Wall clock time and date at job start Mon Mar 30 2020 06:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.47373 * 2 1 4 4 C 1.50696 * 109.47298 * 120.00483 * 2 1 3 5 5 H 1.08000 * 120.00132 * 119.99753 * 4 2 1 6 6 C 1.37880 * 119.99619 * 299.99894 * 4 2 1 7 7 N 1.31504 * 120.00327 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99902 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.46948 * 59.99677 * 8 6 4 10 10 H 1.48496 * 109.47544 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46921 * 300.00290 * 8 6 4 12 12 N 1.46500 * 109.47175 * 240.00271 * 2 1 3 13 13 C 1.39905 * 120.00116 * 84.99520 * 12 2 1 14 14 C 1.39264 * 119.88101 * 0.22002 * 13 12 2 15 15 C 1.37921 * 120.38870 * 180.24772 * 14 13 12 16 16 C 1.38580 * 119.98821 * 359.50007 * 15 14 13 17 17 O 1.35382 * 133.71298 * 180.27801 * 16 15 14 18 18 C 1.34360 * 108.18356 * 180.02562 * 17 16 15 19 19 O 1.35188 * 124.93017 * 180.02562 * 18 17 16 20 20 N 1.30630 * 110.14417 * 359.97438 * 18 17 16 21 21 C 1.36167 * 108.72709 * 0.02562 * 20 18 17 22 22 C 1.38366 * 119.88302 * 179.97438 * 13 12 2 23 23 H 1.08999 * 109.47414 * 299.99857 * 1 2 3 24 24 H 1.09006 * 109.47370 * 59.99603 * 1 2 3 25 25 H 1.09003 * 109.47263 * 179.97438 * 1 2 3 26 26 H 0.97000 * 120.00260 * 179.97438 * 7 6 4 27 27 H 0.96996 * 120.00353 * 265.00512 * 12 2 1 28 28 H 1.08003 * 119.80342 * 0.04784 * 14 13 12 29 29 H 1.08002 * 120.00760 * 179.78437 * 15 14 13 30 30 H 0.96698 * 113.99838 * 269.98051 * 19 18 17 31 31 H 1.07997 * 120.16664 * 0.02860 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6992 -0.2394 2.4827 7 7 0.9436 0.8300 2.6034 8 14 2.3225 -1.1197 4.0079 9 1 3.8076 -1.1191 4.0076 10 1 1.8280 -0.4195 5.2204 11 1 1.8281 -2.5199 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 2.1518 0.0074 -2.4013 14 6 1.8242 1.3597 -2.4599 15 6 1.9470 2.0566 -3.6437 16 6 2.4085 1.4138 -4.7813 17 8 2.6371 1.8139 -6.0543 18 6 3.0895 0.7578 -6.7509 19 8 3.4250 0.7803 -8.0603 20 7 3.1592 -0.2938 -5.9790 21 6 2.7447 0.0530 -4.7292 22 6 2.6138 -0.6471 -3.5295 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 0.7089 1.1612 3.4844 27 1 2.2489 -1.6317 -1.1528 28 1 1.4687 1.8648 -1.5739 29 1 1.6878 3.1044 -3.6830 30 1 2.6931 0.5738 -8.6575 31 1 2.8709 -1.6949 -3.4819 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381744009.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:42 Heat of formation + Delta-G solvation = 3.835158 kcal Electronic energy + Delta-G solvation = -17188.361406 eV Core-core repulsion = 14243.870174 eV Total energy + Delta-G solvation = -2944.491231 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.86517 -38.60699 -37.71230 -35.35937 -34.17654 -32.64043 -30.31557 -28.82580 -27.22908 -25.32660 -23.31239 -22.49061 -21.68289 -20.49229 -19.15446 -17.77218 -17.17456 -16.99041 -16.35179 -15.24258 -14.99813 -14.51176 -14.13450 -13.90627 -13.26629 -12.83272 -12.76695 -12.49420 -12.25415 -11.82078 -11.34402 -11.14288 -11.06912 -10.96536 -10.73885 -10.38155 -10.26652 -10.19646 -9.42190 -9.12380 -8.57361 -8.15873 -6.72462 -6.23370 -4.31682 0.87622 1.83410 2.11343 2.61013 3.21025 3.26263 3.28179 3.62300 4.10402 4.19364 4.43464 4.86343 5.09752 5.22726 5.38550 5.60175 5.61614 5.83052 6.27928 6.43633 6.55251 6.62636 6.65738 6.76746 6.85150 6.95845 7.06561 7.29994 7.58128 7.73166 7.78021 7.96767 8.21028 8.55794 8.79528 9.35915 10.82567 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.058566 B = 0.004426 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.976948 B = 6324.953311 C = 6567.844194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.265 3.735 3 H 0.042 0.958 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.068 3.932 7 N -0.886 5.886 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.717 5.717 13 C 0.244 3.756 14 C -0.152 4.152 15 C -0.047 4.047 16 C -0.056 4.056 17 O -0.231 6.231 18 C 0.402 3.598 19 O -0.414 6.414 20 N -0.473 5.473 21 C 0.079 3.921 22 C -0.180 4.180 23 H 0.091 0.909 24 H 0.014 0.986 25 H 0.030 0.970 26 H 0.266 0.734 27 H 0.394 0.606 28 H 0.148 0.852 29 H 0.131 0.869 30 H 0.414 0.586 31 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.046 1.144 -13.118 13.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.163 3.837 3 H 0.060 0.940 4 C -0.571 4.571 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.339 5.339 13 C 0.132 3.868 14 C -0.174 4.174 15 C -0.066 4.066 16 C -0.106 4.106 17 O -0.125 6.125 18 C 0.153 3.847 19 O -0.221 6.221 20 N -0.218 5.218 21 C -0.033 4.033 22 C -0.207 4.207 23 H 0.109 0.891 24 H 0.033 0.967 25 H 0.049 0.951 26 H 0.076 0.924 27 H 0.228 0.772 28 H 0.166 0.834 29 H 0.149 0.851 30 H 0.274 0.726 31 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.620 1.007 -12.792 12.847 hybrid contribution -0.225 -0.212 0.552 0.632 sum 0.395 0.795 -12.241 12.273 Atomic orbital electron populations 1.22212 0.98586 0.99796 1.00696 1.18803 0.90816 0.93499 0.80608 0.94022 1.21147 1.32413 1.13393 0.90154 0.92035 1.24858 0.94683 0.94942 0.99073 1.69846 1.35887 1.22475 1.24179 0.86489 0.79256 0.79653 0.81648 1.20112 1.21087 1.20127 1.45681 1.68831 1.12305 1.07087 1.17727 0.91116 0.91224 0.86703 1.20852 1.05613 0.93301 0.97619 1.19572 0.99522 0.99746 0.87804 1.19722 1.11959 0.95198 0.83719 1.84378 1.68595 1.38732 1.20780 1.22371 0.94881 0.80709 0.86753 1.84882 1.37456 1.91309 1.08493 1.70963 1.22704 1.25748 1.02434 1.19078 1.00704 0.91854 0.91662 1.19349 1.12120 1.00274 0.88919 0.89050 0.96711 0.95057 0.92430 0.77240 0.83449 0.85096 0.72648 0.85372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 9.21 37.15 0.34 -3.08 16 2 C 0.26 6.03 2.25 -69.09 -0.16 5.88 16 3 H 0.04 1.02 6.46 -51.93 -0.34 0.68 16 4 C -0.53 -13.41 8.73 -34.44 -0.30 -13.71 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -23.36 11.32 55.43 0.63 -22.73 16 8 Si 0.90 20.00 29.54 -169.99 -5.02 14.98 16 9 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 10 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 12 N -0.72 -14.02 5.25 -53.28 -0.28 -14.30 16 13 C 0.24 4.45 6.63 -83.74 -0.56 3.89 16 14 C -0.15 -2.62 8.84 -39.32 -0.35 -2.97 16 15 C -0.05 -0.73 10.05 -39.57 -0.40 -1.13 16 16 C -0.06 -0.95 7.42 -38.69 -0.29 -1.24 16 17 O -0.23 -3.66 10.79 -20.81 -0.22 -3.89 16 18 C 0.40 5.91 9.54 52.25 0.50 6.41 16 19 O -0.41 -4.28 13.62 -40.55 -0.55 -4.84 16 20 N -0.47 -8.07 11.38 -12.80 -0.15 -8.22 16 21 C 0.08 1.41 7.23 -84.70 -0.61 0.80 16 22 C -0.18 -3.15 9.94 -39.06 -0.39 -3.54 16 23 H 0.09 2.23 6.07 -51.93 -0.32 1.92 16 24 H 0.01 0.29 7.72 -51.93 -0.40 -0.12 16 25 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 27 H 0.39 7.23 8.55 -40.82 -0.35 6.88 16 28 H 0.15 2.58 6.09 -52.48 -0.32 2.26 16 29 H 0.13 1.68 8.06 -52.49 -0.42 1.25 16 30 H 0.41 1.65 9.06 45.56 0.41 2.06 16 31 H 0.13 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 272.60 15.07 4.11 4.11 Total: -1.00 -28.97 272.60 -5.90 -34.88 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -2.12 Total: 7.06 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -2.30 Total: -7.06 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: 0.20 Total: -45.24 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: -0.78 Total: -8.72 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -28.97 -5.90 -34.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381744009.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.712 kcal (2) G-P(sol) polarization free energy of solvation -28.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds