Wall clock time and date at job start Mon Mar 30 2020 06:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39116 * 120.11851 * 2 1 4 4 N 1.37684 * 133.47729 * 0.32632 * 3 2 1 5 5 H 0.97001 * 125.07059 * 359.97438 * 4 3 2 6 6 C 1.36902 * 109.86712 * 180.10931 * 4 3 2 7 7 C 1.50697 * 125.04036 * 179.88550 * 6 4 3 8 8 H 1.09004 * 109.47205 * 334.71915 * 7 6 4 9 9 N 1.46901 * 109.47277 * 214.72180 * 7 6 4 10 10 C 1.50700 * 109.47266 * 94.71822 * 7 6 4 11 11 H 1.07999 * 119.99988 * 0.02562 * 10 7 6 12 12 C 1.37885 * 120.00047 * 180.02562 * 10 7 6 13 13 N 1.31518 * 119.99792 * 359.72305 * 12 10 7 14 14 Si 1.86795 * 120.00009 * 180.02562 * 12 10 7 15 15 H 1.48501 * 109.47088 * 89.99795 * 14 12 10 16 16 H 1.48495 * 109.47293 * 209.99997 * 14 12 10 17 17 H 1.48507 * 109.47015 * 329.99955 * 14 12 10 18 18 C 1.34212 * 109.92364 * 359.61836 * 6 4 3 19 19 C 1.40662 * 119.35958 * 180.02562 * 3 2 1 20 20 C 1.39631 * 119.96534 * 359.97137 * 19 3 2 21 21 C 1.36608 * 119.79676 * 0.02562 * 20 19 3 22 22 C 1.37946 * 120.12042 * 179.97438 * 2 1 3 23 23 F 1.35106 * 119.69587 * 359.97438 * 22 2 1 24 24 H 1.09000 * 109.47185 * 270.00312 * 1 2 3 25 25 H 1.09001 * 109.47332 * 30.00919 * 1 2 3 26 26 H 1.09004 * 109.47157 * 150.00284 * 1 2 3 27 27 H 1.00903 * 111.00044 * 176.04170 * 9 7 6 28 28 H 1.00893 * 110.99930 * 299.99775 * 9 7 6 29 29 H 0.97000 * 119.99468 * 179.97438 * 13 12 10 30 30 H 1.07996 * 126.49867 * 180.24566 * 18 6 4 31 31 H 1.08002 * 120.10236 * 179.97438 * 20 19 3 32 32 H 1.08011 * 119.74510 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2051 1.2033 0.0000 4 7 1.8163 2.5241 0.0057 5 1 0.8973 2.8346 0.0107 6 6 2.9200 3.3341 0.0001 7 6 2.8876 4.8407 0.0014 8 1 1.9483 5.1843 -0.4321 9 7 4.0108 5.3553 -0.7934 10 6 3.0016 5.3445 1.4171 11 1 3.0891 4.6437 2.2342 12 6 2.9940 6.7000 1.6692 13 7 2.8929 7.5535 0.6737 14 14 3.1360 7.3245 3.4240 15 1 4.5678 7.5207 3.7653 16 1 2.4156 8.6169 3.5493 17 1 2.5373 6.3320 4.3525 18 6 4.0352 2.5874 -0.0008 19 6 3.6116 1.1847 -0.0005 20 6 4.2929 -0.0341 -0.0005 21 6 3.5894 -1.2051 -0.0004 22 6 2.1993 -1.1932 0.0005 23 9 1.5200 -2.3611 0.0016 24 1 -0.3633 0.0001 1.0277 25 1 -0.3634 0.8899 -0.5140 26 1 -0.3634 -0.8900 -0.5138 27 1 3.9744 6.3614 -0.8617 28 1 4.8935 5.0504 -0.4117 29 1 2.8872 8.5071 0.8511 30 1 5.0520 2.9514 -0.0010 31 1 5.3728 -0.0510 -0.0013 32 1 4.1173 -2.1474 0.0001 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309358038.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:56 Heat of formation + Delta-G solvation = -20.795745 kcal Electronic energy + Delta-G solvation = -17358.902791 eV Core-core repulsion = 14425.716273 eV Total energy + Delta-G solvation = -2933.186518 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.80634 -42.19793 -38.12266 -36.23083 -34.22657 -33.22806 -30.88700 -29.35719 -27.91424 -27.70243 -24.69172 -23.04628 -21.77665 -20.87725 -19.04136 -18.60503 -17.89658 -17.02044 -16.66199 -16.52922 -16.10231 -15.47810 -15.34960 -14.75632 -14.52653 -14.31110 -14.12450 -13.93495 -13.86072 -13.55879 -13.13482 -12.84380 -12.77946 -12.54491 -12.18208 -11.91209 -11.89182 -11.71820 -10.77305 -10.34848 -9.30423 -9.03537 -8.50872 -8.14918 -6.43813 0.06727 0.56602 1.36862 1.39838 1.48601 1.88042 2.15276 2.37450 2.81998 3.01642 3.45420 3.72504 3.94916 3.97106 4.19024 4.34738 4.48667 4.60380 4.64933 4.75124 4.89861 4.95150 5.09183 5.18308 5.23134 5.29282 5.50587 5.60159 5.85274 5.92676 6.06138 6.26194 6.56678 6.67800 6.85644 7.07651 7.33768 8.76768 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.034976 B = 0.005423 C = 0.005256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.362783 B = 5162.339355 C = 5326.340065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.139 4.139 3 C 0.098 3.902 4 N -0.584 5.584 5 H 0.418 0.582 6 C 0.124 3.876 7 C 0.269 3.731 8 H 0.019 0.981 9 N -0.837 5.837 10 C -0.561 4.561 11 H 0.047 0.953 12 C 0.029 3.971 13 N -0.911 5.911 14 Si 0.960 3.040 15 H -0.273 1.273 16 H -0.280 1.280 17 H -0.276 1.276 18 C -0.219 4.219 19 C -0.128 4.128 20 C -0.052 4.052 21 C -0.174 4.174 22 C 0.090 3.910 23 F -0.141 7.141 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.351 0.649 28 H 0.324 0.676 29 H 0.270 0.730 30 H 0.146 0.854 31 H 0.154 0.846 32 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.668 -12.966 -0.776 13.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.142 4.142 3 C -0.010 4.010 4 N -0.187 5.187 5 H 0.255 0.745 6 C 0.015 3.985 7 C 0.157 3.843 8 H 0.037 0.963 9 N -0.367 5.367 10 C -0.601 4.601 11 H 0.065 0.935 12 C -0.172 4.172 13 N -0.550 5.550 14 Si 0.785 3.215 15 H -0.199 1.199 16 H -0.206 1.206 17 H -0.201 1.201 18 C -0.242 4.242 19 C -0.133 4.133 20 C -0.071 4.071 21 C -0.194 4.194 22 C 0.070 3.930 23 F -0.120 7.120 24 H 0.096 0.904 25 H 0.086 0.914 26 H 0.099 0.901 27 H 0.167 0.833 28 H 0.134 0.866 29 H 0.080 0.920 30 H 0.163 0.837 31 H 0.172 0.828 32 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -1.143 -13.146 -1.444 13.275 hybrid contribution -0.344 1.235 1.730 2.153 sum -1.487 -11.911 0.286 12.007 Atomic orbital electron populations 1.20635 0.89059 1.03584 1.03115 1.18860 0.97297 0.89071 1.09019 1.17876 0.93895 0.84539 1.04714 1.41711 1.08744 1.03442 1.64795 0.74461 1.20836 0.85975 0.93663 0.98008 1.17356 0.92306 0.83220 0.91382 0.96265 1.59292 1.04647 1.17914 1.54819 1.21914 1.52439 0.92138 0.93610 0.93517 1.25665 0.93710 0.96799 1.01059 1.69814 1.49888 1.02939 1.32375 0.85532 0.78392 0.77497 0.80039 1.19872 1.20568 1.20147 1.21358 0.98033 0.89944 1.14914 1.19589 0.92343 0.94415 1.06938 1.20341 1.00864 0.88908 0.96943 1.20773 0.91421 1.00193 1.06971 1.17102 0.90218 0.79895 1.05801 1.91433 1.80464 1.45826 1.94259 0.90446 0.91350 0.90081 0.83330 0.86590 0.92027 0.83671 0.82843 0.82303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.60 9.83 71.24 0.70 -1.90 16 2 C -0.14 -4.19 5.90 -19.72 -0.12 -4.31 16 3 C 0.10 3.44 6.95 39.03 0.27 3.71 16 4 N -0.58 -21.71 6.07 -175.90 -1.07 -22.78 16 5 H 0.42 13.82 8.87 -92.71 -0.82 13.00 16 6 C 0.12 5.28 6.09 40.85 0.25 5.52 16 7 C 0.27 12.92 3.23 43.42 0.14 13.06 16 8 H 0.02 1.02 8.14 -2.38 -0.02 1.00 16 9 N -0.84 -38.46 9.03 -174.95 -1.58 -40.04 16 10 C -0.56 -29.08 8.71 25.60 0.22 -28.86 16 11 H 0.05 2.49 7.74 -2.91 -0.02 2.47 16 12 C 0.03 1.48 5.38 84.66 0.46 1.94 16 13 N -0.91 -47.98 11.53 21.45 0.25 -47.73 16 14 Si 0.96 41.35 29.54 68.60 2.03 43.37 16 15 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 16 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 17 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 18 C -0.22 -8.65 10.33 23.51 0.24 -8.40 16 19 C -0.13 -4.53 6.37 -20.19 -0.13 -4.65 16 20 C -0.05 -1.47 10.05 22.22 0.22 -1.25 16 21 C -0.17 -4.46 9.95 22.08 0.22 -4.24 16 22 C 0.09 2.56 7.23 22.39 0.16 2.72 16 23 F -0.14 -3.80 16.44 44.97 0.74 -3.06 16 24 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.07 1.56 8.00 -2.39 -0.02 1.54 16 26 H 0.08 1.75 7.63 -2.38 -0.02 1.73 16 27 H 0.35 17.24 7.07 -89.69 -0.63 16.60 16 28 H 0.32 14.09 7.93 -89.70 -0.71 13.37 16 29 H 0.27 13.55 8.31 -92.71 -0.77 12.78 16 30 H 0.15 5.44 7.39 -2.91 -0.02 5.42 16 31 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 32 H 0.16 3.04 8.06 -2.90 -0.02 3.02 16 Total: -1.00 -56.03 279.28 2.02 -54.01 By element: Atomic # 1 Polarization: 43.87 SS G_CDS: -0.99 Total: 42.88 kcal Atomic # 6 Polarization: -29.30 SS G_CDS: 2.64 Total: -26.66 kcal Atomic # 7 Polarization: -108.15 SS G_CDS: -2.40 Total: -110.55 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.74 Total: -3.06 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.37 kcal Total: -56.03 2.02 -54.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309358038.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.212 kcal (2) G-P(sol) polarization free energy of solvation -56.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds