Wall clock time and date at job start Mon Mar 30 2020 06:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46616 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47104 * 299.99522 * 3 2 1 6 6 H 1.48489 * 109.47200 * 59.99802 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.47319 * 180.02562 * 10 9 7 12 12 C 1.35900 * 117.00172 * 179.97438 * 11 10 9 13 13 C 1.38640 * 119.94982 * 0.02562 * 12 11 10 14 14 C 1.38120 * 119.87304 * 179.97438 * 13 12 11 15 15 C 1.38173 * 119.99667 * 0.02562 * 14 13 12 16 16 C 1.38495 * 120.33024 * 0.02562 * 15 14 13 17 17 C 1.38169 * 119.88491 * 359.70578 * 16 15 14 18 18 C 1.51368 * 109.78105 * 179.83943 * 17 16 15 19 19 H 1.08996 * 110.17178 * 102.09483 * 18 17 16 20 20 O 1.42895 * 110.45411 * 224.17129 * 18 17 16 21 21 C 1.54352 * 105.22661 * 343.20578 * 18 17 16 22 22 C 1.51386 * 130.36312 * 180.02562 * 16 15 14 23 23 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 25 25 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 26 26 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 27 27 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 28 28 H 1.08009 * 120.06563 * 359.96024 * 13 12 11 29 29 H 1.08000 * 119.99960 * 179.97438 * 14 13 12 30 30 H 1.08001 * 119.83150 * 179.97438 * 15 14 13 31 31 H 0.96706 * 113.99832 * 177.36554 * 20 18 17 32 32 H 1.08991 * 110.82544 * 267.89545 * 21 18 17 33 33 H 1.08998 * 110.99176 * 144.41815 * 21 18 17 34 34 H 1.09001 * 110.30092 * 316.07832 * 22 16 15 35 35 H 1.08993 * 110.30552 * 78.13376 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 8 1.5306 -4.8996 -0.0001 12 6 2.2707 -6.0394 -0.0007 13 6 3.6552 -5.9658 -0.0002 14 6 4.4058 -7.1252 -0.0003 15 6 3.7767 -8.3554 -0.0014 16 6 2.3940 -8.4338 -0.0030 17 6 1.6388 -7.2768 0.0027 18 6 0.1660 -7.6263 -0.0044 19 1 -0.2524 -7.5115 0.9955 20 8 -0.5386 -6.8007 -0.9338 21 6 0.1022 -9.1041 -0.4453 22 6 1.4805 -9.6410 -0.0039 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6240 -2.5566 0.8902 26 1 2.8718 -3.6044 0.8905 27 1 2.8718 -3.6044 -0.8895 28 1 4.1458 -5.0035 0.0001 29 1 5.4844 -7.0702 -0.0003 30 1 4.3663 -9.2603 -0.0019 31 1 -1.4801 -7.0085 -1.0093 32 1 -0.0159 -9.1813 -1.5261 33 1 -0.7015 -9.6308 0.0693 34 1 1.8403 -10.3870 -0.7126 35 1 1.4187 -10.0693 0.9964 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309472972.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:00 Heat of formation + Delta-G solvation = -74.733074 kcal Electronic energy + Delta-G solvation = -17570.091731 eV Core-core repulsion = 14725.733869 eV Total energy + Delta-G solvation = -2844.357862 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.34466 -38.06671 -36.43700 -34.10285 -33.31161 -30.75589 -29.30200 -28.88940 -26.28898 -24.97233 -22.40506 -21.70466 -20.75271 -19.96611 -17.49143 -17.24113 -16.21692 -15.74834 -15.35029 -15.18030 -14.69123 -14.50107 -14.11608 -13.73273 -13.11817 -12.79752 -12.66385 -12.28652 -11.94280 -11.86567 -11.52036 -11.29865 -11.16166 -10.88026 -10.78200 -10.65909 -10.37922 -9.92932 -9.77590 -9.60302 -9.23421 -8.51159 -8.41161 -7.75201 -6.06556 -4.10881 1.42744 1.69988 3.28727 3.35594 3.39451 3.87561 3.92618 4.32894 4.43825 4.51978 4.64007 4.94543 5.08104 5.19949 5.23863 5.29781 5.42163 5.53495 5.62614 5.72574 5.78219 5.93057 6.03300 6.09637 6.13811 6.15093 6.55192 6.59773 6.66257 6.77268 7.01717 7.56773 7.71235 7.83948 7.89288 8.14865 8.29175 8.95100 9.53093 11.05095 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.034798 B = 0.004833 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.448106 B = 5792.039225 C = 6528.630871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.525 4.525 8 H 0.058 0.942 9 C 0.027 3.973 10 C 0.062 3.938 11 O -0.300 6.300 12 C 0.178 3.822 13 C -0.220 4.220 14 C -0.072 4.072 15 C -0.164 4.164 16 C -0.057 4.057 17 C -0.143 4.143 18 C 0.156 3.844 19 H 0.066 0.934 20 O -0.546 6.546 21 C -0.154 4.154 22 C -0.077 4.077 23 H 0.262 0.738 24 H 0.029 0.971 25 H 0.027 0.973 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.133 0.867 29 H 0.124 0.876 30 H 0.118 0.882 31 H 0.372 0.628 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.118 -19.041 0.412 19.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.563 4.563 8 H 0.076 0.924 9 C -0.010 4.010 10 C -0.012 4.012 11 O -0.212 6.212 12 C 0.130 3.870 13 C -0.239 4.239 14 C -0.090 4.090 15 C -0.183 4.183 16 C -0.057 4.057 17 C -0.144 4.144 18 C 0.097 3.903 19 H 0.084 0.916 20 O -0.350 6.350 21 C -0.192 4.192 22 C -0.114 4.114 23 H 0.072 0.928 24 H 0.047 0.953 25 H 0.045 0.955 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.151 0.849 29 H 0.142 0.858 30 H 0.136 0.864 31 H 0.219 0.781 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.340 -18.602 0.340 18.902 hybrid contribution 0.229 0.826 0.103 0.864 sum 3.569 -17.776 0.444 18.136 Atomic orbital electron populations 1.69998 1.06091 1.26763 1.49905 1.24990 0.94892 0.99340 0.94977 0.86441 0.79989 0.83326 0.77689 1.19659 1.20843 1.20867 1.21028 0.93061 0.90279 1.51964 0.92368 1.19098 0.94132 0.88910 0.98890 1.23336 0.97122 0.81276 0.99439 1.86293 1.35938 1.12799 1.86148 1.18781 0.89711 0.86651 0.91808 1.21312 0.92763 1.00032 1.09810 1.20818 0.99418 0.91691 0.97053 1.20342 0.92754 0.97597 1.07586 1.20238 0.93362 0.94351 0.97740 1.19465 0.94621 0.90949 1.09384 1.20979 0.88926 0.88004 0.92405 0.91622 1.86757 1.24748 1.60149 1.63345 1.23087 0.97286 0.96312 1.02483 1.20962 0.93094 0.95348 1.02020 0.92817 0.95307 0.95489 0.93311 0.93248 0.84882 0.85847 0.86443 0.78143 0.89985 0.90419 0.90509 0.89985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.93 13.29 55.43 0.74 -26.20 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.53 -15.01 9.11 -34.44 -0.31 -15.32 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.03 0.73 5.34 -27.89 -0.15 0.58 16 10 C 0.06 1.42 4.68 37.16 0.17 1.59 16 11 O -0.30 -6.69 9.78 -19.43 -0.19 -6.88 16 12 C 0.18 3.42 6.68 -39.17 -0.26 3.16 16 13 C -0.22 -3.69 9.03 -39.48 -0.36 -4.05 16 14 C -0.07 -0.99 10.04 -39.65 -0.40 -1.39 16 15 C -0.16 -2.14 10.04 -39.51 -0.40 -2.53 16 16 C -0.06 -0.78 6.13 -104.22 -0.64 -1.42 16 17 C -0.14 -2.41 5.81 -104.06 -0.60 -3.01 16 18 C 0.16 2.23 4.16 -26.85 -0.11 2.12 16 19 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 20 O -0.55 -8.71 13.05 -35.23 -0.46 -9.17 16 21 C -0.15 -1.57 6.80 -25.31 -0.17 -1.75 16 22 C -0.08 -0.78 6.77 -26.83 -0.18 -0.97 16 23 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 24 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.05 1.04 7.66 -51.93 -0.40 0.64 16 27 H 0.05 1.07 7.66 -51.93 -0.40 0.68 16 28 H 0.13 2.17 6.29 -52.48 -0.33 1.84 16 29 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 30 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 31 H 0.37 3.93 9.11 45.56 0.41 4.35 16 32 H 0.08 0.84 8.11 -51.93 -0.42 0.42 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 296.87 15.07 4.47 4.47 Total: -1.00 -33.31 296.87 -8.02 -41.34 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -4.05 Total: 1.23 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: -3.51 Total: -21.36 kcal Atomic # 7 Polarization: -26.93 SS G_CDS: 0.74 Total: -26.20 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.65 Total: -16.05 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -33.31 -8.02 -41.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309472972.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.396 kcal (2) G-P(sol) polarization free energy of solvation -33.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds