Wall clock time and date at job start Mon Mar 30 2020 06:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 O 1.42903 * 109.46726 * 180.02562 * 10 9 7 12 12 C 1.35983 * 116.99692 * 180.02562 * 11 10 9 13 13 C 1.38723 * 120.07140 * 359.72771 * 12 11 10 14 14 C 1.37945 * 119.90094 * 179.84252 * 13 12 11 15 15 C 1.39129 * 120.29448 * 0.51922 * 14 13 12 16 16 C 1.38351 * 119.78165 * 359.61316 * 15 14 13 17 17 C 1.38502 * 119.88087 * 0.16313 * 16 15 14 18 18 C 1.50778 * 121.40955 * 180.32877 * 16 15 14 19 19 C 1.53065 * 109.69033 * 342.17292 * 18 16 15 20 20 C 1.53402 * 108.29610 * 48.22350 * 19 18 16 21 21 O 1.35949 * 118.43323 * 179.46307 * 15 14 13 22 22 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 24 24 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 25 25 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 26 26 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 27 27 H 1.08002 * 120.04924 * 0.07314 * 13 12 11 28 28 H 1.08006 * 119.85254 * 180.26286 * 14 13 12 29 29 H 1.08002 * 119.85805 * 179.97438 * 17 16 15 30 30 H 1.09001 * 109.43291 * 102.23910 * 18 16 15 31 31 H 1.08995 * 109.43186 * 222.10358 * 18 16 15 32 32 H 1.09002 * 109.69864 * 167.92528 * 19 18 16 33 33 H 1.09002 * 109.69829 * 288.51700 * 19 18 16 34 34 H 1.08994 * 109.69014 * 54.99020 * 20 19 18 35 35 H 1.09007 * 109.68433 * 175.50818 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 8 1.5308 -4.8996 0.0020 12 6 2.2715 -6.0400 0.0024 13 6 3.6569 -5.9691 -0.0034 14 6 4.4048 -7.1282 0.0003 15 6 3.7759 -8.3692 -0.0011 16 6 2.3942 -8.4395 0.0019 17 6 1.6441 -7.2751 0.0029 18 6 1.6748 -9.7645 0.0080 19 6 2.6335 -10.8739 -0.4313 20 6 3.9387 -10.7240 0.3607 21 8 4.5497 -9.4870 -0.0085 22 1 -0.4850 0.8400 -0.0004 23 1 0.6241 -2.5575 -0.8880 24 1 0.6247 -2.5564 0.8919 25 1 2.8714 -3.6047 -0.8890 26 1 2.8726 -3.6039 0.8910 27 1 4.1492 -5.0078 -0.0071 28 1 5.4834 -7.0720 0.0000 29 1 0.5655 -7.3304 0.0048 30 1 1.3122 -9.9757 1.0140 31 1 0.8302 -9.7217 -0.6796 32 1 2.1883 -11.8473 -0.2250 33 1 2.8382 -10.7816 -1.4979 34 1 3.7219 -10.7221 1.4289 35 1 4.6089 -11.5504 0.1237 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380706720.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:54 Heat of formation + Delta-G solvation = -89.837079 kcal Electronic energy + Delta-G solvation = -17198.484318 eV Core-core repulsion = 14353.471497 eV Total energy + Delta-G solvation = -2845.012821 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.71099 -40.20594 -37.47162 -35.43810 -35.17304 -32.45982 -31.47264 -30.26680 -27.01313 -26.55045 -24.51701 -23.74365 -22.75205 -20.84004 -19.07095 -18.67049 -18.06180 -17.58879 -16.94532 -16.53732 -16.27621 -15.82045 -15.40415 -14.97859 -14.52646 -14.43639 -14.28758 -14.04200 -13.81175 -13.74732 -13.28618 -12.85582 -12.65584 -12.40423 -12.18841 -11.90988 -11.80606 -11.61909 -11.43214 -11.32776 -11.11064 -10.62270 -9.85071 -8.67984 -8.26784 -6.40352 0.22212 0.45576 1.41334 1.42204 1.55809 2.25793 2.40156 2.53834 2.71000 3.07765 3.68129 3.77419 3.84307 3.95257 4.07117 4.18623 4.27976 4.32286 4.42761 4.52883 4.64504 4.71240 4.73189 4.89908 4.93610 4.97232 5.06518 5.19806 5.32469 5.39396 5.40625 5.47426 5.59896 5.72437 6.06951 6.43268 6.61967 6.74735 7.29862 8.86605 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.060500 B = 0.003726 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.698178 B = 7512.643785 C = 7923.453624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.976 3.024 4 H -0.258 1.258 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.546 4.546 8 H 0.071 0.929 9 C 0.028 3.972 10 C 0.083 3.917 11 O -0.340 6.340 12 C 0.081 3.919 13 C -0.185 4.185 14 C -0.112 4.112 15 C 0.079 3.921 16 C -0.121 4.121 17 C -0.136 4.136 18 C -0.081 4.081 19 C -0.153 4.153 20 C 0.050 3.950 21 O -0.331 6.331 22 H 0.267 0.733 23 H -0.002 1.002 24 H -0.001 1.001 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.138 0.862 28 H 0.148 0.852 29 H 0.137 0.863 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.115 0.885 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.599 -22.220 0.473 23.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.800 3.200 4 H -0.181 1.181 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.089 0.911 9 C -0.009 4.009 10 C 0.009 3.991 11 O -0.254 6.254 12 C 0.036 3.964 13 C -0.204 4.204 14 C -0.131 4.131 15 C 0.035 3.965 16 C -0.122 4.122 17 C -0.155 4.155 18 C -0.117 4.117 19 C -0.190 4.190 20 C -0.024 4.024 21 O -0.246 6.246 22 H 0.076 0.924 23 H 0.017 0.983 24 H 0.017 0.983 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.156 0.844 28 H 0.165 0.835 29 H 0.155 0.845 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.133 0.867 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 7.441 -22.113 0.428 23.335 hybrid contribution -0.084 1.263 0.029 1.266 sum 7.357 -20.850 0.457 22.115 Atomic orbital electron populations 1.70123 1.08046 1.28170 1.50703 1.26042 0.95827 1.03688 0.94152 0.85230 0.79046 0.77856 0.77878 1.18143 1.20220 1.20220 1.21442 0.93856 0.91041 1.52027 0.91113 1.18964 0.94547 0.91358 0.96020 1.22867 0.95461 0.80303 1.00485 1.86093 1.37096 1.13529 1.88723 1.19325 0.90872 0.87076 0.99096 1.21238 0.92499 0.99897 1.06719 1.20569 1.01013 0.89051 1.02464 1.18630 0.89356 0.86980 1.01560 1.19900 0.92219 0.96408 1.03654 1.20362 1.00760 0.88751 1.05608 1.20618 0.98245 0.89111 1.03757 1.22235 0.95675 1.00315 1.00817 1.23284 0.96068 0.83763 0.99301 1.85977 1.38738 1.15327 1.84556 0.92433 0.98308 0.98280 0.92232 0.92192 0.84428 0.83457 0.84542 0.88882 0.88968 0.86701 0.91100 0.91298 0.85108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.97 13.29 21.45 0.28 -56.69 16 2 C 0.00 0.08 5.46 84.66 0.46 0.54 16 3 Si 0.98 43.76 29.54 68.60 2.03 45.79 16 4 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 5 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.55 -31.11 9.11 25.60 0.23 -30.88 16 8 H 0.07 3.77 7.74 -2.91 -0.02 3.75 16 9 C 0.03 1.57 5.34 29.85 0.16 1.73 16 10 C 0.08 3.72 4.68 71.98 0.34 4.06 16 11 O -0.34 -14.77 10.14 -93.35 -0.95 -15.72 16 12 C 0.08 2.97 6.68 22.46 0.15 3.12 16 13 C -0.18 -6.01 9.03 22.32 0.20 -5.81 16 14 C -0.11 -3.19 9.93 22.41 0.22 -2.97 16 15 C 0.08 2.15 6.47 22.51 0.15 2.30 16 16 C -0.12 -3.13 5.75 -19.75 -0.11 -3.25 16 17 C -0.14 -4.23 9.60 22.40 0.22 -4.01 16 18 C -0.08 -1.38 5.86 29.89 0.18 -1.20 16 19 C -0.15 -1.94 6.19 30.75 0.19 -1.75 16 20 C 0.05 0.71 7.03 72.12 0.51 1.22 16 21 O -0.33 -7.70 10.27 -92.97 -0.96 -8.65 16 22 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 23 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 24 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 25 H 0.06 2.51 7.65 -2.39 -0.02 2.49 16 26 H 0.06 2.52 7.67 -2.39 -0.02 2.50 16 27 H 0.14 4.32 6.31 -2.91 -0.02 4.30 16 28 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 29 H 0.14 3.93 8.06 -2.91 -0.02 3.91 16 30 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.13 1.14 8.14 -2.38 -0.02 1.12 16 Total: -1.00 -68.33 294.63 4.37 -63.96 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: 1.07 Total: 8.22 kcal Atomic # 6 Polarization: -39.80 SS G_CDS: 2.89 Total: -36.91 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: 0.28 Total: -56.69 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -1.90 Total: -24.37 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -68.33 4.37 -63.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380706720.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.874 kcal (2) G-P(sol) polarization free energy of solvation -68.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds