Wall clock time and date at job start Mon Mar 30 2020 06:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86801 * 119.99940 * 2 1 4 4 H 1.48501 * 109.47059 * 240.00057 * 3 2 1 5 5 H 1.48498 * 109.47129 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47234 * 119.99828 * 3 2 1 7 7 C 1.39886 * 120.00149 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00422 * 197.97493 * 7 2 1 9 9 C 1.41215 * 120.00057 * 17.97913 * 7 2 1 10 10 C 1.40837 * 120.17912 * 24.60723 * 9 7 2 11 11 C 1.36432 * 119.81450 * 179.97438 * 10 9 7 12 12 C 1.39313 * 120.18270 * 359.97438 * 11 10 9 13 13 O 1.35674 * 119.81707 * 180.02562 * 12 11 10 14 14 C 1.42903 * 116.99925 * 359.97438 * 13 12 11 15 15 C 1.53002 * 109.47268 * 180.02562 * 14 13 12 16 16 C 1.52999 * 109.47500 * 180.02562 * 15 14 13 17 17 C 1.52998 * 109.47174 * 179.97438 * 16 15 14 18 18 H 1.09001 * 115.71588 * 29.41656 * 17 16 15 19 19 C 1.53006 * 117.77115 * 176.36102 * 17 16 15 20 20 O 1.42900 * 117.77187 * 242.46897 * 17 16 15 21 21 C 1.39311 * 120.36643 * 0.02562 * 12 11 10 22 22 C 1.36435 * 120.18267 * 359.97438 * 21 12 11 23 23 H 0.96995 * 119.99786 * 359.97438 * 1 2 3 24 24 H 1.08004 * 120.09175 * 359.69622 * 10 9 7 25 25 H 1.08000 * 119.91188 * 179.97438 * 11 10 9 26 26 H 1.08991 * 109.47758 * 299.99996 * 14 13 12 27 27 H 1.08997 * 109.46808 * 60.00708 * 14 13 12 28 28 H 1.09004 * 109.46913 * 300.00444 * 15 14 13 29 29 H 1.09004 * 109.46897 * 59.99818 * 15 14 13 30 30 H 1.09000 * 109.46664 * 300.00100 * 16 15 14 31 31 H 1.09003 * 109.46943 * 59.99820 * 16 15 14 32 32 H 1.08996 * 117.76947 * 213.68231 * 19 17 16 33 33 H 1.08997 * 117.77256 * 359.94473 * 19 17 16 34 34 H 1.08002 * 119.90845 * 180.02562 * 21 12 11 35 35 H 1.08007 * 120.09055 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.0965 1.6964 -1.2125 5 1 1.2778 2.7464 0.0006 6 1 3.0966 1.6965 1.2126 7 6 2.0083 -1.2114 0.0005 8 1 3.0487 -1.2342 0.2892 9 6 1.3540 -2.4047 -0.3764 10 6 0.2262 -2.3581 -1.2187 11 6 -0.3999 -3.5156 -1.5787 12 6 0.0737 -4.7413 -1.1158 13 8 -0.5543 -5.8878 -1.4789 14 6 -1.6917 -5.7615 -2.3348 15 6 -2.2625 -7.1494 -2.6327 16 6 -3.4798 -7.0143 -3.5496 17 6 -4.0501 -8.4023 -3.8480 18 1 -3.9042 -9.1510 -3.0694 19 6 -5.3291 -8.4829 -4.6840 20 8 -4.0474 -8.8453 -5.2066 21 6 1.1886 -4.7962 -0.2823 22 6 1.8262 -3.6479 0.0870 23 1 -0.4849 0.8400 0.0004 24 1 -0.1446 -1.4084 -1.5751 25 1 -1.2651 -3.4816 -2.2242 26 1 -2.4515 -5.1547 -1.8424 27 1 -1.3930 -5.2833 -3.2676 28 1 -1.5028 -7.7567 -3.1250 29 1 -2.5611 -7.6274 -1.6997 30 1 -4.2395 -6.4070 -3.0577 31 1 -3.1806 -6.5365 -4.4826 32 1 -6.0318 -9.2857 -4.4609 33 1 -5.7724 -7.5476 -5.0255 34 1 1.5497 -5.7505 0.0718 35 1 2.6902 -3.6922 0.7336 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390262739.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:42 Heat of formation + Delta-G solvation = -59.403215 kcal Electronic energy + Delta-G solvation = -16791.202046 eV Core-core repulsion = 13947.508936 eV Total energy + Delta-G solvation = -2843.693109 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.23628 -40.49998 -38.27355 -35.51268 -34.76233 -31.54433 -31.09521 -29.07567 -26.86060 -26.18467 -23.79552 -22.84696 -22.09471 -21.80086 -19.26660 -18.62956 -17.48720 -17.18984 -16.95761 -16.57416 -16.04604 -15.76654 -15.62421 -14.85506 -14.71554 -14.23831 -14.00836 -13.67835 -13.46880 -13.00463 -12.93800 -12.76913 -12.67550 -12.34212 -12.20113 -12.01527 -11.66356 -11.44154 -11.36250 -11.20212 -11.04437 -10.85250 -9.56882 -8.91098 -8.59962 -6.22498 0.94254 1.04643 1.39938 1.50527 1.55035 2.23075 2.43163 2.71870 2.73130 3.26451 3.70276 3.79444 3.92359 4.02581 4.09818 4.27280 4.31896 4.44787 4.46336 4.53971 4.63632 4.75378 4.83624 4.87747 4.97499 5.04091 5.15276 5.20674 5.28881 5.37213 5.53472 5.66862 5.97967 6.06428 6.23875 6.56473 6.79864 6.95220 7.10559 8.36826 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.045292 B = 0.003535 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.056639 B = 7918.407470 C = 8389.513396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.034 3.966 3 Si 0.982 3.018 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.260 1.260 7 C -0.501 4.501 8 H 0.076 0.924 9 C 0.054 3.946 10 C -0.157 4.157 11 C -0.176 4.176 12 C -0.003 4.003 13 O -0.337 6.337 14 C 0.059 3.941 15 C -0.105 4.105 16 C -0.100 4.100 17 C -0.010 4.010 18 H 0.141 0.859 19 C -0.030 4.030 20 O -0.406 6.406 21 C -0.122 4.122 22 C -0.206 4.206 23 H 0.287 0.713 24 H 0.107 0.893 25 H 0.118 0.882 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.067 0.933 32 H 0.133 0.867 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.661 -9.188 -5.032 14.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.186 1.186 5 H -0.192 1.192 6 H -0.184 1.184 7 C -0.530 4.530 8 H 0.094 0.906 9 C 0.052 3.948 10 C -0.176 4.176 11 C -0.195 4.195 12 C -0.047 4.047 13 O -0.254 6.254 14 C -0.017 4.017 15 C -0.143 4.143 16 C -0.137 4.137 17 C -0.067 4.067 18 H 0.159 0.841 19 C -0.105 4.105 20 O -0.327 6.327 21 C -0.140 4.140 22 C -0.226 4.226 23 H 0.098 0.902 24 H 0.125 0.875 25 H 0.136 0.864 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.104 0.896 30 H 0.122 0.878 31 H 0.086 0.914 32 H 0.151 0.849 33 H 0.142 0.858 34 H 0.138 0.862 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.634 -9.352 -5.248 14.416 hybrid contribution 0.380 0.931 -0.177 1.021 sum -9.255 -8.421 -5.424 13.637 Atomic orbital electron populations 1.69881 1.08928 1.30486 1.36457 1.26725 0.95505 1.04429 0.91326 0.85257 0.78758 0.75717 0.79986 1.18641 1.19247 1.18397 1.19701 0.98435 0.92440 1.42473 0.90567 1.17958 0.92770 0.93225 0.90810 1.20931 0.99357 0.96805 1.00531 1.20829 1.01915 0.92454 1.04300 1.18718 0.97394 0.84564 1.04019 1.85779 1.43946 1.29656 1.65985 1.22761 0.86738 0.99326 0.92857 1.21427 0.97336 0.94618 1.00877 1.21379 0.97438 0.94839 1.00064 1.23932 1.00226 0.98250 0.84278 0.84150 1.24833 0.83319 1.04084 0.98294 1.91686 1.27042 1.86601 1.27357 1.19913 0.95673 0.98265 1.00187 1.20810 1.03753 0.92238 1.05779 0.90218 0.87488 0.86446 0.92402 0.93281 0.91707 0.89609 0.87758 0.91388 0.84924 0.85829 0.86159 0.87160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.71 10.96 21.82 0.24 -43.47 16 2 C 0.03 1.73 5.13 85.23 0.44 2.17 16 3 Si 0.98 38.42 29.60 68.60 2.03 40.45 16 4 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 5 H -0.27 -9.89 7.11 99.48 0.71 -9.19 16 6 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 7 C -0.50 -27.33 9.04 23.40 0.21 -27.11 16 8 H 0.08 3.99 7.91 -2.91 -0.02 3.97 16 9 C 0.05 3.00 5.57 -21.28 -0.12 2.88 16 10 C -0.16 -8.38 8.65 22.48 0.19 -8.19 16 11 C -0.18 -8.36 8.96 22.11 0.20 -8.16 16 12 C 0.00 -0.14 6.71 22.79 0.15 0.01 16 13 O -0.34 -13.43 10.12 -89.91 -0.91 -14.34 16 14 C 0.06 1.78 4.73 71.98 0.34 2.12 16 15 C -0.11 -2.35 5.55 30.59 0.17 -2.18 16 16 C -0.10 -1.74 5.63 30.59 0.17 -1.57 16 17 C -0.01 -0.17 6.60 30.60 0.20 0.03 16 18 H 0.14 1.83 8.08 -2.39 -0.02 1.81 16 19 C -0.03 -0.40 11.42 71.98 0.82 0.42 16 20 O -0.41 -9.51 14.48 -148.98 -2.16 -11.66 16 21 C -0.12 -5.67 9.92 22.11 0.22 -5.46 16 22 C -0.21 -10.37 9.74 22.48 0.22 -10.16 16 23 H 0.29 13.66 8.30 -92.71 -0.77 12.89 16 24 H 0.11 5.92 6.15 -2.91 -0.02 5.91 16 25 H 0.12 4.86 6.27 -2.91 -0.02 4.85 16 26 H 0.06 1.69 7.65 -2.39 -0.02 1.68 16 27 H 0.05 1.50 7.65 -2.39 -0.02 1.48 16 28 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.07 1.33 8.13 -2.39 -0.02 1.31 16 32 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.12 4.93 8.06 -2.91 -0.02 4.90 16 35 H 0.11 5.14 8.06 -2.91 -0.02 5.11 16 Total: -1.00 -64.55 301.10 3.50 -61.05 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: 1.07 Total: 23.18 kcal Atomic # 6 Polarization: -58.42 SS G_CDS: 3.22 Total: -55.20 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: 0.24 Total: -43.47 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -3.07 Total: -26.01 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 2.03 Total: 40.45 kcal Total: -64.55 3.50 -61.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390262739.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.651 kcal (2) G-P(sol) polarization free energy of solvation -64.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds