Wall clock time and date at job start Mon Mar 30 2020 06:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47125 * 2 1 4 4 H 1.09000 * 109.47146 * 56.17766 * 3 2 1 5 5 C 1.50700 * 109.46754 * 176.17474 * 3 2 1 6 6 H 1.08005 * 120.00220 * 115.09790 * 5 3 2 7 7 C 1.37881 * 119.99996 * 295.09784 * 5 3 2 8 8 N 1.31508 * 120.00248 * 348.24258 * 7 5 3 9 9 Si 1.86806 * 119.99872 * 168.23769 * 7 5 3 10 10 H 1.48500 * 109.46963 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46822 * 120.00033 * 9 7 5 12 12 H 1.48495 * 109.47389 * 240.00286 * 9 7 5 13 13 N 1.46497 * 109.47035 * 296.17424 * 3 2 1 14 14 C 1.39184 * 120.00169 * 94.90952 * 13 3 2 15 15 C 1.39261 * 119.90172 * 6.67930 * 14 13 3 16 16 C 1.37580 * 120.13983 * 179.72572 * 15 14 13 17 17 C 1.39854 * 119.94836 * 0.54908 * 16 15 14 18 18 C 1.43199 * 120.09836 * 179.70120 * 17 16 15 19 19 N 8.12565 * 47.02964 * 346.69328 * 2 1 3 20 20 C 1.40056 * 119.81002 * 359.72524 * 17 16 15 21 21 F 1.35097 * 120.07063 * 179.97438 * 20 17 16 22 22 C 1.37975 * 119.85554 * 359.97438 * 20 17 16 23 23 H 1.09004 * 109.47451 * 185.21135 * 1 2 3 24 24 H 1.09006 * 109.47194 * 305.20989 * 1 2 3 25 25 H 1.09005 * 109.46956 * 65.20650 * 1 2 3 26 26 H 1.09001 * 109.46902 * 239.99930 * 2 1 3 27 27 H 1.09002 * 109.46901 * 119.99992 * 2 1 3 28 28 H 0.97002 * 119.99925 * 1.03821 * 8 7 5 29 29 H 0.97002 * 119.99853 * 274.90043 * 13 3 2 30 30 H 1.08005 * 119.92998 * 0.02562 * 15 14 13 31 31 H 1.08000 * 120.02299 * 180.25255 * 16 15 14 32 32 H 1.07997 * 119.97486 * 180.02562 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6218 1.9757 0.8537 5 6 3.5440 1.4434 0.0948 6 1 4.1366 1.8216 -0.7252 7 6 4.1636 0.9616 1.2284 8 7 3.4575 0.7182 2.3108 9 14 6.0062 0.6542 1.2265 10 1 6.5653 1.0053 -0.1036 11 1 6.6489 1.4927 2.2702 12 1 6.2693 -0.7792 1.5118 13 7 1.6283 2.1059 -1.2396 14 6 0.4634 2.8670 -1.2678 15 6 -0.2346 3.1121 -0.0880 16 6 -1.3836 3.8685 -0.1094 17 6 -1.8583 4.3829 -1.3202 18 6 -3.0574 5.1653 -1.3471 19 7 -4.0086 5.7860 -1.3685 20 6 -1.1578 4.1304 -2.5064 21 9 -1.6119 4.6244 -3.6789 22 6 -0.0030 3.3760 -2.4748 23 1 -0.3634 -1.0234 0.0933 24 1 -0.3634 0.5926 0.8397 25 1 -0.3633 0.4310 -0.9330 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.4984 0.8635 2.3070 29 1 2.1678 2.0149 -2.0406 30 1 0.1295 2.7115 0.8467 31 1 -1.9212 4.0607 0.8073 32 1 0.5389 3.1804 -3.3882 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308112264.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:50 Heat of formation + Delta-G solvation = -4.546421 kcal Electronic energy + Delta-G solvation = -17290.739064 eV Core-core repulsion = 14358.257170 eV Total energy + Delta-G solvation = -2932.481894 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.91219 -39.41294 -36.91843 -35.77869 -33.24094 -31.61481 -30.41546 -29.37807 -26.45070 -23.50194 -23.05196 -22.45070 -20.23770 -18.85883 -17.76506 -17.29999 -16.28345 -15.66417 -15.56530 -14.53751 -14.16021 -13.94252 -13.84324 -13.47963 -13.45108 -13.28030 -12.84914 -12.44242 -12.32449 -12.23797 -11.91081 -11.54447 -11.18641 -10.90641 -10.82495 -10.66205 -10.30779 -10.12190 -9.72354 -8.93171 -8.74985 -8.50147 -7.10062 -6.66741 -4.40792 1.09091 1.40443 2.84660 3.16901 3.30274 3.31517 3.45114 3.79356 3.99395 4.15006 4.30741 4.40015 4.88213 5.05500 5.30006 5.45667 5.59805 5.83811 5.86120 5.97496 6.05414 6.08598 6.31217 6.40782 6.50273 6.56152 6.71447 6.77733 6.94822 7.17530 7.55437 7.69453 7.71405 8.18889 8.25692 8.52829 9.28843 10.70754 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.036762 B = 0.005185 C = 0.005032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.464231 B = 5399.338690 C = 5563.544933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.135 4.135 3 C 0.253 3.747 4 H 0.045 0.955 5 C -0.621 4.621 6 H 0.058 0.942 7 C 0.032 3.968 8 N -0.898 5.898 9 Si 1.073 2.927 10 H -0.288 1.288 11 H -0.286 1.286 12 H -0.284 1.284 13 N -0.694 5.694 14 C 0.294 3.706 15 C -0.214 4.214 16 C 0.008 3.992 17 C -0.162 4.162 18 C 0.273 3.727 19 N -0.448 5.448 20 C 0.199 3.801 21 F -0.136 7.136 22 C -0.259 4.259 23 H 0.039 0.961 24 H 0.049 0.951 25 H 0.045 0.955 26 H 0.049 0.951 27 H 0.074 0.926 28 H 0.273 0.727 29 H 0.398 0.602 30 H 0.143 0.857 31 H 0.135 0.865 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.252 1.221 -5.497 7.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C 0.150 3.850 4 H 0.062 0.938 5 C -0.659 4.659 6 H 0.076 0.924 7 C -0.175 4.175 8 N -0.532 5.532 9 Si 0.901 3.099 10 H -0.214 1.214 11 H -0.212 1.212 12 H -0.210 1.210 13 N -0.310 5.310 14 C 0.178 3.822 15 C -0.236 4.236 16 C -0.014 4.014 17 C -0.170 4.170 18 C -0.040 4.040 19 N -0.124 5.124 20 C 0.176 3.824 21 F -0.114 7.114 22 C -0.284 4.284 23 H 0.058 0.942 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.233 0.767 30 H 0.160 0.840 31 H 0.152 0.848 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.341 1.530 -4.416 6.379 hybrid contribution -0.710 0.266 -1.538 1.714 sum -5.051 1.796 -5.954 8.012 Atomic orbital electron populations 1.21908 0.97916 1.00131 1.00891 1.22073 0.93170 1.00006 1.02118 1.19097 0.95718 0.88345 0.81848 0.93785 1.22045 0.90037 1.47729 1.06058 0.92387 1.25762 1.07036 0.93221 0.91434 1.70785 1.09369 1.45189 1.27862 0.83478 0.73872 0.77075 0.75505 1.21423 1.21220 1.21049 1.45539 1.21092 1.48962 1.15391 1.17897 0.85949 0.86076 0.92290 1.20846 0.98123 1.06432 0.98225 1.20675 0.93796 0.91628 0.95270 1.15580 0.95608 1.11616 0.94191 1.25462 0.92487 0.92555 0.93531 1.81175 1.12013 1.11732 1.07512 1.17179 0.92378 0.93368 0.79478 1.91495 1.88557 1.85458 1.45920 1.20287 0.99904 1.09707 0.98494 0.94215 0.93211 0.93561 0.93205 0.90753 0.91618 0.76745 0.83985 0.84750 0.84534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 8.60 37.16 0.32 -2.13 16 2 C -0.13 -2.60 5.34 -26.73 -0.14 -2.74 16 3 C 0.25 5.12 1.79 -69.09 -0.12 5.00 16 4 H 0.04 0.96 4.98 -51.93 -0.26 0.70 16 5 C -0.62 -14.73 8.68 -34.44 -0.30 -15.03 16 6 H 0.06 1.39 7.84 -52.48 -0.41 0.98 16 7 C 0.03 0.80 5.13 -17.82 -0.09 0.71 16 8 N -0.90 -23.55 12.98 55.43 0.72 -22.83 16 9 Si 1.07 22.49 29.92 -169.99 -5.09 17.40 16 10 H -0.29 -5.79 7.11 56.52 0.40 -5.39 16 11 H -0.29 -6.00 7.11 56.52 0.40 -5.60 16 12 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 13 N -0.69 -11.70 4.91 -53.30 -0.26 -11.96 16 14 C 0.29 4.46 5.38 -83.84 -0.45 4.01 16 15 C -0.21 -3.12 7.86 -39.44 -0.31 -3.43 16 16 C 0.01 0.10 9.74 -39.22 -0.38 -0.28 16 17 C -0.16 -2.27 5.75 -106.69 -0.61 -2.88 16 18 C 0.27 4.17 14.97 -22.47 -0.34 3.83 16 19 N -0.45 -7.55 18.54 41.84 0.78 -6.77 16 20 C 0.20 2.80 7.27 -39.00 -0.28 2.52 16 21 F -0.14 -1.98 16.81 2.25 0.04 -1.94 16 22 C -0.26 -3.56 9.85 -39.38 -0.39 -3.95 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.78 7.08 -51.93 -0.37 0.41 16 25 H 0.05 0.72 6.90 -51.93 -0.36 0.36 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.07 1.62 6.52 -51.93 -0.34 1.28 16 28 H 0.27 6.99 6.26 -40.82 -0.26 6.73 16 29 H 0.40 6.27 8.70 -40.82 -0.36 5.91 16 30 H 0.14 2.19 5.26 -52.48 -0.28 1.92 16 31 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 32 H 0.14 1.65 8.06 -52.49 -0.42 1.22 16 LS Contribution 280.78 15.07 4.23 4.23 Total: -1.00 -25.71 280.78 -5.79 -31.50 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -3.11 Total: 4.74 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -3.10 Total: -14.38 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: 1.23 Total: -41.56 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.09 Total: 17.40 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -25.71 -5.79 -31.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308112264.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.954 kcal (2) G-P(sol) polarization free energy of solvation -25.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds