Wall clock time and date at job start Mon Mar 30 2020 06:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47226 * 2 1 4 4 C 1.50695 * 109.46902 * 239.99636 * 2 1 3 5 5 H 1.08002 * 119.99936 * 275.00187 * 4 2 1 6 6 C 1.37876 * 120.00154 * 95.00391 * 4 2 1 7 7 N 1.31516 * 120.00654 * 184.91410 * 6 4 2 8 8 Si 1.86801 * 119.99793 * 4.91303 * 6 4 2 9 9 H 1.48496 * 109.47326 * 84.83191 * 8 6 4 10 10 H 1.48504 * 109.47190 * 204.82937 * 8 6 4 11 11 H 1.48498 * 109.47247 * 324.82935 * 8 6 4 12 12 N 1.46898 * 109.46986 * 120.00082 * 2 1 3 13 13 C 1.46905 * 110.99744 * 274.99351 * 12 2 1 14 14 C 1.50695 * 109.47084 * 180.02562 * 13 12 2 15 15 C 1.38445 * 119.82957 * 90.00377 * 14 13 12 16 16 C 1.37868 * 120.22162 * 180.25649 * 15 14 13 17 17 C 1.39686 * 119.86975 * 359.46814 * 16 15 14 18 18 C 1.43204 * 120.16814 * 180.27346 * 17 16 15 19 19 N 8.91907 * 108.67794 * 111.92721 * 2 1 3 20 20 C 1.39863 * 119.66098 * 0.55202 * 17 16 15 21 21 F 1.35098 * 120.11055 * 179.70697 * 20 17 16 22 22 C 1.38240 * 119.82928 * 270.02518 * 14 13 12 23 23 H 1.09000 * 109.47142 * 55.04995 * 1 2 3 24 24 H 1.08992 * 109.47406 * 175.05871 * 1 2 3 25 25 H 1.09000 * 109.47045 * 295.05752 * 1 2 3 26 26 H 0.96995 * 120.00570 * 180.02562 * 7 6 4 27 27 H 1.00901 * 111.00064 * 151.04635 * 12 2 1 28 28 H 1.09009 * 109.46739 * 60.00386 * 13 12 2 29 29 H 1.08991 * 109.47459 * 300.00321 * 13 12 2 30 30 H 1.08004 * 119.88662 * 359.97438 * 15 14 13 31 31 H 1.08003 * 120.06201 * 179.74246 * 16 15 14 32 32 H 1.08003 * 119.93599 * 0.02562 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1354 -1.7856 -1.2289 6 6 2.3602 0.0119 -2.3580 7 7 2.7059 -0.6133 -3.4622 8 14 2.3136 1.8789 -2.3175 9 1 3.5991 2.3947 -1.7822 10 1 2.1059 2.3989 -3.6929 11 1 1.1986 2.3274 -1.4452 12 7 2.0196 -0.6925 1.1994 13 6 2.0825 0.2227 2.3468 14 6 2.5885 -0.5214 3.5557 15 6 3.9476 -0.5710 3.8147 16 6 4.4198 -1.2539 4.9154 17 6 3.5228 -1.8883 5.7780 18 6 4.0058 -2.5945 6.9264 19 7 4.3863 -3.1552 7.8381 20 6 2.1508 -1.8353 5.5111 21 9 1.2757 -2.4507 6.3360 22 6 1.6933 -1.1512 4.3999 23 1 -0.3633 0.5887 -0.8423 24 1 -0.3634 -1.0237 -0.0885 25 1 -0.3633 0.4352 0.9309 26 1 2.9370 -0.1051 -4.2554 27 1 2.9173 -1.1205 1.0287 28 1 1.0871 0.6164 2.5525 29 1 2.7589 1.0462 2.1182 30 1 4.6406 -0.0769 3.1498 31 1 5.4809 -1.2944 5.1127 32 1 0.6344 -1.1090 4.1912 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404106061.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:53 Heat of formation + Delta-G solvation = -13.956869 kcal Electronic energy + Delta-G solvation = -16739.154866 eV Core-core repulsion = 13806.264904 eV Total energy + Delta-G solvation = -2932.889962 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.08850 -40.44577 -38.05821 -37.31055 -34.66428 -33.16356 -31.72021 -30.49981 -27.39495 -26.50333 -23.89571 -23.06129 -21.47518 -20.21262 -19.14996 -17.91871 -17.74585 -16.92132 -16.84310 -15.86411 -15.67488 -15.37349 -15.01321 -14.87672 -14.74981 -14.51901 -14.37606 -14.06134 -13.80833 -13.27213 -13.01460 -12.85750 -12.79167 -12.53319 -12.46856 -12.17336 -11.87762 -11.76180 -10.98902 -10.70962 -10.01789 -9.78487 -9.01873 -8.25969 -6.32108 -0.43986 0.18850 1.37924 1.41354 1.45815 1.51021 1.77944 2.37246 2.63257 2.68754 3.02243 3.09145 3.60446 3.73483 3.95415 4.19658 4.25016 4.47564 4.62072 4.66531 4.83278 4.90773 4.96956 5.05439 5.09037 5.13156 5.18992 5.50708 5.58033 5.72959 5.77662 6.07602 6.29333 6.57834 6.74527 6.90428 7.37773 8.90680 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.039144 B = 0.004491 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.129548 B = 6232.562912 C = 6469.266973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.184 3.816 3 H 0.012 0.988 4 C -0.521 4.521 5 H 0.035 0.965 6 C 0.015 3.985 7 N -0.947 5.947 8 Si 0.941 3.059 9 H -0.264 1.264 10 H -0.293 1.293 11 H -0.243 1.243 12 N -0.683 5.683 13 C 0.084 3.916 14 C -0.013 4.013 15 C -0.119 4.119 16 C -0.026 4.026 17 C -0.078 4.078 18 C 0.277 3.723 19 N -0.453 5.453 20 C 0.135 3.865 21 F -0.140 7.140 22 C -0.134 4.134 23 H 0.034 0.966 24 H 0.039 0.961 25 H 0.054 0.946 26 H 0.266 0.734 27 H 0.340 0.660 28 H 0.089 0.911 29 H 0.051 0.949 30 H 0.159 0.841 31 H 0.170 0.830 32 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.025 5.128 15.715 16.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.075 3.925 3 H 0.030 0.970 4 C -0.559 4.559 5 H 0.053 0.947 6 C -0.183 4.183 7 N -0.587 5.587 8 Si 0.765 3.235 9 H -0.189 1.189 10 H -0.219 1.219 11 H -0.167 1.167 12 N -0.315 5.315 13 C -0.044 4.044 14 C -0.015 4.015 15 C -0.138 4.138 16 C -0.046 4.046 17 C -0.083 4.083 18 C -0.038 4.038 19 N -0.129 5.129 20 C 0.114 3.886 21 F -0.119 7.119 22 C -0.153 4.153 23 H 0.053 0.947 24 H 0.058 0.942 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.159 0.841 28 H 0.107 0.893 29 H 0.069 0.931 30 H 0.177 0.823 31 H 0.187 0.813 32 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 0.997 4.012 17.150 17.641 hybrid contribution 0.377 0.868 -0.978 1.361 sum 1.374 4.880 16.172 16.948 Atomic orbital electron populations 1.21779 0.96865 1.00308 0.99291 1.19446 0.93317 0.92247 0.87472 0.97042 1.21310 1.43187 0.94226 0.97192 0.94657 1.25918 0.94136 1.03537 0.94746 1.70059 1.47920 1.38050 1.02684 0.85833 0.80138 0.80023 0.77486 1.18866 1.21944 1.16667 1.60671 1.33338 1.32865 1.04576 1.21139 1.01763 0.93398 0.88096 1.20010 0.93490 0.94022 0.93967 1.21368 0.94978 0.99756 0.97659 1.21297 1.00353 0.91894 0.91098 1.16063 0.92007 1.05923 0.94284 1.25604 0.92999 0.92620 0.92565 1.81245 1.08963 1.10780 1.11868 1.17713 0.85239 0.95513 0.90178 1.91515 1.68705 1.80673 1.70979 1.21049 1.02472 0.98719 0.93049 0.94701 0.94168 0.92661 0.92551 0.84143 0.89316 0.93140 0.82326 0.81272 0.82913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.71 9.42 71.98 0.68 -4.03 16 2 C 0.18 7.52 2.26 44.17 0.10 7.62 16 3 H 0.01 0.48 4.95 -2.39 -0.01 0.46 16 4 C -0.52 -27.34 8.84 25.60 0.23 -27.11 16 5 H 0.04 2.12 8.06 -2.91 -0.02 2.09 16 6 C 0.01 0.79 5.47 84.65 0.46 1.26 16 7 N -0.95 -56.40 13.96 21.45 0.30 -56.10 16 8 Si 0.94 40.54 26.99 68.60 1.85 42.39 16 9 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 10 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 11 H -0.24 -9.55 6.82 99.48 0.68 -8.87 16 12 N -0.68 -22.94 6.29 -499.47 -3.14 -26.09 16 13 C 0.08 2.04 5.60 85.55 0.48 2.52 16 14 C -0.01 -0.27 5.40 -19.82 -0.11 -0.37 16 15 C -0.12 -1.88 9.67 22.23 0.22 -1.67 16 16 C -0.03 -0.38 9.76 22.53 0.22 -0.16 16 17 C -0.08 -1.50 5.74 -21.29 -0.12 -1.62 16 18 C 0.28 6.40 14.98 88.33 1.32 7.72 16 19 N -0.45 -12.46 18.54 19.01 0.35 -12.11 16 20 C 0.14 2.83 7.28 22.67 0.17 3.00 16 21 F -0.14 -3.33 16.81 44.97 0.76 -2.58 16 22 C -0.13 -2.66 9.66 22.28 0.22 -2.45 16 23 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.05 1.71 7.35 -2.39 -0.02 1.69 16 26 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 27 H 0.34 11.83 8.34 -89.69 -0.75 11.08 16 28 H 0.09 2.00 7.30 -2.38 -0.02 1.99 16 29 H 0.05 1.14 7.99 -2.39 -0.02 1.12 16 30 H 0.16 1.99 8.06 -2.91 -0.02 1.96 16 31 H 0.17 1.52 8.06 -2.91 -0.02 1.49 16 32 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -63.43 290.46 4.35 -59.09 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 0.38 Total: 10.69 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: 3.86 Total: -15.30 kcal Atomic # 7 Polarization: -91.80 SS G_CDS: -2.49 Total: -94.29 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.76 Total: -2.58 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 1.85 Total: 42.39 kcal Total: -63.43 4.35 -59.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404106061.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.130 kcal (2) G-P(sol) polarization free energy of solvation -63.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds