Wall clock time and date at job start Mon Mar 30 2020 06:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86806 * 119.99745 * 2 1 4 4 H 1.48497 * 109.47021 * 269.99473 * 3 2 1 5 5 H 1.48504 * 109.47306 * 29.99962 * 3 2 1 6 6 H 1.48500 * 109.46865 * 149.99922 * 3 2 1 7 7 C 1.39935 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99979 * 197.85343 * 7 2 1 9 9 C 1.41402 * 120.00066 * 17.85093 * 7 2 1 10 10 C 1.40712 * 120.24289 * 24.38216 * 9 7 2 11 11 C 1.37614 * 119.74424 * 180.02562 * 10 9 7 12 12 C 1.38631 * 120.24903 * 359.96986 * 11 10 9 13 13 C 1.50699 * 119.74833 * 180.02562 * 12 11 10 14 14 O 1.42902 * 109.47109 * 90.00647 * 13 12 11 15 15 C 1.42900 * 113.99768 * 179.97438 * 14 13 12 16 16 H 1.08996 * 110.44082 * 330.69857 * 15 14 13 17 17 C 1.54807 * 110.48547 * 208.14934 * 15 14 13 18 18 C 1.55230 * 101.99074 * 220.51932 * 17 15 14 19 19 O 1.44377 * 103.56089 * 36.88029 * 18 17 15 20 20 C 1.43737 * 106.98039 * 320.01259 * 19 18 17 21 21 C 1.38637 * 120.50353 * 0.30499 * 12 11 10 22 22 C 1.37625 * 120.24363 * 359.43974 * 21 12 11 23 23 H 0.97005 * 119.99577 * 0.02562 * 1 2 3 24 24 H 1.08004 * 120.12586 * 0.04078 * 10 9 7 25 25 H 1.08002 * 119.87526 * 180.02562 * 11 10 9 26 26 H 1.09009 * 109.47042 * 210.00397 * 13 12 11 27 27 H 1.08995 * 109.47653 * 330.00196 * 13 12 11 28 28 H 1.08997 * 110.91444 * 338.64405 * 17 15 14 29 29 H 1.09005 * 110.90798 * 102.24994 * 17 15 14 30 30 H 1.08997 * 110.51876 * 278.38717 * 18 17 15 31 31 H 1.08993 * 110.77880 * 155.50563 * 18 17 15 32 32 H 1.09007 * 109.88098 * 267.08990 * 20 19 18 33 33 H 1.09003 * 109.88046 * 145.93603 * 20 19 18 34 34 H 1.07994 * 119.88072 * 179.69640 * 21 12 11 35 35 H 1.07999 * 120.12603 * 180.27134 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4396 2.6528 0.7000 6 1 3.5398 1.4403 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0490 -1.2343 0.2873 9 6 1.3520 -2.4072 -0.3743 10 6 0.2207 -2.3627 -1.2098 11 6 -0.4101 -3.5322 -1.5678 12 6 0.0655 -4.7509 -1.1090 13 6 -0.6336 -6.0247 -1.5085 14 8 -0.0587 -6.5246 -2.7175 15 6 -0.6526 -7.7372 -3.1855 16 1 -1.0376 -8.3201 -2.3489 17 6 0.3738 -8.5654 -3.9962 18 6 -0.4938 -9.0950 -5.1694 19 8 -1.3828 -7.9943 -5.4567 20 6 -1.7775 -7.4328 -4.1938 21 6 1.1759 -4.8063 -0.2808 22 6 1.8256 -3.6497 0.0858 23 1 -0.4850 0.8401 -0.0004 24 1 -0.1510 -1.4144 -1.5690 25 1 -1.2783 -3.5006 -2.2094 26 1 -0.5181 -6.7660 -0.7177 27 1 -1.6932 -5.8237 -1.6660 28 1 1.1808 -7.9321 -4.3646 29 1 0.7682 -9.3879 -3.3994 30 1 -1.0590 -9.9742 -4.8601 31 1 0.1262 -9.3241 -6.0360 32 1 -2.7087 -7.8903 -3.8595 33 1 -1.9060 -6.3548 -4.2914 34 1 1.5348 -5.7607 0.0748 35 1 2.6930 -3.6954 0.7276 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399157057.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:36 Heat of formation + Delta-G solvation = -97.172428 kcal Electronic energy + Delta-G solvation = -17280.519782 eV Core-core repulsion = 14435.188876 eV Total energy + Delta-G solvation = -2845.330905 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.60790 -39.53022 -37.90310 -35.63388 -32.83932 -31.80209 -31.18835 -29.67235 -28.42480 -25.36861 -23.64036 -22.92464 -22.23443 -21.79323 -19.25277 -18.16988 -17.57604 -17.17474 -16.79518 -16.27287 -15.91587 -15.75086 -15.59658 -14.73554 -14.53308 -13.99873 -13.83872 -13.69758 -13.40374 -13.21072 -12.92477 -12.73834 -12.58246 -12.43532 -12.28541 -12.04925 -11.65548 -11.42824 -11.29762 -11.04071 -10.84667 -10.33194 -9.40807 -9.29872 -8.67338 -6.37809 0.85835 1.12342 1.37472 1.49012 1.51087 2.19496 2.56698 2.92406 3.05781 3.57447 3.75344 3.90484 4.04567 4.20574 4.26017 4.27839 4.41013 4.50429 4.58843 4.65078 4.66407 4.76150 4.81475 4.94977 5.01903 5.08105 5.13531 5.33793 5.42961 5.67510 5.84041 5.91641 6.07275 6.19397 6.34812 6.40017 6.66718 6.90556 6.99977 8.29972 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.046508 B = 0.004077 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.908802 B = 6866.597137 C = 7046.164824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.035 3.965 3 Si 0.984 3.016 4 H -0.263 1.263 5 H -0.266 1.266 6 H -0.257 1.257 7 C -0.500 4.500 8 H 0.077 0.923 9 C 0.083 3.917 10 C -0.195 4.195 11 C -0.088 4.088 12 C -0.222 4.222 13 C 0.131 3.869 14 O -0.394 6.394 15 C 0.044 3.956 16 H 0.097 0.903 17 C -0.152 4.152 18 C 0.046 3.954 19 O -0.403 6.403 20 C 0.023 3.977 21 C -0.072 4.072 22 C -0.247 4.247 23 H 0.289 0.711 24 H 0.101 0.899 25 H 0.104 0.896 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.110 0.890 30 H 0.085 0.915 31 H 0.108 0.892 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.119 0.881 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.424 -13.250 -4.737 14.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.180 4.180 3 Si 0.805 3.195 4 H -0.188 1.188 5 H -0.190 1.190 6 H -0.181 1.181 7 C -0.529 4.529 8 H 0.095 0.905 9 C 0.081 3.919 10 C -0.215 4.215 11 C -0.106 4.106 12 C -0.223 4.223 13 C 0.056 3.944 14 O -0.314 6.314 15 C -0.014 4.014 16 H 0.115 0.885 17 C -0.189 4.189 18 C -0.030 4.030 19 O -0.323 6.323 20 C -0.054 4.054 21 C -0.090 4.090 22 C -0.267 4.267 23 H 0.100 0.900 24 H 0.119 0.881 25 H 0.122 0.878 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.128 0.872 30 H 0.103 0.897 31 H 0.126 0.874 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.137 0.863 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.560 -12.939 -5.009 14.109 hybrid contribution 0.121 0.919 0.426 1.021 sum -2.440 -12.019 -4.583 13.093 Atomic orbital electron populations 1.69879 1.09075 1.30691 1.35149 1.26797 0.95514 1.04617 0.91063 0.85174 0.79112 0.75720 0.79525 1.18773 1.19014 1.18089 1.19897 0.98469 0.92576 1.41984 0.90507 1.18019 0.91724 0.93225 0.88939 1.21278 1.00435 0.97042 1.02697 1.20797 0.98685 0.92705 0.98439 1.19240 1.02038 0.93449 1.07550 1.21113 0.95229 0.92446 0.85628 1.88128 1.60682 1.40354 1.42212 1.23745 0.93853 0.86520 0.97243 0.88484 1.23297 0.98352 0.99825 0.97459 1.23790 0.91172 0.89651 0.98410 1.88847 1.66450 1.48674 1.28309 1.23795 0.97756 0.99620 0.84189 1.20727 0.94405 0.97068 0.96805 1.21187 1.04484 0.93177 1.07823 0.90005 0.88094 0.87834 0.91764 0.92817 0.91193 0.87186 0.89681 0.87404 0.89810 0.90899 0.86309 0.88204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.62 10.95 21.82 0.24 -43.38 16 2 C 0.04 1.81 5.14 85.25 0.44 2.25 16 3 Si 0.98 38.63 29.60 68.60 2.03 40.66 16 4 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 5 H -0.27 -9.82 7.11 99.48 0.71 -9.11 16 6 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 7 C -0.50 -27.63 9.05 23.46 0.21 -27.42 16 8 H 0.08 4.09 7.91 -2.91 -0.02 4.06 16 9 C 0.08 4.65 5.58 -21.29 -0.12 4.53 16 10 C -0.20 -10.66 8.70 22.73 0.20 -10.47 16 11 C -0.09 -4.24 9.67 22.22 0.21 -4.03 16 12 C -0.22 -9.72 5.53 -19.68 -0.11 -9.82 16 13 C 0.13 4.42 5.90 71.24 0.42 4.85 16 14 O -0.39 -13.39 9.94 -148.98 -1.48 -14.87 16 15 C 0.04 1.08 3.51 31.58 0.11 1.19 16 16 H 0.10 1.85 7.84 -2.39 -0.02 1.83 16 17 C -0.15 -3.11 6.92 31.98 0.22 -2.89 16 18 C 0.05 0.83 7.72 72.75 0.56 1.39 16 19 O -0.40 -10.64 11.52 -148.98 -1.72 -12.35 16 20 C 0.02 0.58 7.52 72.36 0.54 1.12 16 21 C -0.07 -3.22 9.67 22.22 0.21 -3.01 16 22 C -0.25 -12.50 9.80 22.73 0.22 -12.28 16 23 H 0.29 13.79 8.30 -92.70 -0.77 13.02 16 24 H 0.10 5.75 6.16 -2.91 -0.02 5.73 16 25 H 0.10 4.52 8.06 -2.91 -0.02 4.49 16 26 H 0.06 1.86 8.04 -2.38 -0.02 1.84 16 27 H 0.05 1.66 8.08 -2.39 -0.02 1.64 16 28 H 0.07 1.73 8.09 -2.39 -0.02 1.72 16 29 H 0.11 1.65 8.14 -2.38 -0.02 1.63 16 30 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 33 H 0.07 2.08 7.97 -2.39 -0.02 2.06 16 34 H 0.12 4.49 8.06 -2.91 -0.02 4.46 16 35 H 0.10 4.74 8.06 -2.91 -0.02 4.72 16 Total: -1.00 -63.84 297.16 3.27 -60.57 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: 1.07 Total: 23.95 kcal Atomic # 6 Polarization: -57.71 SS G_CDS: 3.13 Total: -54.58 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: 0.24 Total: -43.38 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -3.20 Total: -27.22 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 2.03 Total: 40.66 kcal Total: -63.84 3.27 -60.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399157057.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.600 kcal (2) G-P(sol) polarization free energy of solvation -63.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds