Wall clock time and date at job start Mon Mar 30 2020 05:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34814 * 125.66426 * 2 1 4 4 C 1.40815 * 107.04071 * 179.78365 * 3 2 1 5 5 C 1.35991 * 106.73994 * 0.35695 * 4 3 2 6 6 C 1.47725 * 125.93569 * 179.90635 * 5 4 3 7 7 N 1.31035 * 126.45195 * 359.69282 * 6 5 4 8 8 O 1.21292 * 110.04907 * 180.02562 * 7 6 5 9 9 C 1.33686 * 110.07684 * 359.97438 * 8 7 6 10 10 C 1.50710 * 126.40126 * 179.97438 * 9 8 7 11 11 H 1.09005 * 109.46933 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.47033 * 60.02733 * 10 9 8 13 13 C 1.50696 * 109.47117 * 300.02882 * 10 9 8 14 14 H 1.07999 * 120.00052 * 5.45906 * 13 10 9 15 15 C 1.37874 * 119.99694 * 185.46524 * 13 10 9 16 16 N 1.31509 * 120.00713 * 9.56287 * 15 13 10 17 17 Si 1.86806 * 119.99546 * 189.56829 * 15 13 10 18 18 H 1.48497 * 109.47493 * 84.99207 * 17 15 13 19 19 H 1.48506 * 109.46676 * 204.99198 * 17 15 13 20 20 H 1.48499 * 109.47175 * 324.98874 * 17 15 13 21 21 N 1.30929 * 107.19805 * 0.26505 * 9 8 7 22 22 O 1.34193 * 125.65565 * 180.02562 * 2 1 3 23 23 H 1.09002 * 109.47810 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47125 * 299.96895 * 1 2 3 25 25 H 1.08998 * 109.47655 * 59.96798 * 1 2 3 26 26 H 1.08000 * 126.47452 * 0.02562 * 3 2 1 27 27 H 1.08007 * 126.62956 * 180.26639 * 4 3 2 28 28 H 1.09004 * 109.46756 * 63.51182 * 12 10 9 29 29 H 1.08992 * 109.47071 * 183.50905 * 12 10 9 30 30 H 1.09004 * 109.47192 * 303.51615 * 12 10 9 31 31 H 0.97000 * 120.00683 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2930 1.0953 0.0000 4 6 3.6274 0.6456 0.0051 5 6 3.5827 -0.7136 -0.0002 6 6 4.7497 -1.6194 0.0004 7 7 6.0109 -1.2641 0.0004 8 8 6.7201 -2.2481 0.0005 9 6 5.9697 -3.3546 0.0011 10 6 6.4717 -4.7756 0.0008 11 1 5.6236 -5.4605 0.0010 12 6 7.3219 -5.0164 1.2498 13 6 7.3085 -5.0125 -1.2298 14 1 7.5349 -4.1924 -1.8950 15 6 7.7849 -6.2764 -1.5067 16 7 7.3595 -7.3070 -0.8092 17 14 9.0350 -6.5248 -2.8724 18 1 10.4010 -6.2802 -2.3438 19 1 8.9428 -7.9172 -3.3804 20 1 8.7548 -5.5747 -3.9787 21 7 4.7173 -2.9729 -0.0044 22 8 2.2892 -1.0904 -0.0005 23 1 -0.3635 -1.0276 -0.0005 24 1 -0.3634 0.5134 0.8903 25 1 -0.3634 0.5143 -0.8896 26 1 1.9617 2.1232 0.0004 27 1 4.5148 1.2612 0.0105 28 1 6.7009 -4.9060 2.1388 29 1 7.7360 -6.0241 1.2187 30 1 8.1344 -4.2904 1.2817 31 1 7.6950 -8.1961 -1.0037 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596595943.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:26 Heat of formation + Delta-G solvation = 53.324932 kcal Electronic energy + Delta-G solvation = -17161.000757 eV Core-core repulsion = 14218.655563 eV Total energy + Delta-G solvation = -2942.345194 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -46.54594 -43.73174 -37.20508 -36.61141 -34.49736 -34.05463 -32.83665 -31.51567 -28.24214 -27.34672 -25.41153 -24.80183 -23.25355 -22.13364 -21.30922 -19.40591 -19.00047 -18.12643 -17.48985 -17.37361 -16.88198 -15.90428 -15.67285 -14.83226 -14.19948 -14.06919 -13.98623 -13.87522 -13.85569 -13.60698 -13.23840 -12.98184 -12.84506 -12.78942 -12.55210 -12.38550 -12.23650 -11.95328 -11.59599 -11.11470 -10.87583 -10.58075 -9.36419 -8.26447 -6.39297 -0.34263 0.45200 1.22915 1.33209 1.46018 1.47709 1.56552 1.73085 1.88916 2.38920 2.60975 3.06702 3.19632 3.76972 3.86409 3.92518 4.45787 4.50568 4.56514 4.66213 4.68781 4.73891 4.77469 4.87278 4.94171 4.96465 5.10215 5.37549 5.46416 5.61012 5.71561 5.93679 5.96944 6.62444 7.03573 7.28923 8.82564 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.039854 B = 0.004714 C = 0.004646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.401300 B = 5938.881345 C = 6024.804045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.011 3.989 3 C -0.215 4.215 4 C -0.134 4.134 5 C 0.006 3.994 6 C 0.230 3.770 7 N -0.387 5.387 8 O 0.072 5.928 9 C 0.248 3.752 10 C 0.124 3.876 11 H 0.058 0.942 12 C -0.123 4.123 13 C -0.548 4.548 14 H 0.055 0.945 15 C 0.034 3.966 16 N -0.904 5.904 17 Si 0.963 3.037 18 H -0.265 1.265 19 H -0.279 1.279 20 H -0.275 1.275 21 N -0.523 5.523 22 O -0.180 6.180 23 H 0.076 0.924 24 H 0.116 0.884 25 H 0.114 0.886 26 H 0.196 0.804 27 H 0.168 0.832 28 H 0.040 0.960 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.825 13.770 2.335 17.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.041 4.041 3 C -0.233 4.233 4 C -0.156 4.156 5 C -0.044 4.044 6 C -0.039 4.039 7 N -0.100 5.100 8 O 0.017 5.983 9 C 0.029 3.971 10 C 0.104 3.896 11 H 0.076 0.924 12 C -0.181 4.181 13 C -0.586 4.586 14 H 0.073 0.927 15 C -0.168 4.168 16 N -0.541 5.541 17 Si 0.787 3.213 18 H -0.190 1.190 19 H -0.204 1.204 20 H -0.200 1.200 21 N -0.257 5.257 22 O -0.076 6.076 23 H 0.095 0.905 24 H 0.134 0.866 25 H 0.133 0.867 26 H 0.213 0.787 27 H 0.186 0.814 28 H 0.059 0.941 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.074 13.998 2.359 17.407 hybrid contribution 0.923 -0.613 -0.685 1.303 sum -9.151 13.385 1.674 16.300 Atomic orbital electron populations 1.20672 0.81032 1.05170 1.06219 1.23814 0.96099 0.83146 1.01048 1.21922 0.90322 1.01394 1.09658 1.22127 1.00685 0.91139 1.01655 1.18098 0.79979 0.90884 1.15483 1.22713 0.90942 0.88158 1.02102 1.74832 1.02423 1.09114 1.23643 1.85241 1.35371 1.11524 1.66181 1.29911 0.83654 0.94611 0.88903 1.17753 0.96893 0.77483 0.97480 0.92439 1.21664 0.98987 1.03047 0.94414 1.21014 1.33859 0.95503 1.08262 0.92684 1.25579 0.97592 0.94843 0.98753 1.70015 1.42360 0.99671 1.42059 0.85500 0.79581 0.77362 0.78860 1.19035 1.20380 1.19960 1.72236 1.20608 1.08719 1.24102 1.84052 1.15168 1.36810 1.71610 0.90496 0.86595 0.86722 0.78651 0.81427 0.94064 0.91075 0.92871 0.91893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 10.41 71.23 0.74 -0.17 16 2 C 0.01 0.25 7.31 24.90 0.18 0.44 16 3 C -0.21 -4.53 10.78 22.11 0.24 -4.29 16 4 C -0.13 -3.81 10.82 22.38 0.24 -3.56 16 5 C 0.01 0.23 7.26 24.26 0.18 0.41 16 6 C 0.23 10.06 8.06 136.95 1.10 11.16 16 7 N -0.39 -16.76 12.18 -58.77 -0.72 -17.48 16 8 O 0.07 3.30 11.29 74.45 0.84 4.14 16 9 C 0.25 11.88 6.94 88.36 0.61 12.49 16 10 C 0.12 6.25 2.63 -12.28 -0.03 6.21 16 11 H 0.06 3.15 8.09 -2.38 -0.02 3.13 16 12 C -0.12 -5.47 9.05 71.98 0.65 -4.82 16 13 C -0.55 -29.32 8.46 25.60 0.22 -29.10 16 14 H 0.05 2.97 7.76 -2.91 -0.02 2.95 16 15 C 0.03 1.80 5.17 84.65 0.44 2.24 16 16 N -0.90 -48.85 12.16 21.45 0.26 -48.59 16 17 Si 0.96 41.53 29.55 68.60 2.03 43.56 16 18 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 19 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 21 N -0.52 -25.24 11.58 -302.25 -3.50 -28.74 16 22 O -0.18 -6.20 10.67 -5.63 -0.06 -6.26 16 23 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.12 0.83 8.14 -2.38 -0.02 0.81 16 25 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.20 2.40 8.06 -2.91 -0.02 2.38 16 27 H 0.17 4.24 8.06 -2.91 -0.02 4.22 16 28 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 29 H 0.07 3.38 6.83 -2.39 -0.02 3.36 16 30 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.27 13.81 8.31 -92.71 -0.77 13.04 16 Total: -1.00 -63.79 283.48 4.57 -59.22 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: 1.15 Total: 3.14 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: 4.57 Total: -9.00 kcal Atomic # 7 Polarization: -90.85 SS G_CDS: -3.96 Total: -94.80 kcal Atomic # 8 Polarization: -2.89 SS G_CDS: 0.78 Total: -2.11 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -63.79 4.57 -59.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596595943.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.542 kcal (2) G-P(sol) polarization free energy of solvation -63.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds