Wall clock time and date at job start Mon Mar 30 2020 06:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39865 * 120.09345 * 260.27810 * 3 2 1 5 5 C 1.37575 * 119.94703 * 179.69589 * 4 3 2 6 6 C 1.39265 * 120.14171 * 0.60591 * 5 4 3 7 7 N 1.39178 * 119.90899 * 179.69920 * 6 5 4 8 8 C 1.46502 * 119.99974 * 359.97252 * 7 6 5 9 9 C 1.53000 * 109.47603 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.47086 * 179.97438 * 9 8 7 11 11 C 1.50708 * 109.46911 * 180.02562 * 10 9 8 12 12 H 1.07997 * 119.99882 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00141 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99752 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00337 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47223 * 59.99623 * 15 13 11 17 17 H 1.48494 * 109.47631 * 180.02562 * 15 13 11 18 18 H 1.48509 * 109.46856 * 300.00030 * 15 13 11 19 19 C 1.39042 * 120.18949 * 359.66783 * 6 5 4 20 20 C 1.37984 * 120.05018 * 0.02817 * 19 6 5 21 21 F 1.35096 * 120.06733 * 179.97438 * 20 19 6 22 22 H 1.08005 * 120.02737 * 359.97438 * 4 3 2 23 23 H 1.08002 * 119.93196 * 180.27955 * 5 4 3 24 24 H 0.96994 * 120.00498 * 179.97438 * 7 6 5 25 25 H 1.09008 * 109.47174 * 300.00724 * 8 7 6 26 26 H 1.08994 * 109.47156 * 59.99915 * 8 7 6 27 27 H 1.08993 * 109.46810 * 300.00271 * 9 8 7 28 28 H 1.09003 * 109.47066 * 59.99877 * 9 8 7 29 29 H 1.09001 * 109.47405 * 299.99586 * 10 9 8 30 30 H 1.08995 * 109.47150 * 60.00686 * 10 9 8 31 31 H 0.97003 * 119.99626 * 179.97438 * 14 13 11 32 32 H 1.07999 * 119.97393 * 180.02562 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2692 0.2053 1.1927 5 6 4.6449 0.1991 1.1904 6 6 5.3413 0.0020 0.0005 7 7 6.7331 0.0028 0.0027 8 6 7.4635 0.2115 1.2553 9 6 8.9682 0.1673 0.9819 10 6 9.7309 0.3858 2.2900 11 6 11.2131 0.3428 2.0205 12 1 11.5748 0.1767 1.0166 13 6 12.1073 0.5156 3.0556 14 7 11.6668 0.7185 4.2781 15 14 13.9444 0.4631 2.7215 16 1 14.3027 1.5326 1.7556 17 1 14.6848 0.6738 3.9913 18 1 14.3062 -0.8599 2.1519 19 6 4.6501 -0.1964 -1.1895 20 6 3.2703 -0.1979 -1.1952 21 9 2.5983 -0.3900 -2.3513 22 1 2.7311 0.3636 2.1157 23 1 5.1861 0.3527 2.1123 24 1 7.2195 -0.1347 -0.8252 25 1 7.1988 1.1831 1.6728 26 1 7.1996 -0.5727 1.9648 27 1 9.2331 -0.8040 0.5643 28 1 9.2318 0.9518 0.2725 29 1 9.4660 1.3574 2.7072 30 1 9.4675 -0.3984 2.9996 31 1 12.2960 0.8397 5.0064 32 1 5.1936 -0.3493 -2.1101 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308121559.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:08 Heat of formation + Delta-G solvation = -25.432200 kcal Electronic energy + Delta-G solvation = -16152.509663 eV Core-core repulsion = 13219.122094 eV Total energy + Delta-G solvation = -2933.387570 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.05760 -40.50046 -38.02937 -36.94496 -35.38579 -33.42457 -31.74800 -30.60220 -28.14223 -25.23277 -24.28150 -23.12869 -21.94017 -20.04505 -18.65722 -18.52050 -17.71536 -16.82155 -16.67335 -16.44150 -16.23032 -15.66052 -15.29157 -14.76989 -14.60217 -14.38414 -14.27156 -14.19750 -13.68199 -13.62966 -13.09187 -13.05763 -12.67004 -12.50916 -12.44264 -12.13111 -11.67108 -11.41602 -11.16305 -10.95466 -10.51142 -9.88767 -8.52714 -8.17649 -6.27439 -0.12962 0.27908 1.43871 1.44954 1.52863 1.62277 1.95056 2.28991 2.44957 2.82053 2.93331 3.16874 3.21206 3.79568 4.13741 4.18003 4.32185 4.32254 4.42085 4.66776 4.84676 5.00593 5.04361 5.08131 5.22307 5.25384 5.26744 5.54922 5.65495 5.78839 5.89543 6.16835 6.29617 6.48182 6.72450 6.90484 7.42010 8.93604 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.061209 B = 0.003176 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.340371 B = 8815.381595 C = 9246.971840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C 0.284 3.716 3 C -0.152 4.152 4 C 0.022 3.978 5 C -0.214 4.214 6 C 0.278 3.722 7 N -0.718 5.718 8 C 0.126 3.874 9 C -0.107 4.107 10 C 0.025 3.975 11 C -0.543 4.543 12 H 0.060 0.940 13 C 0.001 3.999 14 N -0.931 5.931 15 Si 0.958 3.042 16 H -0.268 1.268 17 H -0.286 1.286 18 H -0.268 1.268 19 C -0.237 4.237 20 C 0.189 3.811 21 F -0.139 7.139 22 H 0.163 0.837 23 H 0.149 0.851 24 H 0.412 0.588 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.060 0.940 29 H -0.002 1.002 30 H -0.002 1.002 31 H 0.263 0.737 32 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.802 -1.452 -8.724 14.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.153 5.153 2 C -0.029 4.029 3 C -0.160 4.160 4 C 0.001 3.999 5 C -0.237 4.237 6 C 0.167 3.833 7 N -0.342 5.342 8 C 0.002 3.998 9 C -0.145 4.145 10 C -0.012 4.012 11 C -0.581 4.581 12 H 0.079 0.921 13 C -0.197 4.197 14 N -0.572 5.572 15 Si 0.783 3.217 16 H -0.193 1.193 17 H -0.212 1.212 18 H -0.193 1.193 19 C -0.260 4.260 20 C 0.167 3.833 21 F -0.118 7.118 22 H 0.180 0.820 23 H 0.167 0.833 24 H 0.249 0.751 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.016 0.984 30 H 0.016 0.984 31 H 0.072 0.928 32 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -13.370 -1.398 -8.408 15.856 hybrid contribution 1.475 -0.063 -0.386 1.526 sum -11.894 -1.461 -8.794 14.865 Atomic orbital electron populations 1.81224 1.13224 1.12361 1.08467 1.25655 0.92588 0.91946 0.92693 1.15800 0.83718 1.21384 0.95050 1.20942 0.93122 0.89911 0.95939 1.20881 0.93899 1.10904 0.98003 1.17880 0.84149 0.88138 0.93176 1.44971 1.02268 1.75495 1.11468 1.21487 0.91203 1.01401 0.85666 1.21585 0.92594 1.01493 0.98860 1.18925 0.93843 0.95419 0.93059 1.21689 0.93184 1.48822 0.94443 0.92136 1.25898 1.03837 0.94953 0.94980 1.70066 1.36246 1.50301 1.00557 0.85602 0.79582 0.79056 0.77423 1.19298 1.21206 1.19306 1.20420 0.91306 1.14811 0.99497 1.17309 0.89638 0.96613 0.79778 1.91510 1.80725 1.92027 1.47520 0.81995 0.83344 0.75120 0.91404 0.91398 0.92135 0.92140 0.98366 0.98362 0.92838 0.82368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -13.51 18.54 19.00 0.35 -13.16 16 2 C 0.28 6.76 14.97 88.33 1.32 8.08 16 3 C -0.15 -2.92 5.75 -21.20 -0.12 -3.05 16 4 C 0.02 0.34 9.74 22.51 0.22 0.56 16 5 C -0.21 -3.54 9.28 22.36 0.21 -3.33 16 6 C 0.28 4.91 6.65 38.42 0.26 5.16 16 7 N -0.72 -13.48 5.71 -339.42 -1.94 -15.42 16 8 C 0.13 3.06 4.90 86.38 0.42 3.48 16 9 C -0.11 -3.48 5.27 30.59 0.16 -3.32 16 10 C 0.03 1.16 4.97 29.85 0.15 1.31 16 11 C -0.54 -28.49 9.11 25.60 0.23 -28.25 16 12 H 0.06 3.02 7.74 -2.91 -0.02 3.00 16 13 C 0.00 0.07 5.46 84.65 0.46 0.53 16 14 N -0.93 -53.78 13.29 21.44 0.28 -53.49 16 15 Si 0.96 41.95 29.54 68.60 2.03 43.97 16 16 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 17 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 18 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 19 C -0.24 -3.94 9.85 22.40 0.22 -3.72 16 20 C 0.19 3.66 7.27 22.65 0.16 3.82 16 21 F -0.14 -3.05 16.81 44.97 0.76 -2.29 16 22 H 0.16 1.73 8.06 -2.91 -0.02 1.70 16 23 H 0.15 2.29 6.69 -2.91 -0.02 2.27 16 24 H 0.41 6.56 8.47 -92.71 -0.79 5.78 16 25 H 0.07 1.64 7.93 -2.38 -0.02 1.62 16 26 H 0.07 1.64 7.93 -2.39 -0.02 1.63 16 27 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 30 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 31 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 32 H 0.16 2.06 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -62.32 294.19 5.54 -56.78 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: 0.36 Total: 2.31 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: 3.70 Total: -18.71 kcal Atomic # 7 Polarization: -80.76 SS G_CDS: -1.30 Total: -82.06 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.76 Total: -2.29 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.97 kcal Total: -62.32 5.54 -56.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308121559.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.346 kcal (2) G-P(sol) polarization free energy of solvation -62.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds