Wall clock time and date at job start Mon Mar 30 2020 06:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86804 * 119.99843 * 2 1 4 4 H 1.48495 * 109.47310 * 84.67693 * 3 2 1 5 5 H 1.48497 * 109.47000 * 204.67863 * 3 2 1 6 6 H 1.48502 * 109.47178 * 324.67823 * 3 2 1 7 7 C 1.39943 * 120.00306 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99952 * 20.09787 * 7 2 1 9 9 C 1.41398 * 120.00278 * 200.10217 * 7 2 1 10 10 C 1.40716 * 120.24029 * 25.34492 * 9 7 2 11 11 C 1.37618 * 119.73823 * 179.72260 * 10 9 7 12 12 C 1.38634 * 120.25120 * 0.57955 * 11 10 9 13 13 C 1.50703 * 119.74836 * 179.69701 * 12 11 10 14 14 O 1.42903 * 109.47101 * 269.97574 * 13 12 11 15 15 C 1.42899 * 113.99956 * 179.97438 * 14 13 12 16 16 H 1.09001 * 110.74938 * 32.02674 * 15 14 13 17 17 C 1.55307 * 110.84312 * 155.71741 * 15 14 13 18 18 C 1.54952 * 100.93833 * 152.32741 * 17 15 14 19 19 O 1.43643 * 105.13569 * 323.55121 * 18 17 15 20 20 C 1.43236 * 109.96989 * 24.42932 * 19 18 17 21 21 C 1.38634 * 120.49842 * 359.67456 * 12 11 10 22 22 C 1.37613 * 120.25036 * 0.04146 * 21 12 11 23 23 H 0.97002 * 119.99947 * 185.11279 * 1 2 3 24 24 H 1.07995 * 120.13015 * 0.02562 * 10 9 7 25 25 H 1.08008 * 119.87254 * 180.27697 * 11 10 9 26 26 H 1.08996 * 109.47048 * 29.97719 * 13 12 11 27 27 H 1.09003 * 109.46891 * 149.98413 * 13 12 11 28 28 H 1.09005 * 111.12438 * 270.23924 * 17 15 14 29 29 H 1.08998 * 111.13054 * 34.40653 * 17 15 14 30 30 H 1.09003 * 110.30582 * 204.63505 * 18 17 15 31 31 H 1.08995 * 110.39297 * 82.51759 * 18 17 15 32 32 H 1.09000 * 109.83029 * 238.77074 * 20 19 18 33 33 H 1.09006 * 109.82963 * 117.79825 * 20 19 18 34 34 H 1.07997 * 119.87293 * 180.02562 * 21 12 11 35 35 H 1.08005 * 120.12653 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3772 2.1115 1.3940 5 1 3.5914 1.4104 -0.5846 6 1 1.5004 2.6177 -0.8095 7 6 2.0080 -1.2119 0.0005 8 1 1.5174 -2.1189 -0.3205 9 6 3.3574 -1.2490 0.4214 10 6 3.8498 -0.2748 1.3094 11 6 5.1634 -0.3241 1.7168 12 6 6.0036 -1.3215 1.2463 13 6 7.4419 -1.3607 1.6946 14 8 8.2423 -0.5912 0.7949 15 6 9.6308 -0.5623 1.1318 16 1 9.9326 -1.4961 1.6061 17 6 10.4978 -0.2692 -0.1230 18 6 11.7303 0.4116 0.5239 19 8 11.2020 1.1913 1.6084 20 6 9.9508 0.6441 2.0402 21 6 5.5305 -2.2832 0.3671 22 6 4.2191 -2.2569 -0.0492 23 1 -0.4850 -0.8367 0.0749 24 1 3.1982 0.5056 1.6736 25 1 5.5425 0.4199 2.4018 26 1 7.5210 -0.9439 2.6986 27 1 7.7925 -2.3928 1.7008 28 1 10.7798 -1.1920 -0.6300 29 1 9.9860 0.4105 -0.8042 30 1 12.2285 1.0575 -0.1991 31 1 12.4247 -0.3393 0.9007 32 1 9.1667 1.3955 1.9470 33 1 10.0288 0.3159 3.0768 34 1 6.1938 -3.0559 0.0072 35 1 3.8528 -3.0069 -0.7346 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399157062.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:39 Heat of formation + Delta-G solvation = -100.828231 kcal Electronic energy + Delta-G solvation = -17402.747069 eV Core-core repulsion = 14557.257636 eV Total energy + Delta-G solvation = -2845.489433 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.63791 -39.75843 -38.00786 -35.76542 -33.13174 -31.97299 -31.55509 -29.77285 -28.32059 -24.94359 -23.43763 -23.37655 -22.44434 -21.82872 -20.12175 -18.30336 -17.70416 -17.17561 -16.55794 -16.31366 -16.04893 -15.89253 -15.42770 -15.24575 -14.49305 -14.28814 -14.13410 -14.05348 -13.47562 -13.27153 -13.16559 -12.64353 -12.50590 -12.42242 -12.09516 -11.96976 -11.69467 -11.57469 -11.27840 -10.96396 -10.58357 -10.44676 -9.60303 -9.52329 -9.35600 -6.61964 0.69184 0.85617 1.34743 1.51402 1.75043 2.15421 2.40677 2.76224 3.08956 3.48615 3.52994 3.90051 3.98543 4.15286 4.15442 4.24750 4.33446 4.43499 4.52133 4.53109 4.70930 4.73532 4.76210 4.82616 4.94960 5.02559 5.07905 5.12485 5.37742 5.50400 5.68236 5.80556 5.95653 6.00237 6.09171 6.33356 6.38590 6.61756 6.77508 7.92616 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.036609 B = 0.004826 C = 0.004519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.654349 B = 5800.550031 C = 6193.904158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.015 3.985 3 Si 1.104 2.896 4 H -0.258 1.258 5 H -0.266 1.266 6 H -0.279 1.279 7 C -0.549 4.549 8 H 0.050 0.950 9 C 0.078 3.922 10 C -0.262 4.262 11 C -0.058 4.058 12 C -0.216 4.216 13 C 0.127 3.873 14 O -0.389 6.389 15 C 0.048 3.952 16 H 0.098 0.902 17 C -0.152 4.152 18 C 0.050 3.950 19 O -0.404 6.404 20 C 0.027 3.973 21 C -0.058 4.058 22 C -0.237 4.237 23 H 0.280 0.720 24 H 0.101 0.899 25 H 0.124 0.876 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.107 0.893 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.126 0.874 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.179 -0.488 2.892 20.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.200 4.200 3 Si 0.925 3.075 4 H -0.184 1.184 5 H -0.191 1.191 6 H -0.206 1.206 7 C -0.578 4.578 8 H 0.068 0.932 9 C 0.076 3.924 10 C -0.281 4.281 11 C -0.076 4.076 12 C -0.217 4.217 13 C 0.052 3.948 14 O -0.309 6.309 15 C -0.010 4.010 16 H 0.116 0.884 17 C -0.190 4.190 18 C -0.026 4.026 19 O -0.324 6.324 20 C -0.050 4.050 21 C -0.076 4.076 22 C -0.256 4.256 23 H 0.090 0.910 24 H 0.119 0.881 25 H 0.142 0.858 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.126 0.874 29 H 0.092 0.908 30 H 0.118 0.882 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.144 0.856 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 19.870 1.354 2.741 20.103 hybrid contribution -0.880 -2.321 -0.002 2.482 sum 18.990 -0.967 2.739 19.211 Atomic orbital electron populations 1.70598 1.08696 1.32347 1.34450 1.28267 0.95726 1.06731 0.89236 0.83200 0.74864 0.70681 0.78742 1.18397 1.19086 1.20614 1.20691 0.97411 0.96879 1.42852 0.93215 1.17968 0.92674 0.92101 0.89670 1.21127 0.97435 1.03891 1.05658 1.20840 0.92648 0.96510 0.97631 1.19322 0.94972 1.00353 1.07007 1.21179 0.86621 0.95028 0.91961 1.88097 1.17551 1.72789 1.52465 1.23830 0.82512 0.98479 0.96156 0.88438 1.23334 0.95345 1.03041 0.97231 1.23536 0.95305 0.95344 0.88397 1.88380 1.36458 1.54657 1.52948 1.23694 0.86222 0.96204 0.98912 1.20851 0.94444 0.97500 0.94800 1.21167 0.94701 1.03323 1.06411 0.90951 0.88136 0.85794 0.91940 0.91437 0.87437 0.90800 0.88163 0.89916 0.91791 0.89788 0.85613 0.88429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.92 13.65 21.83 0.30 -46.62 16 2 C 0.02 0.82 5.40 85.26 0.46 1.29 16 3 Si 1.10 50.29 24.83 68.60 1.70 51.99 16 4 H -0.26 -10.83 6.64 99.48 0.66 -10.17 16 5 H -0.27 -12.25 6.83 99.48 0.68 -11.57 16 6 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 7 C -0.55 -31.19 9.44 23.46 0.22 -30.97 16 8 H 0.05 2.97 8.06 -2.91 -0.02 2.95 16 9 C 0.08 4.10 5.20 -21.29 -0.11 3.99 16 10 C -0.26 -12.61 7.20 22.73 0.16 -12.44 16 11 C -0.06 -2.40 9.67 22.22 0.21 -2.19 16 12 C -0.22 -8.21 5.53 -19.67 -0.11 -8.32 16 13 C 0.13 3.64 5.93 71.24 0.42 4.06 16 14 O -0.39 -11.52 10.06 -148.98 -1.50 -13.02 16 15 C 0.05 1.04 3.45 31.85 0.11 1.15 16 16 H 0.10 1.64 7.89 -2.39 -0.02 1.62 16 17 C -0.15 -2.79 6.89 32.05 0.22 -2.57 16 18 C 0.05 0.81 7.78 72.65 0.56 1.38 16 19 O -0.40 -9.45 11.36 -148.98 -1.69 -11.14 16 20 C 0.03 0.59 7.58 72.45 0.55 1.14 16 21 C -0.06 -2.32 9.67 22.22 0.21 -2.11 16 22 C -0.24 -11.19 9.80 22.73 0.22 -10.97 16 23 H 0.28 15.47 8.73 -92.71 -0.81 14.66 16 24 H 0.10 4.79 4.26 -2.91 -0.01 4.78 16 25 H 0.12 4.34 8.06 -2.91 -0.02 4.32 16 26 H 0.06 1.56 8.08 -2.39 -0.02 1.54 16 27 H 0.07 1.62 8.05 -2.39 -0.02 1.60 16 28 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 29 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 1.63 8.05 -2.39 -0.02 1.61 16 33 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.13 4.18 8.06 -2.91 -0.02 4.15 16 35 H 0.10 4.47 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -62.74 292.01 2.91 -59.83 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 0.96 Total: 15.52 kcal Atomic # 6 Polarization: -59.70 SS G_CDS: 3.15 Total: -56.56 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: 0.30 Total: -46.62 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -3.19 Total: -24.17 kcal Atomic # 14 Polarization: 50.29 SS G_CDS: 1.70 Total: 51.99 kcal Total: -62.74 2.91 -59.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399157062.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.999 kcal (2) G-P(sol) polarization free energy of solvation -62.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds