Wall clock time and date at job start Mon Mar 30 2020 06:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46502 * 109.47460 * 2 1 4 4 C 1.35821 * 126.44107 * 270.00299 * 3 2 1 5 5 C 1.50703 * 125.03575 * 359.97438 * 4 3 2 6 6 N 1.30466 * 109.92389 * 179.97438 * 4 3 2 7 7 C 1.34331 * 109.76824 * 359.97438 * 6 4 3 8 8 C 1.38170 * 126.44170 * 89.99545 * 3 2 1 9 9 C 1.39094 * 134.09463 * 0.02562 * 8 3 2 10 10 F 1.35097 * 119.55684 * 0.02562 * 9 8 3 11 11 C 1.38713 * 120.89010 * 180.02562 * 9 8 3 12 12 C 1.37586 * 121.37276 * 0.26131 * 11 9 8 13 13 C 1.40798 * 120.17203 * 359.42395 * 12 11 9 14 14 C 1.40634 * 120.65075 * 180.29434 * 13 12 11 15 15 H 1.08003 * 120.00359 * 150.54741 * 14 13 12 16 16 C 1.40015 * 120.00131 * 330.54201 * 14 13 12 17 17 N 1.30845 * 119.99969 * 161.64075 * 16 14 13 18 18 Si 1.86793 * 119.99910 * 341.64087 * 16 14 13 19 19 H 1.48504 * 109.47064 * 95.41464 * 18 16 14 20 20 H 1.48502 * 109.47063 * 215.41447 * 18 16 14 21 21 H 1.48501 * 109.47447 * 335.41565 * 18 16 14 22 22 H 1.09002 * 109.47011 * 60.00444 * 1 2 3 23 23 H 1.09004 * 109.47599 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47313 * 300.00021 * 1 2 3 25 25 H 1.08998 * 109.47313 * 239.99979 * 2 1 3 26 26 H 1.09008 * 109.47100 * 120.00264 * 2 1 3 27 27 H 1.08993 * 109.47325 * 90.00394 * 5 4 3 28 28 H 1.09006 * 109.46517 * 210.00135 * 5 4 3 29 29 H 1.08994 * 109.47098 * 329.99726 * 5 4 3 30 30 H 1.08005 * 119.30969 * 179.97438 * 11 9 8 31 31 H 1.08000 * 119.91741 * 179.72280 * 12 11 9 32 32 H 0.96991 * 120.00291 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2873 2.1418 -1.0926 5 6 2.1281 1.6903 -2.5216 6 7 2.7038 3.3213 -0.7217 7 6 2.7283 3.3934 0.6194 8 6 2.2919 2.1550 1.1115 9 6 2.2160 1.9393 2.4835 10 9 1.7940 0.7428 2.9477 11 6 2.5677 2.9361 3.3817 12 6 2.9971 4.1700 2.9503 13 6 3.0998 4.4417 1.5726 14 6 3.5435 5.6973 1.1205 15 1 4.0645 5.7787 0.1780 16 6 3.3097 6.8419 1.8923 17 7 4.0071 7.9283 1.6792 18 14 2.0023 6.8180 3.2262 19 1 2.6347 6.5082 4.5337 20 1 1.3435 8.1469 3.2974 21 1 0.9894 5.7797 2.9080 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 1.1208 1.9237 -2.8664 28 1 2.8554 2.2061 -3.1487 29 1 2.2931 0.6147 -2.5833 30 1 2.4986 2.7411 4.4418 31 1 3.2608 4.9306 3.6703 32 1 3.8455 8.7211 2.2140 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396135375.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:07 Heat of formation + Delta-G solvation = -7.763908 kcal Electronic energy + Delta-G solvation = -17964.913633 eV Core-core repulsion = 15032.292218 eV Total energy + Delta-G solvation = -2932.621415 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.36033 -42.74184 -38.15721 -35.64857 -35.48346 -32.45925 -31.89050 -30.57624 -28.41003 -26.47623 -24.67194 -23.17011 -22.47807 -20.81818 -19.55738 -18.34399 -17.96447 -17.06167 -16.74164 -16.62184 -15.85893 -15.67935 -15.14034 -15.02685 -14.79062 -14.33464 -13.95649 -13.78484 -13.64924 -13.39672 -13.05657 -12.96465 -12.86654 -12.54119 -12.30901 -12.11950 -11.74740 -11.59581 -11.16781 -10.84297 -10.71924 -9.12473 -9.07665 -8.92524 -6.47665 0.20700 0.78045 1.26309 1.36720 1.49416 1.81989 1.98795 2.11110 2.42493 3.33383 3.49581 3.73786 3.77189 3.85692 4.11325 4.22214 4.31870 4.44975 4.54773 4.69177 4.70151 4.77241 4.84787 4.98035 5.05471 5.10870 5.19153 5.37898 5.50190 5.68215 5.75474 6.06333 6.22014 6.48914 6.51621 6.61292 7.30224 7.97869 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.026147 B = 0.008622 C = 0.007028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.622462 B = 3246.700850 C = 3982.871636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.100 3.900 3 N -0.481 5.481 4 C 0.220 3.780 5 C -0.058 4.058 6 N -0.515 5.515 7 C -0.035 4.035 8 C 0.047 3.953 9 C -0.069 4.069 10 F -0.162 7.162 11 C -0.059 4.059 12 C -0.284 4.284 13 C 0.119 3.881 14 C -0.427 4.427 15 H 0.059 0.941 16 C 0.050 3.950 17 N -0.815 5.815 18 Si 0.972 3.028 19 H -0.242 1.242 20 H -0.270 1.270 21 H -0.259 1.259 22 H 0.065 0.935 23 H 0.106 0.894 24 H 0.032 0.968 25 H 0.126 0.874 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.106 0.894 30 H 0.144 0.856 31 H 0.121 0.879 32 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.640 -12.507 -2.041 14.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.020 4.020 3 N -0.172 5.172 4 C -0.043 4.043 5 C -0.116 4.116 6 N -0.235 5.235 7 C -0.156 4.156 8 C -0.064 4.064 9 C -0.092 4.092 10 F -0.142 7.142 11 C -0.079 4.079 12 C -0.306 4.306 13 C 0.114 3.886 14 C -0.454 4.454 15 H 0.077 0.923 16 C -0.170 4.170 17 N -0.438 5.438 18 Si 0.793 3.207 19 H -0.167 1.167 20 H -0.196 1.196 21 H -0.183 1.183 22 H 0.084 0.916 23 H 0.124 0.876 24 H 0.051 0.949 25 H 0.144 0.856 26 H 0.100 0.900 27 H 0.114 0.886 28 H 0.108 0.892 29 H 0.124 0.876 30 H 0.162 0.838 31 H 0.139 0.861 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.346 -11.735 -2.599 13.592 hybrid contribution -0.311 -0.218 1.035 1.102 sum -6.657 -11.954 -1.564 13.771 Atomic orbital electron populations 1.22095 0.93459 1.04262 1.01847 1.22080 0.96357 0.78147 1.05446 1.45376 1.54308 1.13621 1.03865 1.24329 1.00830 0.86547 0.92633 1.20390 1.04640 1.02958 0.83650 1.69640 1.21913 1.19844 1.12058 1.20058 1.10685 0.94797 0.90054 1.18775 1.05549 0.93441 0.88670 1.15967 1.21327 0.84297 0.87635 1.91265 1.89743 1.43920 1.89250 1.20495 0.96816 0.91761 0.98817 1.20443 1.18284 0.98286 0.93584 1.18141 0.88911 0.91027 0.90484 1.19407 1.29231 0.91486 1.05301 0.92279 1.27050 0.97409 0.93859 0.98653 1.69680 1.33571 1.03909 1.36642 0.85381 0.78922 0.78086 0.78275 1.16651 1.19643 1.18315 0.91563 0.87570 0.94853 0.85649 0.90024 0.88583 0.89240 0.87594 0.83800 0.86128 0.88468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.47 10.24 71.98 0.74 -2.73 16 2 C 0.10 2.54 6.45 86.38 0.56 3.09 16 3 N -0.48 -17.99 2.81 -505.42 -1.42 -19.41 16 4 C 0.22 8.38 7.87 137.89 1.08 9.46 16 5 C -0.06 -1.37 10.18 71.24 0.73 -0.64 16 6 N -0.52 -25.67 11.22 -175.52 -1.97 -27.64 16 7 C -0.03 -1.85 7.19 41.39 0.30 -1.55 16 8 C 0.05 2.22 6.88 38.83 0.27 2.48 16 9 C -0.07 -3.11 7.31 22.59 0.17 -2.94 16 10 F -0.16 -6.57 16.04 44.97 0.72 -5.84 16 11 C -0.06 -2.60 9.92 22.23 0.22 -2.37 16 12 C -0.28 -13.88 7.18 22.74 0.16 -13.71 16 13 C 0.12 6.53 5.27 -19.92 -0.10 6.42 16 14 C -0.43 -24.82 9.60 23.29 0.22 -24.59 16 15 H 0.06 3.79 8.06 -2.91 -0.02 3.77 16 16 C 0.05 2.62 5.41 85.27 0.46 3.09 16 17 N -0.81 -43.27 13.93 21.84 0.30 -42.96 16 18 Si 0.97 42.02 24.52 68.60 1.68 43.71 16 19 H -0.24 -9.50 6.71 99.48 0.67 -8.84 16 20 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 21 H -0.26 -11.92 6.86 99.48 0.68 -11.24 16 22 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.11 1.55 8.14 -2.38 -0.02 1.53 16 24 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.13 2.14 7.01 -2.39 -0.02 2.12 16 26 H 0.08 2.18 7.17 -2.38 -0.02 2.17 16 27 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 29 H 0.11 1.67 7.02 -2.39 -0.02 1.65 16 30 H 0.14 5.23 8.06 -2.91 -0.02 5.20 16 31 H 0.12 5.57 4.71 -2.91 -0.01 5.56 16 32 H 0.30 14.16 8.30 -92.71 -0.77 13.39 16 Total: -1.00 -69.87 273.71 5.20 -64.67 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 1.08 Total: 11.48 kcal Atomic # 6 Polarization: -28.80 SS G_CDS: 4.80 Total: -24.00 kcal Atomic # 7 Polarization: -86.93 SS G_CDS: -3.08 Total: -90.02 kcal Atomic # 9 Polarization: -6.57 SS G_CDS: 0.72 Total: -5.84 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 1.68 Total: 43.71 kcal Total: -69.87 5.20 -64.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396135375.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.907 kcal (2) G-P(sol) polarization free energy of solvation -69.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds