Wall clock time and date at job start Mon Mar 30 2020 06:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 119.99981 * 2 1 4 4 H 1.48500 * 109.47636 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47198 * 299.99610 * 3 2 1 6 6 H 1.48502 * 109.47237 * 59.99536 * 3 2 1 7 7 C 1.37881 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99979 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99970 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.47143 * 180.02562 * 9 7 2 11 11 C 1.46904 * 110.99927 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.46975 * 179.97438 * 11 10 9 13 13 C 1.34211 * 125.03334 * 94.99996 * 12 11 10 14 14 C 1.46532 * 106.99694 * 179.97438 * 13 12 11 15 15 C 1.39627 * 133.98525 * 180.02562 * 14 13 12 16 16 C 1.36602 * 119.80180 * 180.02562 * 15 14 13 17 17 C 1.39029 * 120.50195 * 0.02562 * 16 15 14 18 18 F 1.35104 * 119.69630 * 179.97438 * 17 16 15 19 19 C 1.37950 * 120.61040 * 0.25209 * 17 16 15 20 20 C 1.39121 * 119.75760 * 359.49726 * 19 17 16 21 21 N 1.36898 * 125.04017 * 274.97635 * 12 11 10 22 22 H 0.97001 * 125.07043 * 0.04518 * 21 12 11 23 23 H 0.97000 * 120.00118 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46989 * 59.99513 * 9 7 2 25 25 H 1.09006 * 109.47090 * 299.99997 * 9 7 2 26 26 H 1.00900 * 111.00277 * 56.04138 * 10 9 7 27 27 H 1.09007 * 109.46962 * 60.00159 * 11 10 9 28 28 H 1.08990 * 109.46967 * 299.99734 * 11 10 9 29 29 H 1.07993 * 126.50020 * 359.95997 * 13 12 11 30 30 H 1.08000 * 120.09759 * 0.02562 * 15 14 13 31 31 H 1.08000 * 119.75364 * 179.97438 * 16 15 14 32 32 H 1.08003 * 120.11890 * 179.74484 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0018 11 6 1.5054 -4.9071 0.0024 12 6 2.5149 -6.0259 0.0031 13 6 2.9599 -6.6615 1.0982 14 6 3.9222 -7.6702 0.6467 15 6 4.7053 -8.6241 1.2997 16 6 5.5267 -9.4399 0.5747 17 6 5.5897 -9.3277 -0.8097 18 9 6.4081 -10.1426 -1.5107 19 6 4.8286 -8.3880 -1.4736 20 6 3.9818 -7.5514 -0.7536 21 7 3.1137 -6.5450 -1.1133 22 1 2.9519 -6.2470 -2.0221 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 2.8400 -3.5483 0.7835 27 1 0.8808 -4.9822 -0.8879 28 1 0.8802 -4.9808 0.8921 29 1 2.6649 -6.4664 2.1185 30 1 4.6617 -8.7166 2.3749 31 1 6.1323 -10.1772 1.0806 32 1 4.8868 -8.3050 -2.5489 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309516606.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:25 Heat of formation + Delta-G solvation = 4.019985 kcal Electronic energy + Delta-G solvation = -16511.289847 eV Core-core repulsion = 13579.179420 eV Total energy + Delta-G solvation = -2932.110427 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.89977 -41.24039 -37.02615 -35.16608 -32.61116 -31.84259 -29.63930 -29.18510 -26.82876 -24.51069 -22.54799 -21.64520 -21.45453 -20.16944 -18.15688 -17.02093 -16.26700 -16.16285 -15.64985 -15.21790 -14.81013 -14.63616 -14.28418 -13.85188 -13.50781 -13.37360 -13.15448 -12.94112 -12.28704 -12.00565 -11.41325 -11.38596 -11.19107 -11.05120 -10.80534 -10.70721 -10.06089 -9.70030 -9.28659 -8.57007 -8.20727 -7.71580 -7.46457 -6.11179 -4.13582 0.93969 1.43263 2.69888 3.07308 3.26757 3.34390 3.39596 3.71690 4.33672 4.37415 4.58470 4.76473 4.96116 5.17115 5.25081 5.27055 5.32310 5.38119 5.68972 5.81296 5.91400 5.97196 6.02783 6.08044 6.33326 6.70980 6.81963 7.06732 7.12447 7.28144 7.55183 7.67820 8.00508 8.22231 8.45251 8.95415 9.51932 10.99844 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.044473 B = 0.003638 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.446869 B = 7693.847094 C = 7860.883530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.516 4.516 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.687 5.687 11 C 0.110 3.890 12 C 0.113 3.887 13 C -0.206 4.206 14 C -0.114 4.114 15 C -0.042 4.042 16 C -0.183 4.183 17 C 0.109 3.891 18 F -0.143 7.143 19 C -0.165 4.165 20 C 0.120 3.880 21 N -0.577 5.577 22 H 0.419 0.581 23 H 0.262 0.738 24 H 0.029 0.971 25 H -0.010 1.010 26 H 0.335 0.665 27 H 0.077 0.923 28 H 0.052 0.948 29 H 0.147 0.853 30 H 0.131 0.869 31 H 0.132 0.868 32 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.900 -17.268 0.544 18.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.555 4.555 8 H 0.082 0.918 9 C 0.067 3.933 10 N -0.318 5.318 11 C -0.020 4.020 12 C 0.004 3.996 13 C -0.231 4.231 14 C -0.119 4.119 15 C -0.061 4.061 16 C -0.203 4.203 17 C 0.088 3.912 18 F -0.122 7.122 19 C -0.186 4.186 20 C 0.010 3.990 21 N -0.180 5.180 22 H 0.256 0.744 23 H 0.071 0.929 24 H 0.047 0.953 25 H 0.008 0.992 26 H 0.152 0.848 27 H 0.095 0.905 28 H 0.070 0.930 29 H 0.165 0.835 30 H 0.149 0.851 31 H 0.150 0.850 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.786 -17.074 -0.285 18.375 hybrid contribution 0.127 0.930 0.242 0.969 sum 6.913 -16.144 -0.043 17.562 Atomic orbital electron populations 1.69961 1.06096 1.26844 1.50745 1.24988 0.94896 0.99450 0.95195 0.86410 0.80073 0.83181 0.77570 1.19621 1.20959 1.21000 1.21188 0.93602 0.90071 1.50590 0.91838 1.19607 0.90525 0.87137 0.96047 1.60770 1.21182 1.00270 1.49569 1.20602 0.92209 0.87385 1.01826 1.20591 0.97168 0.96402 0.85397 1.21462 1.03131 1.00366 0.98112 1.19256 1.00967 0.99576 0.92063 1.20089 0.93546 0.92775 0.99662 1.20531 1.04082 1.03790 0.91894 1.17110 0.92796 0.91672 0.89592 1.91473 1.70504 1.70985 1.79230 1.19762 1.00473 0.98433 0.99977 1.17780 0.94792 0.92528 0.93859 1.41788 1.36416 1.30329 1.09417 0.74376 0.92861 0.95280 0.99178 0.84779 0.90501 0.93047 0.83490 0.85102 0.85043 0.85156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.18 13.29 55.43 0.74 -25.44 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.24 9.32 -34.44 -0.32 -14.56 16 8 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 9 C 0.19 4.82 5.44 -4.98 -0.03 4.80 16 10 N -0.69 -13.83 6.48 -116.34 -0.75 -14.58 16 11 C 0.11 1.77 6.19 -4.97 -0.03 1.74 16 12 C 0.11 1.65 6.60 -81.75 -0.54 1.11 16 13 C -0.21 -2.85 10.95 -37.66 -0.41 -3.26 16 14 C -0.11 -1.54 6.37 -105.12 -0.67 -2.21 16 15 C -0.04 -0.48 10.05 -39.65 -0.40 -0.88 16 16 C -0.18 -2.02 9.95 -39.88 -0.40 -2.42 16 17 C 0.11 1.33 7.28 -39.39 -0.29 1.04 16 18 F -0.14 -1.77 17.25 2.25 0.04 -1.73 16 19 C -0.16 -2.03 10.05 -39.36 -0.40 -2.43 16 20 C 0.12 1.62 7.28 -83.99 -0.61 1.01 16 21 N -0.58 -7.73 6.07 -6.95 -0.04 -7.77 16 22 H 0.42 4.84 8.96 -40.82 -0.37 4.47 16 23 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 24 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 25 H -0.01 -0.25 8.14 -51.93 -0.42 -0.67 16 26 H 0.34 6.62 8.71 -39.29 -0.34 6.28 16 27 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.15 1.79 8.06 -52.49 -0.42 1.37 16 30 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 31 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 32 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 LS Contribution 287.47 15.07 4.33 4.33 Total: -1.00 -29.83 287.47 -8.53 -38.36 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -3.64 Total: 5.13 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -4.19 Total: -14.58 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: -0.06 Total: -47.80 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.83 -8.53 -38.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309516606.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.377 kcal (2) G-P(sol) polarization free energy of solvation -29.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds