Wall clock time and date at job start Mon Mar 30 2020 05:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34825 * 125.66027 * 2 1 4 4 C 1.40825 * 107.03581 * 179.76100 * 3 2 1 5 5 C 1.35980 * 106.74262 * 0.35620 * 4 3 2 6 6 C 1.47736 * 125.93865 * 179.90606 * 5 4 3 7 7 N 1.31039 * 126.44610 * 359.40551 * 6 5 4 8 8 O 1.21280 * 110.04243 * 179.80585 * 7 6 5 9 9 C 1.33687 * 110.08305 * 0.46156 * 8 7 6 10 10 C 1.50703 * 126.40353 * 179.71015 * 9 8 7 11 11 H 1.09008 * 109.46770 * 180.02562 * 10 9 8 12 12 C 1.52995 * 109.47367 * 300.00551 * 10 9 8 13 13 C 1.50702 * 109.47035 * 60.00545 * 10 9 8 14 14 H 1.07997 * 119.99836 * 0.02562 * 13 10 9 15 15 C 1.37874 * 119.99977 * 179.97438 * 13 10 9 16 16 N 1.31519 * 120.00214 * 0.02562 * 15 13 10 17 17 Si 1.86801 * 120.00124 * 180.02562 * 15 13 10 18 18 H 1.48495 * 109.47053 * 59.99880 * 17 15 13 19 19 H 1.48495 * 109.47246 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46828 * 300.00240 * 17 15 13 21 21 N 1.30920 * 107.19405 * 359.71447 * 9 8 7 22 22 O 1.34193 * 125.66190 * 179.97438 * 2 1 3 23 23 H 1.08997 * 109.47424 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46759 * 299.99569 * 1 2 3 25 25 H 1.09000 * 109.47156 * 59.99629 * 1 2 3 26 26 H 1.07990 * 126.47809 * 359.97438 * 3 2 1 27 27 H 1.07999 * 126.62550 * 180.26628 * 4 3 2 28 28 H 1.08998 * 109.47047 * 300.00011 * 12 10 9 29 29 H 1.08996 * 109.47019 * 59.99876 * 12 10 9 30 30 H 1.08998 * 109.47292 * 180.02562 * 12 10 9 31 31 H 0.96994 * 120.00056 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2929 1.0954 0.0000 4 6 3.6274 0.6457 0.0056 5 6 3.5828 -0.7134 0.0007 6 6 4.7498 -1.6192 0.0019 7 7 6.0111 -1.2639 -0.0031 8 8 6.7202 -2.2478 0.0035 9 6 5.9699 -3.3543 0.0034 10 6 6.4719 -4.7753 0.0043 11 1 5.6239 -5.4602 0.0036 12 6 7.3228 -5.0164 -1.2441 13 6 7.3082 -5.0118 1.2355 14 1 7.4605 -4.2132 1.9464 15 6 7.8779 -6.2480 1.4548 16 7 7.6920 -7.2207 0.5894 17 14 8.9139 -6.5415 2.9813 18 1 8.0878 -6.3072 4.1928 19 1 9.4087 -7.9416 2.9821 20 1 10.0694 -5.6086 2.9821 21 7 4.7176 -2.9728 0.0024 22 8 2.2893 -1.0903 0.0005 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.9617 2.1233 -0.0004 27 1 4.5148 1.2613 0.0112 28 1 6.7179 -4.8453 -2.1346 29 1 8.1707 -4.3315 -1.2438 30 1 7.6855 -6.0443 -1.2437 31 1 8.0925 -8.0905 0.7439 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596595944.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:28 Heat of formation + Delta-G solvation = 72.893489 kcal Electronic energy + Delta-G solvation = -17166.748728 eV Core-core repulsion = 14225.252090 eV Total energy + Delta-G solvation = -2941.496637 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.85542 -42.58440 -35.43630 -34.83635 -33.32000 -32.52026 -31.48345 -29.73971 -27.12259 -25.41482 -23.61179 -23.35018 -21.83947 -20.83402 -19.90216 -17.74095 -17.38308 -16.28655 -16.13324 -15.93873 -15.04222 -14.75743 -13.87198 -13.33982 -13.24011 -13.09439 -12.91825 -12.84159 -12.02812 -11.98793 -11.77342 -11.46862 -11.15314 -11.02715 -10.73693 -10.52848 -10.37040 -10.16533 -9.99172 -9.69406 -9.09935 -8.59426 -8.16585 -6.24221 -4.34156 1.07804 2.03427 2.41776 2.52540 3.20773 3.25172 3.29167 3.33293 3.67064 4.00913 4.28800 4.58222 4.82209 4.91422 5.09265 5.22539 5.24134 5.36713 5.49480 5.79908 5.84757 5.95985 6.33389 6.38496 6.49711 6.59407 6.77503 6.81732 7.06471 7.34362 7.59141 7.76728 7.96418 8.64329 8.76652 9.32351 10.81966 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.039825 B = 0.004694 C = 0.004657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.912371 B = 5963.745222 C = 6010.640085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.000 4.000 3 C -0.215 4.215 4 C -0.158 4.158 5 C 0.069 3.931 6 C 0.224 3.776 7 N -0.382 5.382 8 O 0.083 5.917 9 C 0.252 3.748 10 C 0.124 3.876 11 H 0.078 0.922 12 C -0.139 4.139 13 C -0.526 4.526 14 H 0.063 0.937 15 C 0.072 3.928 16 N -0.884 5.884 17 Si 0.905 3.095 18 H -0.275 1.275 19 H -0.284 1.284 20 H -0.273 1.273 21 N -0.501 5.501 22 O -0.152 6.152 23 H 0.078 0.922 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.154 0.846 27 H 0.157 0.843 28 H 0.018 0.982 29 H 0.041 0.959 30 H 0.102 0.898 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.359 11.615 -2.042 15.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.052 4.052 3 C -0.234 4.234 4 C -0.180 4.180 5 C 0.018 3.982 6 C -0.046 4.046 7 N -0.093 5.093 8 O 0.023 5.977 9 C 0.034 3.966 10 C 0.104 3.896 11 H 0.095 0.905 12 C -0.198 4.198 13 C -0.565 4.565 14 H 0.081 0.919 15 C -0.132 4.132 16 N -0.521 5.521 17 Si 0.732 3.268 18 H -0.200 1.200 19 H -0.209 1.209 20 H -0.198 1.198 21 N -0.234 5.234 22 O -0.046 6.046 23 H 0.098 0.902 24 H 0.106 0.894 25 H 0.106 0.894 26 H 0.172 0.828 27 H 0.174 0.826 28 H 0.037 0.963 29 H 0.060 0.940 30 H 0.121 0.879 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.604 11.856 -2.090 15.400 hybrid contribution 0.698 -0.132 0.842 1.101 sum -8.906 11.723 -1.248 14.775 Atomic orbital electron populations 1.20349 0.84634 1.04418 1.03636 1.22667 0.94206 0.83969 1.04344 1.21472 0.92100 0.99593 1.10250 1.21746 0.98716 0.92423 1.05105 1.18075 0.80043 0.90257 1.09865 1.22199 0.89853 0.88528 1.03979 1.74899 1.02365 1.09761 1.22267 1.85274 1.35179 1.11624 1.65592 1.30218 0.83308 0.94744 0.88316 1.17916 0.97467 0.77019 0.97211 0.90454 1.21869 0.98516 1.05416 0.93972 1.20825 1.32157 0.98064 1.05428 0.91897 1.24870 0.95908 0.95403 0.97013 1.69840 1.43924 1.03079 1.35233 0.86427 0.80431 0.77382 0.82553 1.20017 1.20940 1.19830 1.72246 1.20495 1.07236 1.23419 1.84070 1.15185 1.34591 1.70774 0.90250 0.89415 0.89428 0.82800 0.82580 0.96319 0.94030 0.87921 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.59 10.41 36.00 0.37 -0.21 16 2 C 0.00 0.01 7.31 -35.52 -0.26 -0.25 16 3 C -0.22 -2.64 10.78 -39.81 -0.43 -3.07 16 4 C -0.16 -2.38 10.82 -39.41 -0.43 -2.81 16 5 C 0.07 1.28 7.26 -36.51 -0.26 1.01 16 6 C 0.22 4.79 8.06 -156.04 -1.26 3.53 16 7 N -0.38 -8.17 12.18 30.98 0.38 -7.79 16 8 O 0.08 1.86 11.29 17.99 0.20 2.06 16 9 C 0.25 5.87 6.93 -12.98 -0.09 5.78 16 10 C 0.12 3.03 2.77 -92.92 -0.26 2.77 16 11 H 0.08 2.00 8.14 -51.92 -0.42 1.57 16 12 C -0.14 -3.14 8.95 37.15 0.33 -2.80 16 13 C -0.53 -13.77 8.55 -34.44 -0.29 -14.07 16 14 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 15 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 16 N -0.88 -23.36 11.32 55.43 0.63 -22.73 16 17 Si 0.91 20.27 29.54 -169.99 -5.02 15.25 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 20 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 21 N -0.50 -11.67 11.58 -9.88 -0.11 -11.78 16 22 O -0.15 -2.63 10.67 4.82 0.05 -2.58 16 23 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 27 H 0.16 2.13 8.06 -52.49 -0.42 1.71 16 28 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.10 2.48 6.07 -51.93 -0.32 2.16 16 31 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 LS Contribution 282.14 15.07 4.25 4.25 Total: -1.00 -28.59 282.14 -5.53 -34.12 By element: Atomic # 1 Polarization: 0.81 SS G_CDS: -3.24 Total: -2.43 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -2.67 Total: -8.36 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: 0.89 Total: -42.31 kcal Atomic # 8 Polarization: -0.78 SS G_CDS: 0.25 Total: -0.52 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -28.59 -5.53 -34.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596595944.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.010 kcal (2) G-P(sol) polarization free energy of solvation -28.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds