Wall clock time and date at job start Mon Mar 30 2020 06:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47125 * 2 1 4 4 H 1.09000 * 109.47146 * 56.17766 * 3 2 1 5 5 C 1.50700 * 109.46754 * 176.17474 * 3 2 1 6 6 H 1.08005 * 120.00220 * 115.09790 * 5 3 2 7 7 C 1.37881 * 119.99996 * 295.09784 * 5 3 2 8 8 N 1.31508 * 120.00248 * 348.24258 * 7 5 3 9 9 Si 1.86806 * 119.99872 * 168.23769 * 7 5 3 10 10 H 1.48500 * 109.46963 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46822 * 120.00033 * 9 7 5 12 12 H 1.48495 * 109.47389 * 240.00286 * 9 7 5 13 13 N 1.46497 * 109.47035 * 296.17424 * 3 2 1 14 14 C 1.39184 * 120.00169 * 94.90952 * 13 3 2 15 15 C 1.39261 * 119.90172 * 6.67930 * 14 13 3 16 16 C 1.37580 * 120.13983 * 179.72572 * 15 14 13 17 17 C 1.39854 * 119.94836 * 0.54908 * 16 15 14 18 18 C 1.43199 * 120.09836 * 179.70120 * 17 16 15 19 19 N 8.12565 * 47.02964 * 346.69328 * 2 1 3 20 20 C 1.40056 * 119.81002 * 359.72524 * 17 16 15 21 21 F 1.35097 * 120.07063 * 179.97438 * 20 17 16 22 22 C 1.37975 * 119.85554 * 359.97438 * 20 17 16 23 23 H 1.09004 * 109.47451 * 185.21135 * 1 2 3 24 24 H 1.09006 * 109.47194 * 305.20989 * 1 2 3 25 25 H 1.09005 * 109.46956 * 65.20650 * 1 2 3 26 26 H 1.09001 * 109.46902 * 239.99930 * 2 1 3 27 27 H 1.09002 * 109.46901 * 119.99992 * 2 1 3 28 28 H 0.97002 * 119.99925 * 1.03821 * 8 7 5 29 29 H 0.97002 * 119.99853 * 274.90043 * 13 3 2 30 30 H 1.08005 * 119.92998 * 0.02562 * 15 14 13 31 31 H 1.08000 * 120.02299 * 180.25255 * 16 15 14 32 32 H 1.07997 * 119.97486 * 180.02562 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6218 1.9757 0.8537 5 6 3.5440 1.4434 0.0948 6 1 4.1366 1.8216 -0.7252 7 6 4.1636 0.9616 1.2284 8 7 3.4575 0.7182 2.3108 9 14 6.0062 0.6542 1.2265 10 1 6.5653 1.0053 -0.1036 11 1 6.6489 1.4927 2.2702 12 1 6.2693 -0.7792 1.5118 13 7 1.6283 2.1059 -1.2396 14 6 0.4634 2.8670 -1.2678 15 6 -0.2346 3.1121 -0.0880 16 6 -1.3836 3.8685 -0.1094 17 6 -1.8583 4.3829 -1.3202 18 6 -3.0574 5.1653 -1.3471 19 7 -4.0086 5.7860 -1.3685 20 6 -1.1578 4.1304 -2.5064 21 9 -1.6119 4.6244 -3.6789 22 6 -0.0030 3.3760 -2.4748 23 1 -0.3634 -1.0234 0.0933 24 1 -0.3634 0.5926 0.8397 25 1 -0.3633 0.4310 -0.9330 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.4984 0.8635 2.3070 29 1 2.1678 2.0149 -2.0406 30 1 0.1295 2.7115 0.8467 31 1 -1.9212 4.0607 0.8073 32 1 0.5389 3.1804 -3.3882 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308112264.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:50 Heat of formation + Delta-G solvation = -17.258739 kcal Electronic energy + Delta-G solvation = -17291.290312 eV Core-core repulsion = 14358.257170 eV Total energy + Delta-G solvation = -2933.033142 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.05733 -40.63349 -38.27464 -37.14133 -34.79316 -33.12311 -31.58146 -30.67196 -28.03092 -25.15345 -24.20862 -23.73044 -21.71593 -20.05511 -19.32887 -18.63973 -17.55284 -16.88963 -16.78969 -15.96951 -15.60925 -15.29927 -15.25929 -14.71527 -14.62480 -14.59601 -14.22769 -13.91486 -13.78210 -13.57633 -13.20457 -12.93914 -12.55392 -12.41786 -12.28784 -12.12258 -11.91480 -11.59884 -11.13881 -10.55593 -10.34137 -9.88650 -8.61877 -8.35993 -6.32464 -0.08725 0.29642 1.60238 1.62563 1.65207 1.81192 1.96624 2.46224 2.63653 2.83580 2.95080 3.19267 3.22823 3.81051 4.12729 4.29597 4.39553 4.44668 4.48108 4.63202 4.83379 4.86625 5.01179 5.19680 5.22990 5.24311 5.30300 5.39053 5.61837 5.67871 5.90436 6.07647 6.47964 6.51164 6.64221 6.92947 7.43864 8.79311 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.036762 B = 0.005185 C = 0.005032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.464231 B = 5399.338690 C = 5563.544933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.127 4.127 3 C 0.260 3.740 4 H 0.031 0.969 5 C -0.626 4.626 6 H 0.052 0.948 7 C -0.012 4.012 8 N -0.926 5.926 9 Si 1.111 2.889 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.282 1.282 13 N -0.699 5.699 14 C 0.285 3.715 15 C -0.221 4.221 16 C 0.023 3.977 17 C -0.158 4.158 18 C 0.288 3.712 19 N -0.475 5.475 20 C 0.196 3.804 21 F -0.137 7.137 22 C -0.246 4.246 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.046 0.954 27 H 0.045 0.955 28 H 0.266 0.734 29 H 0.403 0.597 30 H 0.133 0.867 31 H 0.160 0.840 32 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.620 1.451 -6.342 7.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.166 4.166 3 C 0.156 3.844 4 H 0.048 0.952 5 C -0.664 4.664 6 H 0.071 0.929 7 C -0.213 4.213 8 N -0.562 5.562 9 Si 0.935 3.065 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.208 1.208 13 N -0.318 5.318 14 C 0.171 3.829 15 C -0.244 4.244 16 C 0.002 3.998 17 C -0.166 4.166 18 C -0.025 4.025 19 N -0.152 5.152 20 C 0.174 3.826 21 F -0.116 7.116 22 C -0.270 4.270 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.238 0.762 30 H 0.150 0.850 31 H 0.178 0.822 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -4.738 1.783 -5.291 7.322 hybrid contribution -0.660 0.258 -1.324 1.502 sum -5.397 2.041 -6.615 8.778 Atomic orbital electron populations 1.21789 0.95359 1.01123 1.01457 1.21905 0.95390 0.98885 1.00437 1.18768 0.93767 0.89023 0.82872 0.95176 1.22410 0.92178 1.46460 1.05385 0.92925 1.26821 1.09936 0.93124 0.91461 1.70866 1.09200 1.47310 1.28813 0.82979 0.70537 0.76959 0.76074 1.19904 1.21273 1.20839 1.45196 1.22181 1.50016 1.14361 1.17999 0.85580 0.86267 0.93063 1.20840 0.98739 1.07028 0.97756 1.20847 0.92955 0.90096 0.95908 1.15649 0.95082 1.11299 0.94570 1.25551 0.92274 0.92012 0.92686 1.81198 1.12927 1.12679 1.08425 1.17220 0.92498 0.93491 0.79421 1.91499 1.88567 1.85482 1.46037 1.20360 0.99495 1.08526 0.98644 0.92969 0.92902 0.92677 0.93526 0.93681 0.92358 0.76161 0.84966 0.82219 0.82712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.35 8.60 71.98 0.62 -3.73 16 2 C -0.13 -4.87 5.34 30.59 0.16 -4.71 16 3 C 0.26 10.49 1.79 44.24 0.08 10.57 16 4 H 0.03 1.33 4.98 -2.39 -0.01 1.31 16 5 C -0.63 -29.73 8.68 25.60 0.22 -29.51 16 6 H 0.05 2.50 7.84 -2.91 -0.02 2.48 16 7 C -0.01 -0.60 5.13 84.66 0.43 -0.17 16 8 N -0.93 -49.31 12.98 21.45 0.28 -49.03 16 9 Si 1.11 45.18 29.92 68.60 2.05 47.23 16 10 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 11 H -0.29 -11.60 7.11 99.48 0.71 -10.89 16 12 H -0.28 -11.31 7.11 99.48 0.71 -10.61 16 13 N -0.70 -22.79 4.91 -322.53 -1.58 -24.37 16 14 C 0.28 8.12 5.38 38.41 0.21 8.33 16 15 C -0.22 -6.07 7.86 22.36 0.18 -5.90 16 16 C 0.02 0.54 9.74 22.51 0.22 0.76 16 17 C -0.16 -4.03 5.75 -21.20 -0.12 -4.15 16 18 C 0.29 8.17 14.97 88.33 1.32 9.50 16 19 N -0.48 -15.24 18.54 19.00 0.35 -14.89 16 20 C 0.20 5.05 7.27 22.65 0.16 5.21 16 21 F -0.14 -3.67 16.81 44.97 0.76 -2.92 16 22 C -0.25 -6.14 9.85 22.40 0.22 -5.92 16 23 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.05 1.59 7.08 -2.38 -0.02 1.58 16 25 H 0.05 1.61 6.90 -2.38 -0.02 1.59 16 26 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.04 1.99 6.52 -2.39 -0.02 1.97 16 28 H 0.27 13.98 6.26 -92.71 -0.58 13.40 16 29 H 0.40 12.17 8.70 -92.71 -0.81 11.37 16 30 H 0.13 3.98 5.26 -2.91 -0.02 3.96 16 31 H 0.16 2.92 8.06 -2.91 -0.02 2.89 16 32 H 0.16 3.28 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -53.96 280.78 6.11 -47.85 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 0.55 Total: 15.85 kcal Atomic # 6 Polarization: -23.43 SS G_CDS: 3.71 Total: -19.72 kcal Atomic # 7 Polarization: -87.33 SS G_CDS: -0.95 Total: -88.29 kcal Atomic # 9 Polarization: -3.67 SS G_CDS: 0.76 Total: -2.92 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.05 Total: 47.23 kcal Total: -53.96 6.11 -47.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308112264.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.588 kcal (2) G-P(sol) polarization free energy of solvation -53.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds