Wall clock time and date at job start Mon Mar 30 2020 06:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39865 * 120.09345 * 260.27810 * 3 2 1 5 5 C 1.37575 * 119.94703 * 179.69589 * 4 3 2 6 6 C 1.39265 * 120.14171 * 0.60591 * 5 4 3 7 7 N 1.39178 * 119.90899 * 179.69920 * 6 5 4 8 8 C 1.46502 * 119.99974 * 359.97252 * 7 6 5 9 9 C 1.53000 * 109.47603 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.47086 * 179.97438 * 9 8 7 11 11 C 1.50708 * 109.46911 * 180.02562 * 10 9 8 12 12 H 1.07997 * 119.99882 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00141 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99752 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00337 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47223 * 59.99623 * 15 13 11 17 17 H 1.48494 * 109.47631 * 180.02562 * 15 13 11 18 18 H 1.48509 * 109.46856 * 300.00030 * 15 13 11 19 19 C 1.39042 * 120.18949 * 359.66783 * 6 5 4 20 20 C 1.37984 * 120.05018 * 0.02817 * 19 6 5 21 21 F 1.35096 * 120.06733 * 179.97438 * 20 19 6 22 22 H 1.08005 * 120.02737 * 359.97438 * 4 3 2 23 23 H 1.08002 * 119.93196 * 180.27955 * 5 4 3 24 24 H 0.96994 * 120.00498 * 179.97438 * 7 6 5 25 25 H 1.09008 * 109.47174 * 300.00724 * 8 7 6 26 26 H 1.08994 * 109.47156 * 59.99915 * 8 7 6 27 27 H 1.08993 * 109.46810 * 300.00271 * 9 8 7 28 28 H 1.09003 * 109.47066 * 59.99877 * 9 8 7 29 29 H 1.09001 * 109.47405 * 299.99586 * 10 9 8 30 30 H 1.08995 * 109.47150 * 60.00686 * 10 9 8 31 31 H 0.97003 * 119.99626 * 179.97438 * 14 13 11 32 32 H 1.07999 * 119.97393 * 180.02562 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2692 0.2053 1.1927 5 6 4.6449 0.1991 1.1904 6 6 5.3413 0.0020 0.0005 7 7 6.7331 0.0028 0.0027 8 6 7.4635 0.2115 1.2553 9 6 8.9682 0.1673 0.9819 10 6 9.7309 0.3858 2.2900 11 6 11.2131 0.3428 2.0205 12 1 11.5748 0.1767 1.0166 13 6 12.1073 0.5156 3.0556 14 7 11.6668 0.7185 4.2781 15 14 13.9444 0.4631 2.7215 16 1 14.3027 1.5326 1.7556 17 1 14.6848 0.6738 3.9913 18 1 14.3062 -0.8599 2.1519 19 6 4.6501 -0.1964 -1.1895 20 6 3.2703 -0.1979 -1.1952 21 9 2.5983 -0.3900 -2.3513 22 1 2.7311 0.3636 2.1157 23 1 5.1861 0.3527 2.1123 24 1 7.2195 -0.1347 -0.8252 25 1 7.1988 1.1831 1.6728 26 1 7.1996 -0.5727 1.9648 27 1 9.2331 -0.8040 0.5643 28 1 9.2318 0.9518 0.2725 29 1 9.4660 1.3574 2.7072 30 1 9.4675 -0.3984 2.9996 31 1 12.2960 0.8397 5.0064 32 1 5.1936 -0.3493 -2.1101 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308121559.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:08 Heat of formation + Delta-G solvation = -9.412201 kcal Electronic energy + Delta-G solvation = -16151.814984 eV Core-core repulsion = 13219.122094 eV Total energy + Delta-G solvation = -2932.692890 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.20433 -39.68710 -37.02745 -35.83743 -33.75052 -31.91919 -30.88500 -29.51701 -26.63986 -23.80565 -23.46791 -22.00460 -20.53132 -19.19319 -17.78284 -17.07555 -16.32338 -15.96474 -15.76989 -15.03737 -14.77247 -14.54056 -14.40751 -13.82565 -13.78461 -13.40525 -12.99514 -12.75995 -12.46521 -12.13120 -11.96634 -11.82867 -11.50103 -10.98574 -10.84969 -10.68368 -10.26656 -9.86905 -9.60890 -9.26386 -9.12032 -8.46931 -7.68500 -6.12058 -4.15453 0.70720 1.01989 2.58512 2.84351 3.19210 3.25702 3.31122 3.33057 3.64909 3.82698 4.00828 4.36224 4.51243 4.89628 5.06382 5.18672 5.24270 5.38838 5.50299 5.61891 5.73074 5.87984 5.98801 6.01925 6.34029 6.38838 6.52744 6.81286 7.08519 7.42933 7.49447 7.52129 7.60891 7.85543 8.26554 8.90682 9.49637 10.99123 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.061209 B = 0.003176 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.340371 B = 8815.381595 C = 9246.971840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C 0.267 3.733 3 C -0.145 4.145 4 C 0.010 3.990 5 C -0.211 4.211 6 C 0.282 3.718 7 N -0.722 5.722 8 C 0.111 3.889 9 C -0.122 4.122 10 C 0.025 3.975 11 C -0.526 4.526 12 H 0.055 0.945 13 C 0.058 3.942 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.246 4.246 20 C 0.198 3.802 21 F -0.131 7.131 22 H 0.140 0.860 23 H 0.142 0.858 24 H 0.404 0.596 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.263 0.737 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.310 -1.309 -7.853 14.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.111 5.111 2 C -0.047 4.047 3 C -0.153 4.153 4 C -0.011 4.011 5 C -0.234 4.234 6 C 0.170 3.830 7 N -0.344 5.344 8 C -0.011 4.011 9 C -0.160 4.160 10 C -0.012 4.012 11 C -0.564 4.564 12 H 0.073 0.927 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.721 3.279 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.202 1.202 19 C -0.270 4.270 20 C 0.175 3.825 21 F -0.110 7.110 22 H 0.158 0.842 23 H 0.160 0.840 24 H 0.240 0.760 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.072 0.928 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -13.865 -1.250 -7.507 15.816 hybrid contribution 1.637 -0.107 -0.656 1.766 sum -12.228 -1.358 -8.163 14.765 Atomic orbital electron populations 1.81211 1.12013 1.10705 1.07138 1.25396 0.92336 0.93099 0.93891 1.15683 0.84693 1.20569 0.94321 1.20750 0.93325 0.91322 0.95697 1.20723 0.93643 1.11217 0.97845 1.17804 0.84548 0.87939 0.92718 1.45246 1.02082 1.74978 1.12077 1.21856 0.93555 1.01081 0.84649 1.21881 0.90639 1.01203 1.02270 1.19020 0.94342 0.97403 0.90480 1.21147 0.91256 1.49763 0.94232 0.92696 1.25012 0.99095 0.95108 0.95117 1.69940 1.34770 1.48918 0.99646 0.86638 0.85094 0.78628 0.77537 1.20199 1.21213 1.20205 1.20333 0.91777 1.15937 0.98963 1.17189 0.89241 0.96021 0.80042 1.91526 1.80509 1.91866 1.47062 0.84231 0.84031 0.76030 0.91593 0.91588 0.92561 0.92562 0.96262 0.96259 0.92781 0.84071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.24 18.54 41.83 0.78 -5.47 16 2 C 0.27 3.30 14.97 -22.47 -0.34 2.96 16 3 C -0.15 -1.52 5.75 -106.69 -0.61 -2.13 16 4 C 0.01 0.09 9.74 -39.21 -0.38 -0.29 16 5 C -0.21 -2.01 9.28 -39.44 -0.37 -2.38 16 6 C 0.28 2.85 6.65 -83.85 -0.56 2.29 16 7 N -0.72 -7.69 5.71 -58.63 -0.33 -8.02 16 8 C 0.11 1.46 4.90 -4.04 -0.02 1.44 16 9 C -0.12 -2.06 5.27 -26.73 -0.14 -2.20 16 10 C 0.03 0.58 4.97 -27.88 -0.14 0.44 16 11 C -0.53 -13.84 9.11 -34.44 -0.31 -14.15 16 12 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 13 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 14 N -0.89 -25.51 13.29 55.43 0.74 -24.77 16 15 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 19 C -0.25 -2.35 9.85 -39.38 -0.39 -2.73 16 20 C 0.20 2.09 7.27 -39.00 -0.28 1.80 16 21 F -0.13 -1.51 16.81 2.25 0.04 -1.48 16 22 H 0.14 0.94 8.06 -52.48 -0.42 0.51 16 23 H 0.14 1.27 6.69 -52.49 -0.35 0.92 16 24 H 0.40 3.78 8.47 -40.82 -0.35 3.43 16 25 H 0.07 0.86 7.93 -51.92 -0.41 0.45 16 26 H 0.07 0.86 7.93 -51.93 -0.41 0.45 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 294.19 15.07 4.43 4.43 Total: -1.00 -29.16 294.19 -6.61 -35.77 By element: Atomic # 1 Polarization: 1.00 SS G_CDS: -3.60 Total: -2.60 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -3.64 Total: -13.47 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 1.18 Total: -38.26 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.16 -6.61 -35.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308121559.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.361 kcal (2) G-P(sol) polarization free energy of solvation -29.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds