Wall clock time and date at job start Mon Mar 30 2020 06:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00042 * 2 1 4 4 H 1.48504 * 109.47244 * 240.00401 * 3 2 1 5 5 H 1.48506 * 109.47128 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47486 * 120.00045 * 3 2 1 7 7 C 1.37876 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00150 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00116 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.46990 * 180.02562 * 9 7 2 11 11 C 1.46902 * 110.99573 * 180.02562 * 10 9 7 12 12 C 1.50707 * 109.46656 * 179.97438 * 11 10 9 13 13 C 1.34205 * 125.04309 * 264.69849 * 12 11 10 14 14 C 1.46503 * 106.99155 * 179.86446 * 13 12 11 15 15 C 1.40619 * 106.07342 * 0.38977 * 14 13 12 16 16 C 1.39129 * 119.45178 * 179.76902 * 15 14 13 17 17 C 1.37741 * 119.96125 * 359.97438 * 16 15 14 18 18 C 1.38798 * 120.69453 * 0.02562 * 17 16 15 19 19 C 1.37872 * 120.35326 * 359.97438 * 18 17 16 20 20 F 1.35099 * 120.19316 * 180.02562 * 19 18 17 21 21 N 1.36888 * 125.03697 * 85.00370 * 12 11 10 22 22 H 0.97003 * 125.06161 * 0.03737 * 21 12 11 23 23 H 0.96998 * 120.00296 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47064 * 60.00368 * 9 7 2 25 25 H 1.09000 * 109.47099 * 300.00095 * 9 7 2 26 26 H 1.00896 * 111.00309 * 56.04484 * 10 9 7 27 27 H 1.08990 * 109.47358 * 299.99539 * 11 10 9 28 28 H 1.09004 * 109.47457 * 60.00221 * 11 10 9 29 29 H 1.08005 * 126.50542 * 359.97310 * 13 12 11 30 30 H 1.07997 * 120.01680 * 179.97438 * 16 15 14 31 31 H 1.07995 * 119.65717 * 179.97438 * 17 16 15 32 32 H 1.08001 * 119.82129 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5054 -4.9070 -0.0011 12 6 2.5150 -6.0260 -0.0018 13 6 2.9558 -6.6655 -1.0962 14 6 3.9225 -7.6696 -0.6450 15 6 3.9810 -7.5522 0.7551 16 6 4.8233 -8.3916 1.4773 17 6 5.5903 -9.3280 0.8198 18 6 5.5343 -9.4457 -0.5621 19 6 4.7068 -8.6247 -1.2983 20 9 4.6545 -8.7425 -2.6431 21 7 3.1140 -6.5446 1.1145 22 1 2.9514 -6.2470 2.0233 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8406 -3.5487 0.7808 27 1 0.8803 -4.9818 0.8885 28 1 0.8808 -4.9813 -0.8914 29 1 2.6561 -6.4749 -2.1162 30 1 4.8757 -8.3091 2.5528 31 1 6.2427 -9.9767 1.3852 32 1 6.1421 -10.1845 -1.0632 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309581035.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:04 Heat of formation + Delta-G solvation = -14.833387 kcal Electronic energy + Delta-G solvation = -16652.019647 eV Core-core repulsion = 13719.091677 eV Total energy + Delta-G solvation = -2932.927971 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.80157 -42.25261 -38.16764 -36.79155 -34.56754 -32.69845 -31.11669 -30.05673 -28.61383 -26.07708 -23.59124 -23.37277 -22.55182 -21.38326 -19.30752 -18.59428 -17.46173 -17.03409 -16.71845 -16.64079 -16.38157 -16.13859 -15.69130 -15.54472 -14.71518 -14.49862 -14.32072 -13.87258 -13.69854 -13.29125 -13.11417 -12.66479 -12.63762 -12.48953 -12.32464 -12.27316 -12.02650 -11.37698 -10.67765 -10.62206 -9.35758 -9.16194 -8.63611 -8.24288 -6.35594 -0.02790 0.51641 1.41066 1.44354 1.51993 1.57824 2.05309 2.39463 2.75217 3.09334 3.32954 3.48220 3.71307 3.94263 4.07051 4.16817 4.24473 4.34676 4.48031 4.61578 4.84759 4.94287 5.03752 5.16405 5.21760 5.29220 5.45025 5.57076 5.61855 5.76097 5.97081 6.10510 6.34046 6.56017 6.62063 6.83191 7.35224 8.86657 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.038671 B = 0.003899 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.882191 B = 7179.542299 C = 7272.395038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.971 3.029 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.539 4.539 8 H 0.062 0.938 9 C 0.208 3.792 10 N -0.684 5.684 11 C 0.121 3.879 12 C 0.099 3.901 13 C -0.202 4.202 14 C -0.172 4.172 15 C 0.115 3.885 16 C -0.136 4.136 17 C -0.069 4.069 18 C -0.179 4.179 19 C 0.111 3.889 20 F -0.151 7.151 21 N -0.580 5.580 22 H 0.428 0.572 23 H 0.266 0.734 24 H 0.006 0.994 25 H -0.030 1.030 26 H 0.335 0.665 27 H 0.045 0.955 28 H 0.090 0.910 29 H 0.142 0.858 30 H 0.156 0.844 31 H 0.175 0.825 32 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.673 -18.873 4.592 21.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.194 4.194 3 Si 0.796 3.204 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.577 4.577 8 H 0.080 0.920 9 C 0.080 3.920 10 N -0.315 5.315 11 C -0.009 4.009 12 C -0.010 4.010 13 C -0.227 4.227 14 C -0.178 4.178 15 C 0.006 3.994 16 C -0.156 4.156 17 C -0.088 4.088 18 C -0.198 4.198 19 C 0.091 3.909 20 F -0.130 7.130 21 N -0.184 5.184 22 H 0.268 0.732 23 H 0.075 0.925 24 H 0.024 0.976 25 H -0.012 1.012 26 H 0.152 0.848 27 H 0.063 0.937 28 H 0.108 0.892 29 H 0.160 0.840 30 H 0.174 0.826 31 H 0.192 0.808 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 9.521 -18.666 3.965 21.326 hybrid contribution -0.571 1.191 0.630 1.463 sum 8.949 -17.476 4.595 20.164 Atomic orbital electron populations 1.70064 1.07691 1.28167 1.51248 1.25899 0.95773 1.03232 0.94487 0.85408 0.78145 0.77779 0.79110 1.19584 1.20687 1.19045 1.21486 0.93762 0.91456 1.51028 0.91958 1.19255 0.90509 0.88285 0.93914 1.60565 1.20562 1.00797 1.49560 1.20519 0.92372 0.85764 1.02224 1.20152 0.98028 0.96600 0.86173 1.21488 1.02642 1.00114 0.98470 1.19361 1.03033 1.01021 0.94381 1.18299 0.95508 0.93011 0.92596 1.20505 0.97597 0.96526 1.01010 1.21065 0.97910 0.97181 0.92652 1.21208 1.01499 1.01681 0.95442 1.17464 0.99281 0.97703 0.76431 1.91429 1.95503 1.95330 1.30725 1.41739 1.36816 1.30791 1.09097 0.73213 0.92509 0.97589 1.01193 0.84788 0.93693 0.89191 0.84010 0.82624 0.80798 0.82597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.46 13.29 21.45 0.28 -55.17 16 2 C 0.00 0.27 5.46 84.65 0.46 0.73 16 3 Si 0.97 43.88 29.54 68.60 2.03 45.90 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 7 C -0.54 -30.42 9.32 25.60 0.24 -30.19 16 8 H 0.06 3.44 7.81 -2.91 -0.02 3.42 16 9 C 0.21 10.84 5.44 85.56 0.47 11.31 16 10 N -0.68 -28.76 6.48 -521.96 -3.38 -32.14 16 11 C 0.12 4.12 6.20 85.56 0.53 4.65 16 12 C 0.10 3.05 6.60 40.85 0.27 3.32 16 13 C -0.20 -6.59 10.95 23.50 0.26 -6.33 16 14 C -0.17 -5.20 6.36 -20.17 -0.13 -5.32 16 15 C 0.11 2.88 7.27 39.02 0.28 3.17 16 16 C -0.14 -2.42 10.07 22.37 0.23 -2.19 16 17 C -0.07 -1.05 10.01 22.29 0.22 -0.83 16 18 C -0.18 -3.50 10.01 22.32 0.22 -3.28 16 19 C 0.11 3.05 7.34 22.56 0.17 3.21 16 20 F -0.15 -4.50 17.28 44.97 0.78 -3.72 16 21 N -0.58 -14.52 6.07 -175.91 -1.07 -15.59 16 22 H 0.43 8.24 8.96 -92.71 -0.83 7.41 16 23 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 24 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 25 H -0.03 -1.62 8.14 -2.39 -0.02 -1.64 16 26 H 0.34 13.30 8.72 -89.70 -0.78 12.51 16 27 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.09 3.12 8.14 -2.38 -0.02 3.10 16 29 H 0.14 4.62 8.06 -2.91 -0.02 4.60 16 30 H 0.16 1.78 8.06 -2.91 -0.02 1.75 16 31 H 0.17 1.23 8.06 -2.91 -0.02 1.20 16 32 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -67.15 287.57 1.40 -65.76 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -0.46 Total: 16.74 kcal Atomic # 6 Polarization: -24.99 SS G_CDS: 3.22 Total: -21.78 kcal Atomic # 7 Polarization: -98.74 SS G_CDS: -4.16 Total: -102.90 kcal Atomic # 9 Polarization: -4.50 SS G_CDS: 0.78 Total: -3.72 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -67.15 1.40 -65.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309581035.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.924 kcal (2) G-P(sol) polarization free energy of solvation -67.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds