Wall clock time and date at job start Mon Mar 30 2020 06:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46616 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47104 * 299.99522 * 3 2 1 6 6 H 1.48489 * 109.47200 * 59.99802 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.47319 * 180.02562 * 10 9 7 12 12 C 1.35900 * 117.00172 * 179.97438 * 11 10 9 13 13 C 1.38640 * 119.94982 * 0.02562 * 12 11 10 14 14 C 1.38120 * 119.87304 * 179.97438 * 13 12 11 15 15 C 1.38173 * 119.99667 * 0.02562 * 14 13 12 16 16 C 1.38495 * 120.33024 * 0.02562 * 15 14 13 17 17 C 1.38169 * 119.88491 * 359.70578 * 16 15 14 18 18 C 1.51368 * 109.78105 * 179.83943 * 17 16 15 19 19 H 1.08996 * 110.17178 * 102.09483 * 18 17 16 20 20 O 1.42895 * 110.45411 * 224.17129 * 18 17 16 21 21 C 1.54352 * 105.22661 * 343.20578 * 18 17 16 22 22 C 1.51386 * 130.36312 * 180.02562 * 16 15 14 23 23 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 25 25 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 26 26 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 27 27 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 28 28 H 1.08009 * 120.06563 * 359.96024 * 13 12 11 29 29 H 1.08000 * 119.99960 * 179.97438 * 14 13 12 30 30 H 1.08001 * 119.83150 * 179.97438 * 15 14 13 31 31 H 0.96706 * 113.99832 * 177.36554 * 20 18 17 32 32 H 1.08991 * 110.82544 * 267.89545 * 21 18 17 33 33 H 1.08998 * 110.99176 * 144.41815 * 21 18 17 34 34 H 1.09001 * 110.30092 * 316.07832 * 22 16 15 35 35 H 1.08993 * 110.30552 * 78.13376 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 8 1.5306 -4.8996 -0.0001 12 6 2.2707 -6.0394 -0.0007 13 6 3.6552 -5.9658 -0.0002 14 6 4.4058 -7.1252 -0.0003 15 6 3.7767 -8.3554 -0.0014 16 6 2.3940 -8.4338 -0.0030 17 6 1.6388 -7.2768 0.0027 18 6 0.1660 -7.6263 -0.0044 19 1 -0.2524 -7.5115 0.9955 20 8 -0.5386 -6.8007 -0.9338 21 6 0.1022 -9.1041 -0.4453 22 6 1.4805 -9.6410 -0.0039 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6240 -2.5566 0.8902 26 1 2.8718 -3.6044 0.8905 27 1 2.8718 -3.6044 -0.8895 28 1 4.1458 -5.0035 0.0001 29 1 5.4844 -7.0702 -0.0003 30 1 4.3663 -9.2603 -0.0019 31 1 -1.4801 -7.0085 -1.0093 32 1 -0.0159 -9.1813 -1.5261 33 1 -0.7015 -9.6308 0.0693 34 1 1.8403 -10.3870 -0.7126 35 1 1.4187 -10.0693 0.9964 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309472972.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:59 Heat of formation + Delta-G solvation = -97.666865 kcal Electronic energy + Delta-G solvation = -17571.086215 eV Core-core repulsion = 14725.733869 eV Total energy + Delta-G solvation = -2845.352346 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.53246 -39.46863 -37.63232 -35.55132 -35.09665 -32.57776 -30.76860 -29.96345 -27.32883 -26.98800 -23.77241 -23.21166 -21.85277 -21.39975 -19.07494 -18.38803 -18.06737 -17.15822 -16.89462 -16.55503 -16.45258 -15.64845 -15.22909 -14.81947 -14.41471 -14.27229 -14.17812 -14.13771 -13.22283 -13.15724 -12.85190 -12.75735 -12.57623 -12.49815 -12.24813 -12.00041 -11.74835 -11.56500 -11.49871 -11.38002 -10.98549 -10.64686 -9.60536 -9.06774 -8.28176 -6.42639 0.29262 0.49706 1.39362 1.41056 1.54596 2.28322 2.53553 2.72687 3.05824 3.38488 3.51250 3.67311 4.02575 4.07177 4.12022 4.19565 4.22419 4.29674 4.43911 4.63663 4.67420 4.70788 4.82044 4.91759 5.03022 5.10176 5.25144 5.30230 5.42449 5.43646 5.48586 5.56408 5.67233 5.91988 6.05799 6.56774 6.72057 6.96603 7.27622 8.85472 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.034798 B = 0.004833 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.448106 B = 5792.039225 C = 6528.630871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.979 3.021 4 H -0.258 1.258 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.070 0.930 9 C 0.033 3.967 10 C 0.083 3.917 11 O -0.330 6.330 12 C 0.129 3.871 13 C -0.236 4.236 14 C -0.071 4.071 15 C -0.154 4.154 16 C -0.057 4.057 17 C -0.174 4.174 18 C 0.143 3.857 19 H 0.063 0.937 20 O -0.580 6.580 21 C -0.140 4.140 22 C -0.073 4.073 23 H 0.267 0.733 24 H -0.006 1.006 25 H -0.004 1.004 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.128 0.872 29 H 0.157 0.843 30 H 0.158 0.842 31 H 0.390 0.610 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.047 -21.097 0.512 21.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.802 3.198 4 H -0.181 1.181 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.585 4.585 8 H 0.088 0.912 9 C -0.005 4.005 10 C 0.008 3.992 11 O -0.244 6.244 12 C 0.083 3.917 13 C -0.255 4.255 14 C -0.088 4.088 15 C -0.172 4.172 16 C -0.057 4.057 17 C -0.174 4.174 18 C 0.084 3.916 19 H 0.081 0.919 20 O -0.388 6.388 21 C -0.177 4.177 22 C -0.110 4.110 23 H 0.076 0.924 24 H 0.013 0.987 25 H 0.015 0.985 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.146 0.854 29 H 0.175 0.825 30 H 0.176 0.824 31 H 0.239 0.761 32 H 0.099 0.901 33 H 0.127 0.873 34 H 0.121 0.879 35 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.269 -20.696 0.441 21.361 hybrid contribution -0.393 1.312 0.077 1.372 sum 4.877 -19.384 0.519 19.994 Atomic orbital electron populations 1.70144 1.08128 1.28210 1.50557 1.26079 0.95848 1.03771 0.94002 0.85192 0.78973 0.77622 0.77984 1.18140 1.20101 1.20027 1.21424 0.93786 0.90999 1.52288 0.91175 1.18914 0.94409 0.91421 0.95706 1.22845 0.95454 0.80816 1.00044 1.86197 1.37001 1.13446 1.87738 1.19283 0.90941 0.86162 0.95316 1.21442 0.92109 1.01266 1.10696 1.21233 1.00976 0.90954 0.95681 1.20869 0.92831 0.98686 1.04811 1.20828 0.94132 0.94756 0.95966 1.20049 0.96671 0.91096 1.09615 1.21263 0.87651 0.90427 0.92213 0.91918 1.86701 1.26526 1.61623 1.63929 1.23030 0.98802 0.93121 1.02760 1.21102 0.91674 0.94129 1.04061 0.92389 0.98740 0.98543 0.92372 0.92755 0.85424 0.82540 0.82438 0.76060 0.90053 0.87323 0.87933 0.87688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.26 13.29 21.45 0.28 -57.98 16 2 C 0.00 0.09 5.46 84.65 0.46 0.55 16 3 Si 0.98 44.59 29.54 68.60 2.03 46.62 16 4 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 5 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.55 -32.24 9.11 25.60 0.23 -32.00 16 8 H 0.07 3.86 7.74 -2.91 -0.02 3.84 16 9 C 0.03 1.91 5.34 29.85 0.16 2.07 16 10 C 0.08 3.99 4.68 71.98 0.34 4.32 16 11 O -0.33 -15.78 9.78 -92.43 -0.90 -16.69 16 12 C 0.13 5.13 6.68 22.53 0.15 5.28 16 13 C -0.24 -7.99 9.03 22.34 0.20 -7.79 16 14 C -0.07 -1.79 10.04 22.23 0.22 -1.57 16 15 C -0.15 -3.45 10.04 22.32 0.22 -3.23 16 16 C -0.06 -1.42 6.13 -19.60 -0.12 -1.54 16 17 C -0.17 -5.85 5.81 -19.50 -0.11 -5.97 16 18 C 0.14 4.09 4.16 30.52 0.13 4.22 16 19 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 20 O -0.58 -19.38 13.05 -148.98 -1.94 -21.32 16 21 C -0.14 -2.49 6.80 31.51 0.21 -2.27 16 22 C -0.07 -1.19 6.77 30.53 0.21 -0.98 16 23 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 24 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 25 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 26 H 0.06 2.62 7.66 -2.39 -0.02 2.60 16 27 H 0.05 2.49 7.66 -2.39 -0.02 2.47 16 28 H 0.13 4.28 6.29 -2.91 -0.02 4.26 16 29 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 30 H 0.16 2.29 8.06 -2.91 -0.02 2.26 16 31 H 0.39 8.69 9.11 -74.05 -0.67 8.02 16 32 H 0.08 1.48 8.11 -2.39 -0.02 1.46 16 33 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -76.43 296.87 2.18 -74.25 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 0.42 Total: 14.03 kcal Atomic # 6 Polarization: -41.21 SS G_CDS: 2.31 Total: -38.91 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: 0.28 Total: -57.98 kcal Atomic # 8 Polarization: -35.16 SS G_CDS: -2.85 Total: -38.01 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -76.43 2.18 -74.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309472972.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.418 kcal (2) G-P(sol) polarization free energy of solvation -76.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds