Wall clock time and date at job start Mon Mar 30 2020 06:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39116 * 120.11851 * 2 1 4 4 N 1.37684 * 133.47729 * 0.32632 * 3 2 1 5 5 H 0.97001 * 125.07059 * 359.97438 * 4 3 2 6 6 C 1.36902 * 109.86712 * 180.10931 * 4 3 2 7 7 C 1.50697 * 125.04036 * 179.88550 * 6 4 3 8 8 H 1.09004 * 109.47205 * 334.71915 * 7 6 4 9 9 N 1.46901 * 109.47277 * 214.72180 * 7 6 4 10 10 C 1.50700 * 109.47266 * 94.71822 * 7 6 4 11 11 H 1.07999 * 119.99988 * 0.02562 * 10 7 6 12 12 C 1.37885 * 120.00047 * 180.02562 * 10 7 6 13 13 N 1.31518 * 119.99792 * 359.72305 * 12 10 7 14 14 Si 1.86795 * 120.00009 * 180.02562 * 12 10 7 15 15 H 1.48501 * 109.47088 * 89.99795 * 14 12 10 16 16 H 1.48495 * 109.47293 * 209.99997 * 14 12 10 17 17 H 1.48507 * 109.47015 * 329.99955 * 14 12 10 18 18 C 1.34212 * 109.92364 * 359.61836 * 6 4 3 19 19 C 1.40662 * 119.35958 * 180.02562 * 3 2 1 20 20 C 1.39631 * 119.96534 * 359.97137 * 19 3 2 21 21 C 1.36608 * 119.79676 * 0.02562 * 20 19 3 22 22 C 1.37946 * 120.12042 * 179.97438 * 2 1 3 23 23 F 1.35106 * 119.69587 * 359.97438 * 22 2 1 24 24 H 1.09000 * 109.47185 * 270.00312 * 1 2 3 25 25 H 1.09001 * 109.47332 * 30.00919 * 1 2 3 26 26 H 1.09004 * 109.47157 * 150.00284 * 1 2 3 27 27 H 1.00903 * 111.00044 * 176.04170 * 9 7 6 28 28 H 1.00893 * 110.99930 * 299.99775 * 9 7 6 29 29 H 0.97000 * 119.99468 * 179.97438 * 13 12 10 30 30 H 1.07996 * 126.49867 * 180.24566 * 18 6 4 31 31 H 1.08002 * 120.10236 * 179.97438 * 20 19 3 32 32 H 1.08011 * 119.74510 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2051 1.2033 0.0000 4 7 1.8163 2.5241 0.0057 5 1 0.8973 2.8346 0.0107 6 6 2.9200 3.3341 0.0001 7 6 2.8876 4.8407 0.0014 8 1 1.9483 5.1843 -0.4321 9 7 4.0108 5.3553 -0.7934 10 6 3.0016 5.3445 1.4171 11 1 3.0891 4.6437 2.2342 12 6 2.9940 6.7000 1.6692 13 7 2.8929 7.5535 0.6737 14 14 3.1360 7.3245 3.4240 15 1 4.5678 7.5207 3.7653 16 1 2.4156 8.6169 3.5493 17 1 2.5373 6.3320 4.3525 18 6 4.0352 2.5874 -0.0008 19 6 3.6116 1.1847 -0.0005 20 6 4.2929 -0.0341 -0.0005 21 6 3.5894 -1.2051 -0.0004 22 6 2.1993 -1.1932 0.0005 23 9 1.5200 -2.3611 0.0016 24 1 -0.3633 0.0001 1.0277 25 1 -0.3634 0.8899 -0.5140 26 1 -0.3634 -0.8900 -0.5138 27 1 3.9744 6.3614 -0.8617 28 1 4.8935 5.0504 -0.4117 29 1 2.8872 8.5071 0.8511 30 1 5.0520 2.9514 -0.0010 31 1 5.3728 -0.0510 -0.0013 32 1 4.1173 -2.1474 0.0001 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309358038.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:57 Heat of formation + Delta-G solvation = -5.048054 kcal Electronic energy + Delta-G solvation = -17358.219920 eV Core-core repulsion = 14425.716273 eV Total energy + Delta-G solvation = -2932.503647 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.60426 -40.81857 -36.74129 -34.47908 -32.98425 -31.37232 -29.54466 -27.83238 -26.60613 -26.01649 -23.02126 -21.75595 -20.41663 -19.35571 -17.70982 -16.71584 -16.41982 -15.67979 -15.45097 -14.96876 -14.61505 -13.94284 -13.87356 -13.23346 -13.11223 -12.95917 -12.80594 -12.60094 -12.49485 -12.15763 -11.41725 -11.29976 -11.08871 -10.87898 -10.82068 -10.65224 -10.13562 -9.92781 -9.03380 -8.79940 -7.75334 -7.39271 -7.06209 -6.24464 -4.42725 1.34450 1.82092 3.14265 3.21973 3.24562 3.40683 3.54888 4.10329 4.23310 4.67928 4.90633 4.99027 5.07094 5.22641 5.51449 5.62217 5.64953 5.75616 5.97899 6.02336 6.24016 6.36993 6.45613 6.47102 6.62246 6.77524 6.95131 7.18394 7.48780 7.60430 7.70366 7.87650 8.09854 8.49287 8.75643 8.96369 9.30529 10.72702 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.034976 B = 0.005423 C = 0.005256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.362783 B = 5162.339355 C = 5326.340065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.129 4.129 3 C 0.110 3.890 4 N -0.585 5.585 5 H 0.412 0.588 6 C 0.152 3.848 7 C 0.262 3.738 8 H 0.047 0.953 9 N -0.844 5.844 10 C -0.549 4.549 11 H 0.059 0.941 12 C 0.068 3.932 13 N -0.892 5.892 14 Si 0.902 3.098 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.273 1.273 18 C -0.217 4.217 19 C -0.103 4.103 20 C -0.054 4.054 21 C -0.182 4.182 22 C 0.091 3.909 23 F -0.146 7.146 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.360 0.640 28 H 0.318 0.682 29 H 0.268 0.732 30 H 0.142 0.858 31 H 0.127 0.873 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.989 -11.277 -1.283 11.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.133 4.133 3 C 0.001 3.999 4 N -0.187 5.187 5 H 0.249 0.751 6 C 0.043 3.957 7 C 0.151 3.849 8 H 0.065 0.935 9 N -0.375 5.375 10 C -0.589 4.589 11 H 0.078 0.922 12 C -0.135 4.135 13 N -0.530 5.530 14 Si 0.729 3.271 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.198 1.198 18 C -0.241 4.241 19 C -0.109 4.109 20 C -0.073 4.073 21 C -0.202 4.202 22 C 0.071 3.929 23 F -0.125 7.125 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.177 0.823 28 H 0.128 0.872 29 H 0.078 0.922 30 H 0.160 0.840 31 H 0.145 0.855 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.457 -11.438 -1.946 11.693 hybrid contribution -0.239 0.844 1.918 2.109 sum -1.696 -10.594 -0.029 10.729 Atomic orbital electron populations 1.20574 0.90879 1.02683 1.02294 1.18577 0.95741 0.89611 1.09396 1.17620 0.93545 0.84442 1.04272 1.41821 1.08950 1.03277 1.64673 0.75120 1.21225 0.84577 0.94741 0.95127 1.17614 0.93396 0.81271 0.92575 0.93537 1.59324 1.04461 1.18739 1.55011 1.21758 1.52219 0.91999 0.92910 0.92249 1.25014 0.93989 0.96652 0.97828 1.69730 1.49574 1.02749 1.30964 0.86432 0.78393 0.78197 0.84081 1.20363 1.21005 1.19829 1.21201 0.98212 0.88817 1.15830 1.19368 0.91821 0.94215 1.05453 1.20027 0.99399 0.89852 0.97989 1.20413 0.91766 0.99141 1.08852 1.16887 0.89577 0.79893 1.06550 1.91415 1.80463 1.46253 1.94395 0.91303 0.91911 0.91275 0.82260 0.87239 0.92192 0.83991 0.85518 0.85516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 9.83 36.01 0.35 -1.04 16 2 C -0.13 -2.07 5.90 -104.40 -0.62 -2.69 16 3 C 0.11 1.97 6.95 -84.00 -0.58 1.39 16 4 N -0.59 -10.77 6.07 -6.95 -0.04 -10.81 16 5 H 0.41 6.67 8.87 -40.82 -0.36 6.31 16 6 C 0.15 3.17 6.09 -81.75 -0.50 2.68 16 7 C 0.26 6.14 3.23 -70.02 -0.23 5.92 16 8 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 9 N -0.84 -19.02 9.03 -6.65 -0.06 -19.08 16 10 C -0.55 -13.98 8.71 -34.44 -0.30 -14.28 16 11 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 12 C 0.07 1.75 5.38 -17.82 -0.10 1.65 16 13 N -0.89 -23.25 11.53 55.43 0.64 -22.61 16 14 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 15 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 18 C -0.22 -4.30 10.33 -37.66 -0.39 -4.69 16 19 C -0.10 -1.88 6.37 -105.12 -0.67 -2.55 16 20 C -0.05 -0.83 10.05 -39.65 -0.40 -1.23 16 21 C -0.18 -2.64 9.95 -39.88 -0.40 -3.04 16 22 C 0.09 1.42 7.23 -39.40 -0.28 1.13 16 23 F -0.15 -2.19 16.44 2.25 0.04 -2.16 16 24 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.06 0.75 8.00 -51.93 -0.42 0.34 16 26 H 0.07 0.83 7.63 -51.93 -0.40 0.43 16 27 H 0.36 8.66 7.07 -39.29 -0.28 8.38 16 28 H 0.32 6.82 7.93 -39.30 -0.31 6.51 16 29 H 0.27 6.70 8.31 -40.82 -0.34 6.37 16 30 H 0.14 2.66 7.39 -52.49 -0.39 2.27 16 31 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 32 H 0.13 1.51 8.06 -52.48 -0.42 1.08 16 LS Contribution 279.28 15.07 4.21 4.21 Total: -1.00 -26.61 279.28 -7.72 -34.34 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: -3.38 Total: 17.75 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: -4.10 Total: -16.75 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: 0.54 Total: -52.50 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.16 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -26.61 -7.72 -34.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309358038.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.288 kcal (2) G-P(sol) polarization free energy of solvation -26.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds