Wall clock time and date at job start Mon Mar 30 2020 06:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86801 * 119.99940 * 2 1 4 4 H 1.48501 * 109.47059 * 240.00057 * 3 2 1 5 5 H 1.48498 * 109.47129 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47234 * 119.99828 * 3 2 1 7 7 C 1.39886 * 120.00149 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00422 * 197.97493 * 7 2 1 9 9 C 1.41215 * 120.00057 * 17.97913 * 7 2 1 10 10 C 1.40837 * 120.17912 * 24.60723 * 9 7 2 11 11 C 1.36432 * 119.81450 * 179.97438 * 10 9 7 12 12 C 1.39313 * 120.18270 * 359.97438 * 11 10 9 13 13 O 1.35674 * 119.81707 * 180.02562 * 12 11 10 14 14 C 1.42903 * 116.99925 * 359.97438 * 13 12 11 15 15 C 1.53002 * 109.47268 * 180.02562 * 14 13 12 16 16 C 1.52999 * 109.47500 * 180.02562 * 15 14 13 17 17 C 1.52998 * 109.47174 * 179.97438 * 16 15 14 18 18 H 1.09001 * 115.71588 * 29.41656 * 17 16 15 19 19 C 1.53006 * 117.77115 * 176.36102 * 17 16 15 20 20 O 1.42900 * 117.77187 * 242.46897 * 17 16 15 21 21 C 1.39311 * 120.36643 * 0.02562 * 12 11 10 22 22 C 1.36435 * 120.18267 * 359.97438 * 21 12 11 23 23 H 0.96995 * 119.99786 * 359.97438 * 1 2 3 24 24 H 1.08004 * 120.09175 * 359.69622 * 10 9 7 25 25 H 1.08000 * 119.91188 * 179.97438 * 11 10 9 26 26 H 1.08991 * 109.47758 * 299.99996 * 14 13 12 27 27 H 1.08997 * 109.46808 * 60.00708 * 14 13 12 28 28 H 1.09004 * 109.46913 * 300.00444 * 15 14 13 29 29 H 1.09004 * 109.46897 * 59.99818 * 15 14 13 30 30 H 1.09000 * 109.46664 * 300.00100 * 16 15 14 31 31 H 1.09003 * 109.46943 * 59.99820 * 16 15 14 32 32 H 1.08996 * 117.76947 * 213.68231 * 19 17 16 33 33 H 1.08997 * 117.77256 * 359.94473 * 19 17 16 34 34 H 1.08002 * 119.90845 * 180.02562 * 21 12 11 35 35 H 1.08007 * 120.09055 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.0965 1.6964 -1.2125 5 1 1.2778 2.7464 0.0006 6 1 3.0966 1.6965 1.2126 7 6 2.0083 -1.2114 0.0005 8 1 3.0487 -1.2342 0.2892 9 6 1.3540 -2.4047 -0.3764 10 6 0.2262 -2.3581 -1.2187 11 6 -0.3999 -3.5156 -1.5787 12 6 0.0737 -4.7413 -1.1158 13 8 -0.5543 -5.8878 -1.4789 14 6 -1.6917 -5.7615 -2.3348 15 6 -2.2625 -7.1494 -2.6327 16 6 -3.4798 -7.0143 -3.5496 17 6 -4.0501 -8.4023 -3.8480 18 1 -3.9042 -9.1510 -3.0694 19 6 -5.3291 -8.4829 -4.6840 20 8 -4.0474 -8.8453 -5.2066 21 6 1.1886 -4.7962 -0.2823 22 6 1.8262 -3.6479 0.0870 23 1 -0.4849 0.8400 0.0004 24 1 -0.1446 -1.4084 -1.5751 25 1 -1.2651 -3.4816 -2.2242 26 1 -2.4515 -5.1547 -1.8424 27 1 -1.3930 -5.2833 -3.2676 28 1 -1.5028 -7.7567 -3.1250 29 1 -2.5611 -7.6274 -1.6997 30 1 -4.2395 -6.4070 -3.0577 31 1 -3.1806 -6.5365 -4.4826 32 1 -6.0318 -9.2857 -4.4609 33 1 -5.7724 -7.5476 -5.0255 34 1 1.5497 -5.7505 0.0718 35 1 2.6902 -3.6922 0.7336 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390262739.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:43 Heat of formation + Delta-G solvation = -41.979625 kcal Electronic energy + Delta-G solvation = -16790.446502 eV Core-core repulsion = 13947.508936 eV Total energy + Delta-G solvation = -2842.937566 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.49380 -38.78750 -36.53049 -34.14446 -33.17695 -29.64639 -29.30195 -27.93579 -25.72522 -24.62945 -22.53450 -21.48263 -20.81678 -20.17139 -17.35151 -17.03470 -16.62665 -15.84415 -15.79991 -15.26103 -14.85914 -14.33870 -13.93539 -13.65696 -13.01950 -12.64612 -12.40786 -12.23794 -11.91953 -11.88157 -11.57230 -11.19766 -11.11053 -10.97710 -10.85564 -10.56014 -10.52205 -10.32798 -9.85475 -9.78804 -9.35407 -8.99741 -7.64316 -7.00238 -6.72174 -4.24409 2.78956 2.97695 3.07752 3.10633 3.20808 3.23329 3.84794 3.95443 4.09607 4.51233 4.62354 4.72688 4.76913 5.06195 5.21684 5.27151 5.47853 5.51822 5.65553 5.67911 5.69831 5.82977 6.13747 6.17371 6.17571 6.30065 6.74997 6.90634 7.07643 7.29194 7.42689 7.57027 7.92359 8.01020 8.16595 8.46194 8.66379 8.90918 9.00527 10.22603 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.045292 B = 0.003535 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.056639 B = 7918.407470 C = 8389.513396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.075 3.925 3 Si 0.907 3.093 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.464 4.464 8 H 0.077 0.923 9 C 0.087 3.913 10 C -0.135 4.135 11 C -0.174 4.174 12 C -0.009 4.009 13 O -0.331 6.331 14 C 0.068 3.932 15 C -0.115 4.115 16 C -0.106 4.106 17 C -0.004 4.004 18 H 0.126 0.874 19 C -0.042 4.042 20 O -0.359 6.359 21 C -0.114 4.114 22 C -0.197 4.197 23 H 0.280 0.720 24 H 0.121 0.879 25 H 0.094 0.906 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.096 0.904 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.698 -8.824 -4.900 13.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.494 4.494 8 H 0.095 0.905 9 C 0.085 3.915 10 C -0.154 4.154 11 C -0.193 4.193 12 C -0.052 4.052 13 O -0.247 6.247 14 C -0.008 4.008 15 C -0.153 4.153 16 C -0.144 4.144 17 C -0.061 4.061 18 H 0.144 0.856 19 C -0.118 4.118 20 O -0.280 6.280 21 C -0.132 4.132 22 C -0.216 4.216 23 H 0.090 0.910 24 H 0.139 0.861 25 H 0.112 0.888 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.115 0.885 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.655 -8.964 -5.113 13.469 hybrid contribution 0.181 0.958 -0.185 0.992 sum -8.474 -8.007 -5.298 12.806 Atomic orbital electron populations 1.69831 1.07520 1.29137 1.36193 1.25872 0.94712 1.01202 0.92371 0.86385 0.80128 0.80355 0.79926 1.18907 1.20436 1.19062 1.19436 0.98127 0.91248 1.40597 0.90529 1.17590 0.91864 0.92161 0.89879 1.20953 0.98534 0.96496 0.99447 1.20618 1.01437 0.92918 1.04278 1.18573 0.97674 0.83867 1.05087 1.85775 1.42615 1.30987 1.65316 1.22398 0.88073 0.96594 0.93724 1.21465 0.96755 0.97184 0.99847 1.21430 0.98031 0.93952 1.00983 1.23812 0.98929 0.98419 0.84937 0.85605 1.24395 0.84102 1.02722 1.00594 1.91716 1.24325 1.86201 1.25720 1.19614 0.95650 0.97654 1.00332 1.20596 1.03224 0.92249 1.05577 0.90960 0.86108 0.88762 0.93035 0.93199 0.90948 0.90768 0.89654 0.90450 0.87290 0.87205 0.88547 0.88221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.76 10.96 55.54 0.61 -20.16 16 2 C 0.08 1.89 5.13 -17.34 -0.09 1.80 16 3 Si 0.91 18.74 29.60 -169.99 -5.03 13.71 16 4 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 7 C -0.46 -12.38 9.04 -37.84 -0.34 -12.72 16 8 H 0.08 1.96 7.91 -52.49 -0.41 1.54 16 9 C 0.09 2.35 5.57 -106.80 -0.60 1.76 16 10 C -0.13 -3.53 8.65 -39.25 -0.34 -3.87 16 11 C -0.17 -4.13 8.96 -39.83 -0.36 -4.48 16 12 C -0.01 -0.21 6.71 -38.78 -0.26 -0.47 16 13 O -0.33 -6.82 10.12 -18.72 -0.19 -7.01 16 14 C 0.07 1.09 4.73 37.16 0.18 1.27 16 15 C -0.11 -1.40 5.55 -26.73 -0.15 -1.55 16 16 C -0.11 -1.04 5.63 -26.73 -0.15 -1.19 16 17 C 0.00 -0.04 6.60 -26.73 -0.18 -0.21 16 18 H 0.13 0.98 8.08 -51.93 -0.42 0.56 16 19 C -0.04 -0.33 11.42 37.16 0.42 0.09 16 20 O -0.36 -4.45 14.48 -35.23 -0.51 -4.96 16 21 C -0.11 -2.68 9.92 -39.83 -0.40 -3.08 16 22 C -0.20 -4.90 9.74 -39.25 -0.38 -5.29 16 23 H 0.28 6.61 8.30 -40.82 -0.34 6.28 16 24 H 0.12 3.24 6.15 -52.48 -0.32 2.91 16 25 H 0.09 1.99 6.27 -52.49 -0.33 1.66 16 26 H 0.05 0.80 7.65 -51.93 -0.40 0.41 16 27 H 0.05 0.79 7.65 -51.93 -0.40 0.40 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.81 8.13 -51.93 -0.42 0.39 16 32 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.10 2.05 8.06 -52.49 -0.42 1.62 16 35 H 0.10 2.30 8.06 -52.48 -0.42 1.88 16 LS Contribution 301.10 15.07 4.54 4.54 Total: -1.00 -29.75 301.10 -8.02 -37.77 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -4.80 Total: 4.07 kcal Atomic # 6 Polarization: -25.31 SS G_CDS: -2.64 Total: -27.95 kcal Atomic # 7 Polarization: -20.76 SS G_CDS: 0.61 Total: -20.16 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: -0.70 Total: -11.97 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.75 -8.02 -37.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390262739.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.210 kcal (2) G-P(sol) polarization free energy of solvation -29.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds