Wall clock time and date at job start Mon Mar 30 2020 06:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46497 * 109.47234 * 2 1 4 4 C 1.36939 * 119.99926 * 263.51194 * 3 2 1 5 5 H 1.07999 * 120.00032 * 190.68607 * 4 3 2 6 6 C 1.38809 * 120.00305 * 10.69010 * 4 3 2 7 7 N 1.31622 * 119.99934 * 14.62810 * 6 4 3 8 8 Si 1.86793 * 120.00488 * 194.62594 * 6 4 3 9 9 H 1.48506 * 109.47164 * 89.99794 * 8 6 4 10 10 H 1.48503 * 109.47625 * 210.00161 * 8 6 4 11 11 H 1.48500 * 109.47036 * 330.00376 * 8 6 4 12 12 C 1.46499 * 119.99975 * 83.51134 * 3 2 1 13 13 C 1.50696 * 109.47144 * 83.63982 * 12 3 2 14 14 C 1.37912 * 120.06792 * 261.91213 * 13 12 3 15 15 C 1.38399 * 120.21816 * 180.25757 * 14 13 12 16 16 C 1.38275 * 120.34543 * 359.78560 * 15 14 13 17 17 C 1.38237 * 120.12767 * 359.97438 * 16 15 14 18 18 F 1.35094 * 120.11469 * 179.97438 * 17 16 15 19 19 C 1.39647 * 120.06340 * 81.69967 * 13 12 3 20 20 C 1.43208 * 120.16845 * 359.97438 * 19 13 12 21 21 N 5.16896 * 125.84460 * 355.38361 * 2 1 3 22 22 H 1.09001 * 109.46875 * 302.38616 * 1 2 3 23 23 H 1.09002 * 109.47000 * 62.39012 * 1 2 3 24 24 H 1.08997 * 109.46874 * 182.38372 * 1 2 3 25 25 H 1.09005 * 109.47019 * 239.99759 * 2 1 3 26 26 H 1.09000 * 109.47170 * 120.00632 * 2 1 3 27 27 H 0.97000 * 120.00052 * 179.97438 * 7 6 4 28 28 H 1.08998 * 109.46807 * 323.63729 * 12 3 2 29 29 H 1.08997 * 109.46785 * 203.64344 * 12 3 2 30 30 H 1.08002 * 119.89030 * 0.02562 * 14 13 12 31 31 H 1.07997 * 119.82802 * 179.76010 * 15 14 13 32 32 H 1.08003 * 119.93596 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3730 1.9820 -1.1783 5 1 2.8917 2.9293 -1.1668 6 6 2.0657 1.3737 -2.3876 7 7 1.1969 0.3857 -2.4253 8 14 2.8852 1.9572 -3.9615 9 1 4.1393 1.1924 -4.1796 10 1 1.9668 1.7393 -5.1081 11 1 3.2010 3.4038 -3.8483 12 6 2.1274 2.1196 1.2606 13 6 3.4337 1.7795 1.9306 14 6 3.4702 0.8334 2.9333 15 6 4.6673 0.5225 3.5544 16 6 5.8369 1.1537 3.1727 17 6 5.8176 2.1007 2.1659 18 9 6.9603 2.7176 1.7936 19 6 4.6104 2.4187 1.5343 20 6 4.5807 3.3985 0.4903 21 7 4.5569 4.1764 -0.3372 22 1 -0.3633 0.5505 0.8678 23 1 -0.3633 0.4763 -0.9107 24 1 -0.3633 -1.0268 0.0427 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 0.9819 -0.0391 -3.2704 28 1 1.3007 1.8444 1.9155 29 1 2.0903 3.1901 1.0589 30 1 2.5610 0.3361 3.2374 31 1 4.6880 -0.2166 4.3416 32 1 6.7675 0.9057 3.6616 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362297677.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:10 Heat of formation + Delta-G solvation = 25.877525 kcal Electronic energy + Delta-G solvation = -17889.295055 eV Core-core repulsion = 14958.132442 eV Total energy + Delta-G solvation = -2931.162613 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.01690 -40.43890 -37.74563 -37.39635 -33.93102 -32.42431 -31.73280 -30.69547 -27.55974 -25.27518 -24.69143 -22.99523 -21.86227 -19.82968 -18.76590 -17.91880 -17.52932 -17.12371 -16.71095 -15.88704 -15.64873 -15.40072 -15.07737 -14.64736 -14.52708 -14.19746 -13.88187 -13.81245 -13.36756 -13.16711 -12.90525 -12.81181 -12.75042 -12.58385 -12.38420 -12.05017 -11.86151 -11.60448 -11.31447 -10.39447 -9.87857 -9.63959 -8.82090 -7.79002 -5.18554 -0.24104 0.26946 1.33356 1.36938 1.45440 1.66832 1.99441 2.45295 2.77122 2.96460 3.12909 3.28600 3.78418 3.82540 4.05015 4.32513 4.37840 4.56104 4.76219 4.81962 4.94615 5.05936 5.15582 5.15985 5.28093 5.35449 5.42148 5.55108 5.63858 5.91038 5.92602 6.23108 6.42756 6.50857 7.22999 7.91089 8.25181 9.17265 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.021095 B = 0.009259 C = 0.007126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.021842 B = 3023.361787 C = 3928.574393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.162 3.838 3 N -0.600 5.600 4 C -0.248 4.248 5 H 0.071 0.929 6 C -0.046 4.046 7 N -0.912 5.912 8 Si 0.933 3.067 9 H -0.292 1.292 10 H -0.287 1.287 11 H -0.291 1.291 12 C 0.171 3.829 13 C -0.025 4.025 14 C -0.120 4.120 15 C -0.042 4.042 16 C -0.152 4.152 17 C 0.123 3.877 18 F -0.145 7.145 19 C -0.080 4.080 20 C 0.274 3.726 21 N -0.463 5.463 22 H 0.028 0.972 23 H 0.044 0.956 24 H 0.038 0.962 25 H 0.069 0.931 26 H 0.033 0.967 27 H 0.244 0.756 28 H 0.085 0.915 29 H 0.039 0.961 30 H 0.160 0.840 31 H 0.186 0.814 32 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.554 -3.782 16.784 18.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.038 3.962 3 N -0.321 5.321 4 C -0.379 4.379 5 H 0.089 0.911 6 C -0.240 4.240 7 N -0.560 5.560 8 Si 0.765 3.235 9 H -0.219 1.219 10 H -0.213 1.213 11 H -0.218 1.218 12 C 0.045 3.955 13 C -0.030 4.030 14 C -0.139 4.139 15 C -0.060 4.060 16 C -0.170 4.170 17 C 0.101 3.899 18 F -0.124 7.124 19 C -0.086 4.086 20 C -0.040 4.040 21 N -0.139 5.139 22 H 0.047 0.953 23 H 0.063 0.937 24 H 0.057 0.943 25 H 0.087 0.913 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.103 0.897 29 H 0.057 0.943 30 H 0.178 0.822 31 H 0.203 0.797 32 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 5.477 -2.616 15.300 16.460 hybrid contribution 0.530 0.542 -1.540 1.717 sum 6.007 -2.074 13.760 15.156 Atomic orbital electron populations 1.22061 0.98741 0.98690 0.99667 1.20917 0.92720 0.83749 0.98815 1.44274 1.75186 1.11683 1.00982 1.19748 1.29115 1.04113 0.84897 0.91124 1.25154 0.99745 1.00107 0.99018 1.70220 1.34280 1.27534 1.24007 0.85760 0.78334 0.77315 0.82119 1.21915 1.21338 1.21771 1.19962 0.92521 0.95278 0.87753 1.21037 0.94662 0.93802 0.93545 1.21400 1.00850 0.96466 0.95140 1.21712 0.89753 0.96702 0.97828 1.21407 1.02470 0.96269 0.96886 1.17968 0.79430 0.95441 0.97027 1.91481 1.48301 1.81722 1.90896 1.16195 0.95356 0.99999 0.97002 1.25843 0.92530 0.92729 0.92886 1.81101 1.08459 1.13484 1.10899 0.95338 0.93669 0.94321 0.91294 0.94840 0.94531 0.89729 0.94265 0.82205 0.79724 0.80798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.63 9.75 71.98 0.70 -4.93 16 2 C 0.16 7.23 5.61 86.38 0.48 7.71 16 3 N -0.60 -28.15 2.52 -706.35 -1.78 -29.94 16 4 C -0.25 -13.68 9.12 84.03 0.77 -12.91 16 5 H 0.07 4.02 5.08 -2.91 -0.01 4.00 16 6 C -0.05 -2.59 5.14 84.86 0.44 -2.15 16 7 N -0.91 -51.53 8.17 21.65 0.18 -51.36 16 8 Si 0.93 48.27 29.58 68.60 2.03 50.30 16 9 H -0.29 -15.04 7.11 99.48 0.71 -14.33 16 10 H -0.29 -14.52 7.11 99.48 0.71 -13.82 16 11 H -0.29 -15.56 7.11 99.48 0.71 -14.85 16 12 C 0.17 6.38 5.37 85.63 0.46 6.84 16 13 C -0.02 -0.76 5.48 -19.60 -0.11 -0.87 16 14 C -0.12 -2.49 9.65 22.23 0.21 -2.28 16 15 C -0.04 -0.61 10.04 22.32 0.22 -0.39 16 16 C -0.15 -2.73 10.01 22.28 0.22 -2.50 16 17 C 0.12 3.42 7.28 22.67 0.17 3.59 16 18 F -0.15 -4.42 16.81 44.97 0.76 -3.67 16 19 C -0.08 -2.75 5.74 -21.29 -0.12 -2.87 16 20 C 0.27 11.61 11.92 88.33 1.05 12.67 16 21 N -0.46 -21.95 17.14 19.01 0.33 -21.62 16 22 H 0.03 1.07 7.97 -2.39 -0.02 1.05 16 23 H 0.04 2.28 6.45 -2.39 -0.02 2.27 16 24 H 0.04 1.46 8.14 -2.39 -0.02 1.45 16 25 H 0.07 3.62 5.60 -2.38 -0.01 3.61 16 26 H 0.03 1.26 8.12 -2.39 -0.02 1.24 16 27 H 0.24 13.66 8.31 -92.71 -0.77 12.89 16 28 H 0.08 2.65 7.83 -2.39 -0.02 2.64 16 29 H 0.04 1.60 7.26 -2.39 -0.02 1.58 16 30 H 0.16 2.56 8.05 -2.91 -0.02 2.53 16 31 H 0.19 1.00 8.06 -2.91 -0.02 0.98 16 32 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -68.39 279.58 7.15 -61.24 By element: Atomic # 1 Polarization: -8.01 SS G_CDS: 1.14 Total: -6.86 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: 4.50 Total: 1.91 kcal Atomic # 7 Polarization: -101.64 SS G_CDS: -1.28 Total: -102.91 kcal Atomic # 9 Polarization: -4.42 SS G_CDS: 0.76 Total: -3.67 kcal Atomic # 14 Polarization: 48.27 SS G_CDS: 2.03 Total: 50.30 kcal Total: -68.39 7.15 -61.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362297677.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.118 kcal (2) G-P(sol) polarization free energy of solvation -68.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds