2.76 9.46 71.24 0.67 -2.09 16 6 C -0.12 -4.86 6.05 22.59 0.14 -4.72 16 7 C -0.06 -2.90 5.52 -19.82 -0.11 -3.01 16 8 C -0.13 -5.51 8.26 22.42 0.19 -5.32 16 9 C 0.07 3.74 1.98 -12.86 -0.03 3.72 16 10 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 11 C -0.52 -28.81 7.67 25.60 0.20 -28.61 16 12 H 0.06 3.21 6.14 -2.91 -0.02 3.19 16 13 C 0.02 0.83 5.27 84.65 0.45 1.28 16 14 N -0.91 -51.24 10.96 21.44 0.24 -51.00 16 15 Si 0.96 43.24 29.54 68.60 2.03 45.26 16 16 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 17 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 19 C -0.11 -5.15 4.82 30.40 0.15 -5.01 16 20 C -0.10 -3.93 6.52 72.15 0.47 -3.46 16 21 S -0.13 -4.95 19.97 -56.49 -1.13 -6.08 16 22 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 23 H 0.06 1.55 8.08 -2.39 -0.02 1.53 16 24 H 0.09 1.69 8.09 -2.38 -0.02 1.67 16 25 H 0.16 3.42 8.06 -2.91 -0.02 3.39 16 26 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.07 1.83 6.61 -2.39 -0.02 1.81 16 28 H 0.09 1.79 8.08 -2.38 -0.02 1.77 16 29 H 0.11 5.08 6.40 -2.91 -0.02 5.07 16 30 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 31 H 0.10 5.20 5.61 -2.39 -0.01 5.19 16 32 H 0.03 1.76 8.03 -2.39 -0.02 1.74 16 33 H 0.07 3.03 8.08 -2.39 -0.02 3.01 16 34 H 0.12 4.00 8.14 -2.38 -0.02 3.98 16 Total: -1.00 -60.67 282.52 5.03 -55.64 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 1.09 Total: 14.95 kcal Atomic # 6 Polarization: -61.57 SS G_CDS: 2.81 Total: -58.77 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: 0.24 Total: -51.00 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: -4.95 SS G_CDS: -1.13 Total: -6.08 kcal Total: -60.67 5.03 -55.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261103501.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.506 kcal (2) G-P(sol) polarization free energy of solvation -60.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds