Wall clock time and date at job start Mon Mar 30 2020 06:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00042 * 2 1 4 4 H 1.48504 * 109.47244 * 240.00401 * 3 2 1 5 5 H 1.48506 * 109.47128 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47486 * 120.00045 * 3 2 1 7 7 C 1.37876 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00150 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00116 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.46990 * 180.02562 * 9 7 2 11 11 C 1.46902 * 110.99573 * 180.02562 * 10 9 7 12 12 C 1.50707 * 109.46656 * 179.97438 * 11 10 9 13 13 C 1.34205 * 125.04309 * 264.69849 * 12 11 10 14 14 C 1.46503 * 106.99155 * 179.86446 * 13 12 11 15 15 C 1.40619 * 106.07342 * 0.38977 * 14 13 12 16 16 C 1.39129 * 119.45178 * 179.76902 * 15 14 13 17 17 C 1.37741 * 119.96125 * 359.97438 * 16 15 14 18 18 C 1.38798 * 120.69453 * 0.02562 * 17 16 15 19 19 C 1.37872 * 120.35326 * 359.97438 * 18 17 16 20 20 F 1.35099 * 120.19316 * 180.02562 * 19 18 17 21 21 N 1.36888 * 125.03697 * 85.00370 * 12 11 10 22 22 H 0.97003 * 125.06161 * 0.03737 * 21 12 11 23 23 H 0.96998 * 120.00296 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47064 * 60.00368 * 9 7 2 25 25 H 1.09000 * 109.47099 * 300.00095 * 9 7 2 26 26 H 1.00896 * 111.00309 * 56.04484 * 10 9 7 27 27 H 1.08990 * 109.47358 * 299.99539 * 11 10 9 28 28 H 1.09004 * 109.47457 * 60.00221 * 11 10 9 29 29 H 1.08005 * 126.50542 * 359.97310 * 13 12 11 30 30 H 1.07997 * 120.01680 * 179.97438 * 16 15 14 31 31 H 1.07995 * 119.65717 * 179.97438 * 17 16 15 32 32 H 1.08001 * 119.82129 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5054 -4.9070 -0.0011 12 6 2.5150 -6.0260 -0.0018 13 6 2.9558 -6.6655 -1.0962 14 6 3.9225 -7.6696 -0.6450 15 6 3.9810 -7.5522 0.7551 16 6 4.8233 -8.3916 1.4773 17 6 5.5903 -9.3280 0.8198 18 6 5.5343 -9.4457 -0.5621 19 6 4.7068 -8.6247 -1.2983 20 9 4.6545 -8.7425 -2.6431 21 7 3.1140 -6.5446 1.1145 22 1 2.9514 -6.2470 2.0233 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8406 -3.5487 0.7808 27 1 0.8803 -4.9818 0.8885 28 1 0.8808 -4.9813 -0.8914 29 1 2.6561 -6.4749 -2.1162 30 1 4.8757 -8.3091 2.5528 31 1 6.2427 -9.9767 1.3852 32 1 6.1421 -10.1845 -1.0632 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309581035.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:05 Heat of formation + Delta-G solvation = 5.146580 kcal Electronic energy + Delta-G solvation = -16651.153251 eV Core-core repulsion = 13719.091677 eV Total energy + Delta-G solvation = -2932.061574 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.75311 -41.21341 -37.10215 -35.17867 -32.56539 -31.64910 -29.81059 -29.01339 -26.96497 -24.49987 -22.43299 -21.78315 -21.35889 -20.22855 -18.24251 -16.76979 -16.26244 -15.91839 -15.59644 -15.35116 -14.86930 -14.68530 -14.56162 -14.15389 -13.29665 -13.19335 -12.90341 -12.78498 -12.06452 -11.73021 -11.58343 -11.45485 -11.37355 -11.20828 -10.77573 -10.72680 -10.03903 -9.57997 -9.30468 -8.55207 -8.30359 -7.62269 -7.45372 -6.09898 -4.12539 0.94718 1.44092 2.73509 3.06764 3.30255 3.34377 3.37790 3.68690 4.29800 4.38326 4.59978 4.79619 5.01371 5.08152 5.23239 5.26150 5.32512 5.50234 5.53697 5.80128 5.97667 5.99196 6.04572 6.20402 6.31991 6.70157 6.81631 7.06349 7.12705 7.26996 7.51141 7.68203 8.01637 8.21333 8.45339 8.95626 9.52774 11.01066 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.038671 B = 0.003899 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.882191 B = 7179.542299 C = 7272.395038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.682 5.682 11 C 0.115 3.885 12 C 0.104 3.896 13 C -0.181 4.181 14 C -0.141 4.141 15 C 0.123 3.877 16 C -0.140 4.140 17 C -0.080 4.080 18 C -0.188 4.188 19 C 0.143 3.857 20 F -0.139 7.139 21 N -0.588 5.588 22 H 0.416 0.584 23 H 0.263 0.737 24 H 0.032 0.968 25 H -0.012 1.012 26 H 0.329 0.671 27 H 0.032 0.968 28 H 0.094 0.906 29 H 0.150 0.850 30 H 0.124 0.876 31 H 0.132 0.868 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.637 -17.885 3.040 19.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.729 3.271 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.556 4.556 8 H 0.081 0.919 9 C 0.067 3.933 10 N -0.313 5.313 11 C -0.015 4.015 12 C -0.003 4.003 13 C -0.206 4.206 14 C -0.147 4.147 15 C 0.014 3.986 16 C -0.161 4.161 17 C -0.100 4.100 18 C -0.208 4.208 19 C 0.124 3.876 20 F -0.117 7.117 21 N -0.191 5.191 22 H 0.254 0.746 23 H 0.073 0.927 24 H 0.050 0.950 25 H 0.006 0.994 26 H 0.145 0.855 27 H 0.050 0.950 28 H 0.113 0.887 29 H 0.168 0.832 30 H 0.142 0.858 31 H 0.150 0.850 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 7.471 -17.652 2.392 19.317 hybrid contribution 0.009 1.038 1.098 1.511 sum 7.480 -16.615 3.491 18.552 Atomic orbital electron populations 1.69944 1.06094 1.27073 1.50559 1.24981 0.94896 0.99419 0.95156 0.86513 0.79413 0.82480 0.78726 1.20049 1.21272 1.20264 1.21113 0.93534 0.90091 1.50877 0.91941 1.19615 0.90485 0.87076 0.96083 1.60745 1.21118 1.00342 1.49065 1.20621 0.91972 0.87132 1.01815 1.20574 0.97703 0.96737 0.85315 1.21369 1.01699 0.99031 0.98465 1.19140 1.02224 1.00255 0.93070 1.17945 0.95041 0.92602 0.92980 1.20035 0.98989 0.97649 0.99390 1.20520 0.98571 0.97691 0.93174 1.20785 1.02870 1.02571 0.94622 1.17081 0.97651 0.96349 0.76560 1.91470 1.95260 1.95150 1.29823 1.41855 1.37156 1.30950 1.09137 0.74639 0.92741 0.94969 0.99400 0.85502 0.95006 0.88744 0.83224 0.85804 0.85017 0.85032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.36 13.29 55.43 0.74 -25.62 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -14.43 9.32 -34.44 -0.32 -14.75 16 8 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 9 C 0.19 4.90 5.44 -4.97 -0.03 4.88 16 10 N -0.68 -14.08 6.48 -116.33 -0.75 -14.83 16 11 C 0.11 1.91 6.20 -4.97 -0.03 1.88 16 12 C 0.10 1.59 6.60 -81.75 -0.54 1.05 16 13 C -0.18 -2.85 10.95 -37.67 -0.41 -3.26 16 14 C -0.14 -2.13 6.36 -105.09 -0.67 -2.80 16 15 C 0.12 1.65 7.27 -84.00 -0.61 1.04 16 16 C -0.14 -1.50 10.07 -39.43 -0.40 -1.90 16 17 C -0.08 -0.78 10.01 -39.56 -0.40 -1.18 16 18 C -0.19 -2.11 10.01 -39.51 -0.40 -2.51 16 19 C 0.14 2.01 7.34 -39.14 -0.29 1.72 16 20 F -0.14 -2.02 17.28 2.25 0.04 -1.98 16 21 N -0.59 -7.65 6.07 -6.95 -0.04 -7.69 16 22 H 0.42 4.32 8.96 -40.82 -0.37 3.95 16 23 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 24 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 25 H -0.01 -0.31 8.14 -51.93 -0.42 -0.73 16 26 H 0.33 6.50 8.72 -39.29 -0.34 6.15 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 29 H 0.15 2.26 8.06 -52.48 -0.42 1.84 16 30 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 31 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 32 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 287.57 15.07 4.33 4.33 Total: -1.00 -30.70 287.57 -8.52 -39.23 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -3.64 Total: 4.44 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: -4.18 Total: -14.32 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: -0.06 Total: -48.14 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.70 -8.52 -39.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309581035.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.372 kcal (2) G-P(sol) polarization free energy of solvation -30.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds