Wall clock time and date at job start Mon Mar 30 2020 06:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46502 * 109.47460 * 2 1 4 4 C 1.35821 * 126.44107 * 270.00299 * 3 2 1 5 5 C 1.50703 * 125.03575 * 359.97438 * 4 3 2 6 6 N 1.30466 * 109.92389 * 179.97438 * 4 3 2 7 7 C 1.34331 * 109.76824 * 359.97438 * 6 4 3 8 8 C 1.38170 * 126.44170 * 89.99545 * 3 2 1 9 9 C 1.39094 * 134.09463 * 0.02562 * 8 3 2 10 10 F 1.35097 * 119.55684 * 0.02562 * 9 8 3 11 11 C 1.38713 * 120.89010 * 180.02562 * 9 8 3 12 12 C 1.37586 * 121.37276 * 0.26131 * 11 9 8 13 13 C 1.40798 * 120.17203 * 359.42395 * 12 11 9 14 14 C 1.40634 * 120.65075 * 180.29434 * 13 12 11 15 15 H 1.08003 * 120.00359 * 150.54741 * 14 13 12 16 16 C 1.40015 * 120.00131 * 330.54201 * 14 13 12 17 17 N 1.30845 * 119.99969 * 161.64075 * 16 14 13 18 18 Si 1.86793 * 119.99910 * 341.64087 * 16 14 13 19 19 H 1.48504 * 109.47064 * 95.41464 * 18 16 14 20 20 H 1.48502 * 109.47063 * 215.41447 * 18 16 14 21 21 H 1.48501 * 109.47447 * 335.41565 * 18 16 14 22 22 H 1.09002 * 109.47011 * 60.00444 * 1 2 3 23 23 H 1.09004 * 109.47599 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47313 * 300.00021 * 1 2 3 25 25 H 1.08998 * 109.47313 * 239.99979 * 2 1 3 26 26 H 1.09008 * 109.47100 * 120.00264 * 2 1 3 27 27 H 1.08993 * 109.47325 * 90.00394 * 5 4 3 28 28 H 1.09006 * 109.46517 * 210.00135 * 5 4 3 29 29 H 1.08994 * 109.47098 * 329.99726 * 5 4 3 30 30 H 1.08005 * 119.30969 * 179.97438 * 11 9 8 31 31 H 1.08000 * 119.91741 * 179.72280 * 12 11 9 32 32 H 0.96991 * 120.00291 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2873 2.1418 -1.0926 5 6 2.1281 1.6903 -2.5216 6 7 2.7038 3.3213 -0.7217 7 6 2.7283 3.3934 0.6194 8 6 2.2919 2.1550 1.1115 9 6 2.2160 1.9393 2.4835 10 9 1.7940 0.7428 2.9477 11 6 2.5677 2.9361 3.3817 12 6 2.9971 4.1700 2.9503 13 6 3.0998 4.4417 1.5726 14 6 3.5435 5.6973 1.1205 15 1 4.0645 5.7787 0.1780 16 6 3.3097 6.8419 1.8923 17 7 4.0071 7.9283 1.6792 18 14 2.0023 6.8180 3.2262 19 1 2.6347 6.5082 4.5337 20 1 1.3435 8.1469 3.2974 21 1 0.9894 5.7797 2.9080 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 1.1208 1.9237 -2.8664 28 1 2.8554 2.2061 -3.1487 29 1 2.2931 0.6147 -2.5833 30 1 2.4986 2.7411 4.4418 31 1 3.2608 4.9306 3.6703 32 1 3.8455 8.7211 2.2140 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396135375.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:08 Heat of formation + Delta-G solvation = 10.252007 kcal Electronic energy + Delta-G solvation = -17964.132404 eV Core-core repulsion = 15032.292218 eV Total energy + Delta-G solvation = -2931.840186 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -47.55464 -41.06018 -36.37295 -34.18922 -33.63650 -30.89796 -30.30834 -29.04283 -26.81101 -24.59396 -23.38149 -21.43501 -20.72830 -19.18486 -17.79196 -16.69364 -16.18934 -15.29941 -15.06835 -14.93820 -14.20535 -14.03051 -13.88988 -13.23289 -13.05587 -12.89561 -12.68760 -12.38582 -12.21009 -11.94498 -11.76331 -11.37171 -11.28529 -11.02654 -10.66242 -10.48184 -9.91540 -9.82346 -9.40158 -9.14238 -8.97142 -7.36461 -7.21375 -7.07297 -4.52041 1.99224 2.61964 3.03173 3.10378 3.26096 3.31124 3.68332 3.87559 4.29762 4.89162 4.96873 5.16200 5.21841 5.27309 5.44137 5.57682 5.69284 5.74740 5.81131 5.84672 5.95823 6.07909 6.21038 6.34499 6.56353 6.68614 6.88078 7.12433 7.34685 7.52174 7.62914 7.91875 8.11459 8.14307 8.37224 8.54858 9.02660 9.76985 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.026147 B = 0.008622 C = 0.007028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.622462 B = 3246.700850 C = 3982.871636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.111 3.889 3 N -0.484 5.484 4 C 0.192 3.808 5 C -0.058 4.058 6 N -0.456 5.456 7 C -0.004 4.004 8 C 0.071 3.929 9 C -0.082 4.082 10 F -0.175 7.175 11 C -0.050 4.050 12 C -0.281 4.281 13 C 0.138 3.862 14 C -0.384 4.384 15 H 0.103 0.897 16 C 0.079 3.921 17 N -0.778 5.778 18 Si 0.920 3.080 19 H -0.265 1.265 20 H -0.289 1.289 21 H -0.240 1.240 22 H 0.059 0.941 23 H 0.068 0.932 24 H 0.062 0.938 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.988 -9.623 -2.101 11.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.012 4.012 3 N -0.176 5.176 4 C -0.069 4.069 5 C -0.116 4.116 6 N -0.174 5.174 7 C -0.126 4.126 8 C -0.039 4.039 9 C -0.105 4.105 10 F -0.154 7.154 11 C -0.071 4.071 12 C -0.303 4.303 13 C 0.133 3.867 14 C -0.410 4.410 15 H 0.121 0.879 16 C -0.145 4.145 17 N -0.399 5.399 18 Si 0.746 3.254 19 H -0.190 1.190 20 H -0.216 1.216 21 H -0.162 1.162 22 H 0.078 0.922 23 H 0.087 0.913 24 H 0.081 0.919 25 H 0.101 0.899 26 H 0.105 0.895 27 H 0.090 0.910 28 H 0.103 0.897 29 H 0.084 0.916 30 H 0.127 0.873 31 H 0.131 0.869 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.697 -8.825 -2.670 10.347 hybrid contribution -0.762 -0.774 1.236 1.646 sum -5.459 -9.599 -1.433 11.135 Atomic orbital electron populations 1.22125 0.95033 1.02175 1.03026 1.21595 0.95096 0.80952 1.03525 1.44956 1.55324 1.12064 1.05242 1.23058 1.05606 0.87977 0.90239 1.20049 1.03047 1.00486 0.88037 1.69627 1.18554 1.16884 1.12354 1.19715 1.10073 0.93803 0.88996 1.18618 1.04720 0.93170 0.87410 1.15758 1.23257 0.83982 0.87517 1.91235 1.90041 1.44718 1.89430 1.20164 0.97292 0.92611 0.96983 1.20305 1.18324 0.97299 0.94344 1.17861 0.88706 0.91015 0.89114 1.19618 1.25927 0.89634 1.05797 0.87914 1.26447 0.96195 0.94730 0.97089 1.69684 1.32130 1.03096 1.34945 0.86131 0.81634 0.77945 0.79720 1.19037 1.21588 1.16235 0.92224 0.91303 0.91857 0.89915 0.89540 0.90992 0.89664 0.91633 0.87300 0.86927 0.89657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 10.24 37.15 0.38 -1.76 16 2 C 0.11 1.64 6.45 -4.04 -0.03 1.61 16 3 N -0.48 -9.59 2.81 -111.10 -0.31 -9.90 16 4 C 0.19 3.83 7.87 -154.73 -1.22 2.62 16 5 C -0.06 -0.79 10.18 36.01 0.37 -0.42 16 6 N -0.46 -11.13 11.22 -6.83 -0.08 -11.20 16 7 C 0.00 -0.09 7.19 -82.71 -0.59 -0.69 16 8 C 0.07 1.69 6.88 -83.94 -0.58 1.11 16 9 C -0.08 -1.90 7.31 -39.09 -0.29 -2.18 16 10 F -0.17 -3.75 16.04 2.25 0.04 -3.71 16 11 C -0.05 -1.14 9.92 -39.64 -0.39 -1.53 16 12 C -0.28 -6.81 7.18 -38.85 -0.28 -7.09 16 13 C 0.14 3.63 5.27 -104.71 -0.55 3.08 16 14 C -0.38 -10.38 9.60 -38.01 -0.36 -10.75 16 15 H 0.10 2.97 8.06 -52.48 -0.42 2.55 16 16 C 0.08 1.99 5.41 -17.31 -0.09 1.90 16 17 N -0.78 -19.70 13.93 55.55 0.77 -18.93 16 18 Si 0.92 20.19 24.52 -169.99 -4.17 16.03 16 19 H -0.26 -5.52 6.71 56.52 0.38 -5.14 16 20 H -0.29 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.24 -5.51 6.86 56.52 0.39 -5.12 16 22 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.08 0.95 7.01 -51.93 -0.36 0.59 16 26 H 0.09 1.31 7.17 -51.92 -0.37 0.94 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.06 0.71 7.02 -51.93 -0.36 0.35 16 30 H 0.11 2.13 8.06 -52.48 -0.42 1.71 16 31 H 0.11 2.62 4.71 -52.49 -0.25 2.37 16 32 H 0.29 6.60 8.30 -40.82 -0.34 6.26 16 LS Contribution 273.71 15.07 4.12 4.12 Total: -1.00 -29.82 273.71 -6.74 -36.56 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -3.48 Total: 1.15 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -3.64 Total: -14.12 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: 0.39 Total: -40.03 kcal Atomic # 9 Polarization: -3.75 SS G_CDS: 0.04 Total: -3.71 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.17 Total: 16.03 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.82 -6.74 -36.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396135375.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.813 kcal (2) G-P(sol) polarization free energy of solvation -29.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds