Wall clock time and date at job start Mon Mar 30 2020 06:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86806 * 119.99745 * 2 1 4 4 H 1.48497 * 109.47021 * 269.99473 * 3 2 1 5 5 H 1.48504 * 109.47306 * 29.99962 * 3 2 1 6 6 H 1.48500 * 109.46865 * 149.99922 * 3 2 1 7 7 C 1.39935 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99979 * 197.85343 * 7 2 1 9 9 C 1.41402 * 120.00066 * 17.85093 * 7 2 1 10 10 C 1.40712 * 120.24289 * 24.38216 * 9 7 2 11 11 C 1.37614 * 119.74424 * 180.02562 * 10 9 7 12 12 C 1.38631 * 120.24903 * 359.96986 * 11 10 9 13 13 C 1.50699 * 119.74833 * 180.02562 * 12 11 10 14 14 O 1.42902 * 109.47109 * 90.00647 * 13 12 11 15 15 C 1.42900 * 113.99768 * 179.97438 * 14 13 12 16 16 H 1.08996 * 110.44082 * 330.69857 * 15 14 13 17 17 C 1.54807 * 110.48547 * 208.14934 * 15 14 13 18 18 C 1.55230 * 101.99074 * 220.51932 * 17 15 14 19 19 O 1.44377 * 103.56089 * 36.88029 * 18 17 15 20 20 C 1.43737 * 106.98039 * 320.01259 * 19 18 17 21 21 C 1.38637 * 120.50353 * 0.30499 * 12 11 10 22 22 C 1.37625 * 120.24363 * 359.43974 * 21 12 11 23 23 H 0.97005 * 119.99577 * 0.02562 * 1 2 3 24 24 H 1.08004 * 120.12586 * 0.04078 * 10 9 7 25 25 H 1.08002 * 119.87526 * 180.02562 * 11 10 9 26 26 H 1.09009 * 109.47042 * 210.00397 * 13 12 11 27 27 H 1.08995 * 109.47653 * 330.00196 * 13 12 11 28 28 H 1.08997 * 110.91444 * 338.64405 * 17 15 14 29 29 H 1.09005 * 110.90798 * 102.24994 * 17 15 14 30 30 H 1.08997 * 110.51876 * 278.38717 * 18 17 15 31 31 H 1.08993 * 110.77880 * 155.50563 * 18 17 15 32 32 H 1.09007 * 109.88098 * 267.08990 * 20 19 18 33 33 H 1.09003 * 109.88046 * 145.93603 * 20 19 18 34 34 H 1.07994 * 119.88072 * 179.69640 * 21 12 11 35 35 H 1.07999 * 120.12603 * 180.27134 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4396 2.6528 0.7000 6 1 3.5398 1.4403 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0490 -1.2343 0.2873 9 6 1.3520 -2.4072 -0.3743 10 6 0.2207 -2.3627 -1.2098 11 6 -0.4101 -3.5322 -1.5678 12 6 0.0655 -4.7509 -1.1090 13 6 -0.6336 -6.0247 -1.5085 14 8 -0.0587 -6.5246 -2.7175 15 6 -0.6526 -7.7372 -3.1855 16 1 -1.0376 -8.3201 -2.3489 17 6 0.3738 -8.5654 -3.9962 18 6 -0.4938 -9.0950 -5.1694 19 8 -1.3828 -7.9943 -5.4567 20 6 -1.7775 -7.4328 -4.1938 21 6 1.1759 -4.8063 -0.2808 22 6 1.8256 -3.6497 0.0858 23 1 -0.4850 0.8401 -0.0004 24 1 -0.1510 -1.4144 -1.5690 25 1 -1.2783 -3.5006 -2.2094 26 1 -0.5181 -6.7660 -0.7177 27 1 -1.6932 -5.8237 -1.6660 28 1 1.1808 -7.9321 -4.3646 29 1 0.7682 -9.3879 -3.3994 30 1 -1.0590 -9.9742 -4.8601 31 1 0.1262 -9.3241 -6.0360 32 1 -2.7087 -7.8903 -3.8595 33 1 -1.9060 -6.3548 -4.2914 34 1 1.5348 -5.7607 0.0748 35 1 2.6930 -3.6954 0.7276 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399157057.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:37 Heat of formation + Delta-G solvation = -80.406471 kcal Electronic energy + Delta-G solvation = -17279.792755 eV Core-core repulsion = 14435.188876 eV Total energy + Delta-G solvation = -2844.603879 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.55249 -37.81276 -36.51676 -33.79130 -31.53161 -30.30631 -29.29959 -28.62128 -26.72689 -23.68746 -22.67416 -21.21778 -21.01065 -19.99199 -17.32687 -17.05957 -16.51975 -15.67478 -15.37017 -14.96080 -14.51923 -14.39250 -13.87432 -13.19420 -12.92768 -12.71768 -12.32943 -12.26063 -11.96024 -11.62960 -11.48879 -11.40928 -11.10738 -11.03906 -10.76434 -10.46612 -10.41070 -9.86584 -9.60961 -9.42474 -9.19442 -9.10587 -7.48746 -7.37749 -6.80462 -4.39525 2.65720 3.05127 3.06912 3.09263 3.12549 3.85433 3.90549 4.07511 4.53214 4.64553 4.82654 4.98495 5.05190 5.33442 5.49437 5.57209 5.64822 5.69689 5.74866 5.79697 5.92694 6.00663 6.14486 6.34262 6.37981 6.75918 6.92770 7.04075 7.25631 7.33961 7.58553 7.59960 7.84007 8.02581 8.09151 8.26450 8.60919 8.85770 8.94163 10.14001 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.046508 B = 0.004077 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.908802 B = 6866.597137 C = 7046.164824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.076 3.924 3 Si 0.909 3.091 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.461 4.461 8 H 0.079 0.921 9 C 0.116 3.884 10 C -0.169 4.169 11 C -0.079 4.079 12 C -0.226 4.226 13 C 0.126 3.874 14 O -0.367 6.367 15 C 0.052 3.948 16 H 0.070 0.930 17 C -0.153 4.153 18 C 0.047 3.953 19 O -0.376 6.376 20 C 0.024 3.976 21 C -0.069 4.069 22 C -0.230 4.230 23 H 0.281 0.719 24 H 0.119 0.881 25 H 0.087 0.913 26 H 0.039 0.961 27 H 0.040 0.960 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.059 0.941 31 H 0.094 0.906 32 H 0.059 0.941 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.231 -11.492 -4.665 12.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.490 4.490 8 H 0.097 0.903 9 C 0.114 3.886 10 C -0.189 4.189 11 C -0.098 4.098 12 C -0.227 4.227 13 C 0.051 3.949 14 O -0.286 6.286 15 C -0.007 4.007 16 H 0.088 0.912 17 C -0.191 4.191 18 C -0.030 4.030 19 O -0.295 6.295 20 C -0.053 4.053 21 C -0.087 4.087 22 C -0.250 4.250 23 H 0.092 0.908 24 H 0.137 0.863 25 H 0.105 0.895 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.110 0.890 29 H 0.102 0.898 30 H 0.077 0.923 31 H 0.112 0.888 32 H 0.077 0.923 33 H 0.113 0.887 34 H 0.105 0.895 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.362 -11.154 -4.933 12.423 hybrid contribution 0.115 0.563 0.464 0.738 sum -2.247 -10.591 -4.470 11.713 Atomic orbital electron populations 1.69831 1.07641 1.29330 1.34690 1.25939 0.94738 1.01415 0.92130 0.86294 0.80494 0.80442 0.79402 1.19187 1.20278 1.18567 1.19650 0.98225 0.91289 1.39816 0.90298 1.17663 0.90901 0.92043 0.88036 1.21300 0.99425 0.96748 1.01399 1.20522 0.98285 0.92628 0.98358 1.18720 1.02765 0.91941 1.09261 1.21205 0.95257 0.93920 0.84548 1.88201 1.59865 1.38109 1.42452 1.23421 0.93215 0.87798 0.96223 0.91173 1.23257 0.99207 0.99659 0.96967 1.23554 0.91382 0.89918 0.98134 1.88879 1.65635 1.47305 1.27657 1.23788 0.96693 1.00530 0.84273 1.20359 0.94648 0.96434 0.97294 1.20949 1.03790 0.92896 1.07360 0.90779 0.86345 0.89470 0.94247 0.94214 0.89043 0.89828 0.92321 0.88787 0.92256 0.88717 0.89494 0.88892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.35 10.95 55.55 0.61 -19.74 16 2 C 0.08 1.91 5.14 -17.34 -0.09 1.82 16 3 Si 0.91 18.59 29.60 -169.99 -5.03 13.56 16 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 6 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 7 C -0.46 -12.27 9.05 -37.74 -0.34 -12.61 16 8 H 0.08 2.02 7.91 -52.48 -0.41 1.60 16 9 C 0.12 3.13 5.58 -106.82 -0.60 2.54 16 10 C -0.17 -4.47 8.70 -38.88 -0.34 -4.80 16 11 C -0.08 -1.90 9.67 -39.66 -0.38 -2.28 16 12 C -0.23 -5.07 5.53 -104.33 -0.58 -5.65 16 13 C 0.13 2.29 5.90 36.01 0.21 2.50 16 14 O -0.37 -6.62 9.94 -35.23 -0.35 -6.97 16 15 C 0.05 0.71 3.51 -25.20 -0.09 0.63 16 16 H 0.07 0.82 7.84 -51.93 -0.41 0.42 16 17 C -0.15 -1.78 6.92 -24.60 -0.17 -1.95 16 18 C 0.05 0.49 7.72 38.34 0.30 0.79 16 19 O -0.38 -5.31 11.52 -35.23 -0.41 -5.71 16 20 C 0.02 0.32 7.52 37.73 0.28 0.61 16 21 C -0.07 -1.58 9.67 -39.66 -0.38 -1.97 16 22 C -0.23 -5.74 9.80 -38.87 -0.38 -6.13 16 23 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 24 H 0.12 3.20 6.16 -52.48 -0.32 2.88 16 25 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 26 H 0.04 0.65 8.04 -51.92 -0.42 0.23 16 27 H 0.04 0.67 8.08 -51.93 -0.42 0.25 16 28 H 0.09 1.20 8.09 -51.93 -0.42 0.78 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.09 1.38 7.97 -51.93 -0.41 0.97 16 34 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 35 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 297.16 15.07 4.48 4.48 Total: -1.00 -28.74 297.16 -8.17 -36.90 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -4.91 Total: 4.00 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: -2.56 Total: -26.51 kcal Atomic # 7 Polarization: -20.35 SS G_CDS: 0.61 Total: -19.74 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: -0.76 Total: -12.69 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.74 -8.17 -36.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399157057.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.505 kcal (2) G-P(sol) polarization free energy of solvation -28.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds