Wall clock time and date at job start Mon Mar 30 2020 06:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 O 1.42903 * 109.46726 * 180.02562 * 10 9 7 12 12 C 1.35983 * 116.99692 * 180.02562 * 11 10 9 13 13 C 1.38723 * 120.07140 * 359.72771 * 12 11 10 14 14 C 1.37945 * 119.90094 * 179.84252 * 13 12 11 15 15 C 1.39129 * 120.29448 * 0.51922 * 14 13 12 16 16 C 1.38351 * 119.78165 * 359.61316 * 15 14 13 17 17 C 1.38502 * 119.88087 * 0.16313 * 16 15 14 18 18 C 1.50778 * 121.40955 * 180.32877 * 16 15 14 19 19 C 1.53065 * 109.69033 * 342.17292 * 18 16 15 20 20 C 1.53402 * 108.29610 * 48.22350 * 19 18 16 21 21 O 1.35949 * 118.43323 * 179.46307 * 15 14 13 22 22 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 24 24 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 25 25 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 26 26 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 27 27 H 1.08002 * 120.04924 * 0.07314 * 13 12 11 28 28 H 1.08006 * 119.85254 * 180.26286 * 14 13 12 29 29 H 1.08002 * 119.85805 * 179.97438 * 17 16 15 30 30 H 1.09001 * 109.43291 * 102.23910 * 18 16 15 31 31 H 1.08995 * 109.43186 * 222.10358 * 18 16 15 32 32 H 1.09002 * 109.69864 * 167.92528 * 19 18 16 33 33 H 1.09002 * 109.69829 * 288.51700 * 19 18 16 34 34 H 1.08994 * 109.69014 * 54.99020 * 20 19 18 35 35 H 1.09007 * 109.68433 * 175.50818 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 8 1.5308 -4.8996 0.0020 12 6 2.2715 -6.0400 0.0024 13 6 3.6569 -5.9691 -0.0034 14 6 4.4048 -7.1282 0.0003 15 6 3.7759 -8.3692 -0.0011 16 6 2.3942 -8.4395 0.0019 17 6 1.6441 -7.2751 0.0029 18 6 1.6748 -9.7645 0.0080 19 6 2.6335 -10.8739 -0.4313 20 6 3.9387 -10.7240 0.3607 21 8 4.5497 -9.4870 -0.0085 22 1 -0.4850 0.8400 -0.0004 23 1 0.6241 -2.5575 -0.8880 24 1 0.6247 -2.5564 0.8919 25 1 2.8714 -3.6047 -0.8890 26 1 2.8726 -3.6039 0.8910 27 1 4.1492 -5.0078 -0.0071 28 1 5.4834 -7.0720 0.0000 29 1 0.5655 -7.3304 0.0048 30 1 1.3122 -9.9757 1.0140 31 1 0.8302 -9.7217 -0.6796 32 1 2.1883 -11.8473 -0.2250 33 1 2.8382 -10.7816 -1.4979 34 1 3.7219 -10.7221 1.4289 35 1 4.6089 -11.5504 0.1237 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380706720.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:54 Heat of formation + Delta-G solvation = -71.711221 kcal Electronic energy + Delta-G solvation = -17197.698322 eV Core-core repulsion = 14353.471497 eV Total energy + Delta-G solvation = -2844.226825 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.64120 -38.88386 -36.21767 -34.31739 -33.33965 -30.66206 -30.39527 -28.92004 -25.67180 -25.10230 -23.32777 -22.53651 -21.05003 -19.74861 -17.68099 -17.48058 -16.55259 -16.10429 -15.46997 -15.17316 -14.76720 -14.48791 -14.44633 -13.97968 -13.32645 -13.25615 -13.00767 -12.65809 -12.35637 -12.20241 -11.81450 -11.24123 -11.22719 -10.99878 -10.87053 -10.65261 -10.51458 -10.28658 -9.67489 -9.64593 -9.27716 -8.72052 -8.44518 -7.44398 -6.10030 -4.14525 1.37778 1.67058 3.27007 3.31192 3.34189 3.37899 3.84598 3.88207 4.40619 4.53470 4.54391 4.68088 4.88012 5.05575 5.16910 5.26533 5.27253 5.39587 5.40753 5.53145 5.68147 5.83619 5.88766 5.98110 6.05577 6.13663 6.17244 6.48542 6.55033 6.69621 6.79836 7.44649 7.54589 7.65098 7.82756 8.08602 8.24770 8.91409 9.49881 11.01612 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.060500 B = 0.003726 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.698178 B = 7512.643785 C = 7923.453624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.526 4.526 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.065 3.935 11 O -0.316 6.316 12 C 0.119 3.881 13 C -0.179 4.179 14 C -0.106 4.106 15 C 0.077 3.923 16 C -0.122 4.122 17 C -0.131 4.131 18 C -0.077 4.077 19 C -0.159 4.159 20 C 0.062 3.938 21 O -0.320 6.320 22 H 0.263 0.737 23 H 0.028 0.972 24 H 0.028 0.972 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.137 0.863 28 H 0.129 0.871 29 H 0.131 0.869 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.026 -20.588 0.373 21.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.564 4.564 8 H 0.077 0.923 9 C -0.012 4.012 10 C -0.009 4.009 11 O -0.230 6.230 12 C 0.072 3.928 13 C -0.198 4.198 14 C -0.125 4.125 15 C 0.033 3.967 16 C -0.123 4.123 17 C -0.150 4.150 18 C -0.114 4.114 19 C -0.197 4.197 20 C -0.014 4.014 21 O -0.235 6.235 22 H 0.072 0.928 23 H 0.046 0.954 24 H 0.046 0.954 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.155 0.845 28 H 0.147 0.853 29 H 0.149 0.851 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.855 -20.441 0.327 21.266 hybrid contribution 0.408 0.976 0.052 1.059 sum 6.263 -19.465 0.378 20.451 Atomic orbital electron populations 1.69984 1.06109 1.26851 1.49846 1.24994 0.94903 0.99400 0.94924 0.86433 0.80005 0.83256 0.77709 1.19617 1.20838 1.20847 1.21023 0.93106 0.90220 1.52055 0.92287 1.19125 0.94190 0.89049 0.98853 1.23318 0.97089 0.80905 0.99611 1.86181 1.36278 1.13025 1.87503 1.19017 0.90028 0.87599 0.96118 1.21194 0.93066 0.99087 1.06402 1.20342 1.00076 0.89214 1.02820 1.18453 0.88937 0.86346 1.02979 1.19497 0.92160 0.95313 1.05306 1.20137 1.00130 0.88858 1.05826 1.20461 0.97839 0.90645 1.02466 1.22227 0.96451 0.99515 1.01458 1.22877 0.94989 0.84910 0.98581 1.85982 1.38174 1.14585 1.84737 0.92769 0.95406 0.95408 0.93164 0.93170 0.84513 0.85306 0.85144 0.90391 0.89889 0.89966 0.90460 0.92140 0.87937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.55 13.29 55.43 0.74 -25.82 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.53 -14.73 9.11 -34.44 -0.31 -15.04 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.66 5.34 -27.88 -0.15 0.51 16 10 C 0.06 1.40 4.68 37.16 0.17 1.58 16 11 O -0.32 -6.60 10.14 -19.69 -0.20 -6.80 16 12 C 0.12 2.13 6.68 -39.29 -0.26 1.86 16 13 C -0.18 -2.90 9.03 -39.51 -0.36 -3.26 16 14 C -0.11 -1.55 9.93 -39.36 -0.39 -1.94 16 15 C 0.08 1.10 6.47 -39.21 -0.25 0.85 16 16 C -0.12 -1.67 5.75 -104.44 -0.60 -2.27 16 17 C -0.13 -2.03 9.60 -39.38 -0.38 -2.41 16 18 C -0.08 -0.76 5.86 -27.81 -0.16 -0.93 16 19 C -0.16 -1.29 6.19 -26.49 -0.16 -1.46 16 20 C 0.06 0.55 7.03 37.37 0.26 0.81 16 21 O -0.32 -4.12 10.27 -19.58 -0.20 -4.32 16 22 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 23 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.05 1.03 7.65 -51.93 -0.40 0.64 16 26 H 0.05 1.03 7.67 -51.93 -0.40 0.63 16 27 H 0.14 2.13 6.31 -52.49 -0.33 1.80 16 28 H 0.13 1.63 8.06 -52.48 -0.42 1.21 16 29 H 0.13 1.86 8.06 -52.49 -0.42 1.44 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.10 0.66 8.14 -51.92 -0.42 0.23 16 LS Contribution 294.63 15.07 4.44 4.44 Total: -1.00 -30.99 294.63 -7.83 -38.82 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -4.90 Total: -2.53 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: -2.69 Total: -20.09 kcal Atomic # 7 Polarization: -26.55 SS G_CDS: 0.74 Total: -25.82 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: -0.40 Total: -11.12 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.99 -7.83 -38.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380706720.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.889 kcal (2) G-P(sol) polarization free energy of solvation -30.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds