Wall clock time and date at job start Mon Mar 30 2020 06:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 119.99981 * 2 1 4 4 H 1.48500 * 109.47636 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47198 * 299.99610 * 3 2 1 6 6 H 1.48502 * 109.47237 * 59.99536 * 3 2 1 7 7 C 1.37881 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99979 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99970 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.47143 * 180.02562 * 9 7 2 11 11 C 1.46904 * 110.99927 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.46975 * 179.97438 * 11 10 9 13 13 C 1.34211 * 125.03334 * 94.99996 * 12 11 10 14 14 C 1.46532 * 106.99694 * 179.97438 * 13 12 11 15 15 C 1.39627 * 133.98525 * 180.02562 * 14 13 12 16 16 C 1.36602 * 119.80180 * 180.02562 * 15 14 13 17 17 C 1.39029 * 120.50195 * 0.02562 * 16 15 14 18 18 F 1.35104 * 119.69630 * 179.97438 * 17 16 15 19 19 C 1.37950 * 120.61040 * 0.25209 * 17 16 15 20 20 C 1.39121 * 119.75760 * 359.49726 * 19 17 16 21 21 N 1.36898 * 125.04017 * 274.97635 * 12 11 10 22 22 H 0.97001 * 125.07043 * 0.04518 * 21 12 11 23 23 H 0.97000 * 120.00118 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46989 * 59.99513 * 9 7 2 25 25 H 1.09006 * 109.47090 * 299.99997 * 9 7 2 26 26 H 1.00900 * 111.00277 * 56.04138 * 10 9 7 27 27 H 1.09007 * 109.46962 * 60.00159 * 11 10 9 28 28 H 1.08990 * 109.46967 * 299.99734 * 11 10 9 29 29 H 1.07993 * 126.50020 * 359.95997 * 13 12 11 30 30 H 1.08000 * 120.09759 * 0.02562 * 15 14 13 31 31 H 1.08000 * 119.75364 * 179.97438 * 16 15 14 32 32 H 1.08003 * 120.11890 * 179.74484 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0018 11 6 1.5054 -4.9071 0.0024 12 6 2.5149 -6.0259 0.0031 13 6 2.9599 -6.6615 1.0982 14 6 3.9222 -7.6702 0.6467 15 6 4.7053 -8.6241 1.2997 16 6 5.5267 -9.4399 0.5747 17 6 5.5897 -9.3277 -0.8097 18 9 6.4081 -10.1426 -1.5107 19 6 4.8286 -8.3880 -1.4736 20 6 3.9818 -7.5514 -0.7536 21 7 3.1137 -6.5450 -1.1133 22 1 2.9519 -6.2470 -2.0221 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 2.8400 -3.5483 0.7835 27 1 0.8808 -4.9822 -0.8879 28 1 0.8802 -4.9808 0.8921 29 1 2.6649 -6.4664 2.1185 30 1 4.6617 -8.7166 2.3749 31 1 6.1323 -10.1772 1.0806 32 1 4.8868 -8.3050 -2.5489 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309516606.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:25 Heat of formation + Delta-G solvation = -14.683616 kcal Electronic energy + Delta-G solvation = -16512.100896 eV Core-core repulsion = 13579.179420 eV Total energy + Delta-G solvation = -2932.921476 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.85320 -42.25105 -38.10489 -36.74047 -34.55804 -32.90016 -30.85317 -30.33869 -28.42389 -26.01479 -23.71130 -23.29442 -22.54203 -21.26006 -19.17434 -18.68162 -17.66161 -17.21907 -16.69884 -16.59483 -16.19805 -16.01173 -15.63349 -14.90540 -14.82562 -14.71118 -14.37264 -14.16017 -13.76078 -13.36501 -13.21595 -12.78953 -12.65699 -12.39939 -12.23948 -12.03001 -11.94543 -11.33114 -10.71421 -10.67334 -9.25283 -9.15432 -8.68415 -8.23563 -6.34309 -0.02608 0.49766 1.41372 1.42237 1.55308 1.61547 2.06101 2.40071 2.76888 3.10279 3.40094 3.51989 3.73609 3.85576 4.10722 4.20950 4.22218 4.39719 4.49793 4.64736 4.82482 4.96829 5.06415 5.08259 5.18440 5.25109 5.41031 5.59154 5.75010 5.80461 5.99420 6.11647 6.36701 6.57160 6.64788 6.85866 7.36608 8.87665 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.044473 B = 0.003638 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.446869 B = 7693.847094 C = 7860.883530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.536 4.536 8 H 0.062 0.938 9 C 0.207 3.793 10 N -0.685 5.685 11 C 0.116 3.884 12 C 0.096 3.904 13 C -0.201 4.201 14 C -0.135 4.135 15 C -0.039 4.039 16 C -0.180 4.180 17 C 0.103 3.897 18 F -0.145 7.145 19 C -0.173 4.173 20 C 0.107 3.893 21 N -0.578 5.578 22 H 0.424 0.576 23 H 0.265 0.735 24 H 0.005 0.995 25 H -0.030 1.030 26 H 0.338 0.662 27 H 0.077 0.923 28 H 0.059 0.941 29 H 0.161 0.839 30 H 0.158 0.842 31 H 0.158 0.842 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.298 -17.900 1.120 19.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.195 4.195 3 Si 0.795 3.205 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.203 1.203 7 C -0.574 4.574 8 H 0.080 0.920 9 C 0.080 3.920 10 N -0.316 5.316 11 C -0.013 4.013 12 C -0.013 4.013 13 C -0.227 4.227 14 C -0.140 4.140 15 C -0.057 4.057 16 C -0.200 4.200 17 C 0.083 3.917 18 F -0.123 7.123 19 C -0.195 4.195 20 C -0.002 4.002 21 N -0.180 5.180 22 H 0.262 0.738 23 H 0.074 0.926 24 H 0.024 0.976 25 H -0.013 1.013 26 H 0.156 0.844 27 H 0.095 0.905 28 H 0.077 0.923 29 H 0.179 0.821 30 H 0.176 0.824 31 H 0.176 0.824 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 8.195 -17.730 0.284 19.534 hybrid contribution -0.271 0.992 0.064 1.031 sum 7.923 -16.738 0.348 18.522 Atomic orbital electron populations 1.70073 1.07662 1.27978 1.51487 1.25893 0.95767 1.03216 0.94616 0.85317 0.78885 0.78523 0.77766 1.18888 1.20459 1.20254 1.21547 0.93760 0.91470 1.50610 0.91968 1.19245 0.90546 0.88359 0.93857 1.60604 1.20477 1.00769 1.49797 1.20514 0.92619 0.85992 1.02197 1.20281 0.98000 0.96766 0.86270 1.21721 1.02513 0.99896 0.98522 1.19533 1.01724 1.00417 0.92319 1.20411 0.92529 0.91700 1.01091 1.20845 1.03830 1.03909 0.91413 1.17338 0.92623 0.91514 0.90273 1.91472 1.70506 1.70972 1.79383 1.19926 1.00383 0.98388 1.00791 1.17988 0.95100 0.92792 0.94319 1.41760 1.36398 1.30396 1.09472 0.73796 0.92566 0.97641 1.01255 0.84434 0.90451 0.92340 0.82131 0.82406 0.82449 0.83931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.95 13.29 21.45 0.28 -54.66 16 2 C 0.00 0.20 5.46 84.66 0.46 0.66 16 3 Si 0.97 43.55 29.54 68.60 2.03 45.58 16 4 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 6 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.54 -29.81 9.32 25.60 0.24 -29.57 16 8 H 0.06 3.40 7.81 -2.91 -0.02 3.38 16 9 C 0.21 10.60 5.44 85.56 0.47 11.07 16 10 N -0.69 -27.82 6.48 -521.97 -3.38 -31.20 16 11 C 0.12 3.76 6.19 85.56 0.53 4.29 16 12 C 0.10 2.73 6.60 40.85 0.27 2.99 16 13 C -0.20 -5.31 10.95 23.51 0.26 -5.05 16 14 C -0.13 -3.44 6.37 -20.19 -0.13 -3.57 16 15 C -0.04 -0.79 10.05 22.22 0.22 -0.56 16 16 C -0.18 -3.48 9.95 22.08 0.22 -3.26 16 17 C 0.10 2.32 7.28 22.39 0.16 2.48 16 18 F -0.14 -3.30 17.25 44.97 0.78 -2.53 16 19 C -0.17 -4.05 10.05 22.41 0.23 -3.83 16 20 C 0.11 2.79 7.28 39.03 0.28 3.07 16 21 N -0.58 -15.16 6.07 -175.89 -1.07 -16.23 16 22 H 0.42 9.72 8.96 -92.71 -0.83 8.89 16 23 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 24 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 25 H -0.03 -1.64 8.14 -2.38 -0.02 -1.66 16 26 H 0.34 13.36 8.71 -89.69 -0.78 12.57 16 27 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 28 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.16 3.64 8.06 -2.91 -0.02 3.62 16 30 H 0.16 2.25 8.06 -2.91 -0.02 2.22 16 31 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16 32 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -62.94 287.47 1.39 -61.55 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: -0.46 Total: 18.77 kcal Atomic # 6 Polarization: -24.49 SS G_CDS: 3.21 Total: -21.28 kcal Atomic # 7 Polarization: -97.93 SS G_CDS: -4.17 Total: -102.09 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.78 Total: -2.53 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -62.94 1.39 -61.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309516606.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.865 kcal (2) G-P(sol) polarization free energy of solvation -62.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds