Wall clock time and date at job start Mon Mar 30 2020 05:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34825 * 125.66027 * 2 1 4 4 C 1.40825 * 107.03581 * 179.76100 * 3 2 1 5 5 C 1.35980 * 106.74262 * 0.35620 * 4 3 2 6 6 C 1.47736 * 125.93865 * 179.90606 * 5 4 3 7 7 N 1.31039 * 126.44610 * 359.40551 * 6 5 4 8 8 O 1.21280 * 110.04243 * 179.80585 * 7 6 5 9 9 C 1.33687 * 110.08305 * 0.46156 * 8 7 6 10 10 C 1.50703 * 126.40353 * 179.71015 * 9 8 7 11 11 H 1.09008 * 109.46770 * 180.02562 * 10 9 8 12 12 C 1.52995 * 109.47367 * 300.00551 * 10 9 8 13 13 C 1.50702 * 109.47035 * 60.00545 * 10 9 8 14 14 H 1.07997 * 119.99836 * 0.02562 * 13 10 9 15 15 C 1.37874 * 119.99977 * 179.97438 * 13 10 9 16 16 N 1.31519 * 120.00214 * 0.02562 * 15 13 10 17 17 Si 1.86801 * 120.00124 * 180.02562 * 15 13 10 18 18 H 1.48495 * 109.47053 * 59.99880 * 17 15 13 19 19 H 1.48495 * 109.47246 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46828 * 300.00240 * 17 15 13 21 21 N 1.30920 * 107.19405 * 359.71447 * 9 8 7 22 22 O 1.34193 * 125.66190 * 179.97438 * 2 1 3 23 23 H 1.08997 * 109.47424 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46759 * 299.99569 * 1 2 3 25 25 H 1.09000 * 109.47156 * 59.99629 * 1 2 3 26 26 H 1.07990 * 126.47809 * 359.97438 * 3 2 1 27 27 H 1.07999 * 126.62550 * 180.26628 * 4 3 2 28 28 H 1.08998 * 109.47047 * 300.00011 * 12 10 9 29 29 H 1.08996 * 109.47019 * 59.99876 * 12 10 9 30 30 H 1.08998 * 109.47292 * 180.02562 * 12 10 9 31 31 H 0.96994 * 120.00056 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2929 1.0954 0.0000 4 6 3.6274 0.6457 0.0056 5 6 3.5828 -0.7134 0.0007 6 6 4.7498 -1.6192 0.0019 7 7 6.0111 -1.2639 -0.0031 8 8 6.7202 -2.2478 0.0035 9 6 5.9699 -3.3543 0.0034 10 6 6.4719 -4.7753 0.0043 11 1 5.6239 -5.4602 0.0036 12 6 7.3228 -5.0164 -1.2441 13 6 7.3082 -5.0118 1.2355 14 1 7.4605 -4.2132 1.9464 15 6 7.8779 -6.2480 1.4548 16 7 7.6920 -7.2207 0.5894 17 14 8.9139 -6.5415 2.9813 18 1 8.0878 -6.3072 4.1928 19 1 9.4087 -7.9416 2.9821 20 1 10.0694 -5.6086 2.9821 21 7 4.7176 -2.9728 0.0024 22 8 2.2893 -1.0903 0.0005 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.9617 2.1233 -0.0004 27 1 4.5148 1.2613 0.0112 28 1 6.7179 -4.8453 -2.1346 29 1 8.1707 -4.3315 -1.2438 30 1 7.6855 -6.0443 -1.2437 31 1 8.0925 -8.0905 0.7439 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596595944.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:28 Heat of formation + Delta-G solvation = 54.976098 kcal Electronic energy + Delta-G solvation = -17167.525684 eV Core-core repulsion = 14225.252090 eV Total energy + Delta-G solvation = -2942.273594 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -46.55113 -43.73284 -37.22026 -36.63031 -34.50130 -34.05157 -32.80976 -31.46558 -28.24268 -27.38619 -25.38101 -24.80051 -23.24183 -22.13228 -21.30796 -19.41018 -19.00248 -18.11527 -17.48682 -17.37519 -16.89644 -15.90460 -15.70782 -14.84579 -14.19944 -14.06412 -13.98754 -13.87635 -13.79546 -13.57631 -13.19355 -12.94413 -12.86731 -12.82341 -12.55818 -12.32420 -12.22120 -11.98622 -11.59259 -11.10915 -10.87398 -10.57891 -9.36665 -8.22685 -6.39989 -0.34503 0.44838 1.22691 1.32733 1.47190 1.47652 1.55936 1.72816 1.88820 2.38684 2.60587 3.07684 3.19923 3.76830 3.86208 3.92811 4.46230 4.50292 4.57057 4.66275 4.69518 4.73891 4.79951 4.88057 4.94821 4.97235 5.10120 5.38412 5.46245 5.62684 5.80774 5.94288 6.01593 6.61250 7.03186 7.29488 8.83058 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.039825 B = 0.004694 C = 0.004657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.912371 B = 5963.745222 C = 6010.640085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.011 3.989 3 C -0.215 4.215 4 C -0.134 4.134 5 C 0.006 3.994 6 C 0.230 3.770 7 N -0.387 5.387 8 O 0.072 5.928 9 C 0.247 3.753 10 C 0.126 3.874 11 H 0.056 0.944 12 C -0.128 4.128 13 C -0.547 4.547 14 H 0.054 0.946 15 C 0.033 3.967 16 N -0.903 5.903 17 Si 0.964 3.036 18 H -0.276 1.276 19 H -0.275 1.275 20 H -0.268 1.268 21 N -0.522 5.522 22 O -0.180 6.180 23 H 0.076 0.924 24 H 0.115 0.885 25 H 0.116 0.884 26 H 0.196 0.804 27 H 0.168 0.832 28 H 0.035 0.965 29 H 0.046 0.954 30 H 0.087 0.913 31 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.578 13.450 -1.717 17.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.041 4.041 3 C -0.233 4.233 4 C -0.156 4.156 5 C -0.044 4.044 6 C -0.039 4.039 7 N -0.101 5.101 8 O 0.016 5.984 9 C 0.029 3.971 10 C 0.105 3.895 11 H 0.073 0.927 12 C -0.187 4.187 13 C -0.586 4.586 14 H 0.072 0.928 15 C -0.169 4.169 16 N -0.540 5.540 17 Si 0.789 3.211 18 H -0.201 1.201 19 H -0.200 1.200 20 H -0.193 1.193 21 N -0.256 5.256 22 O -0.076 6.076 23 H 0.095 0.905 24 H 0.133 0.867 25 H 0.134 0.866 26 H 0.213 0.787 27 H 0.185 0.815 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.106 0.894 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.793 13.683 -1.774 17.517 hybrid contribution 0.871 -0.572 0.720 1.267 sum -9.922 13.111 -1.054 16.476 Atomic orbital electron populations 1.20672 0.81012 1.05181 1.06219 1.23818 0.96098 0.83140 1.01021 1.21925 0.90311 1.01400 1.09669 1.22126 1.00689 0.91154 1.01644 1.18090 0.79976 0.90866 1.15499 1.22715 0.90936 0.88172 1.02072 1.74838 1.02439 1.09130 1.23653 1.85243 1.35397 1.11545 1.66167 1.29923 0.83628 0.94661 0.88888 1.17746 0.96669 0.77412 0.97636 0.92659 1.21718 0.98589 1.04451 0.93892 1.21005 1.33078 0.98337 1.06139 0.92774 1.25573 0.96708 0.95001 0.99584 1.69928 1.44304 1.03379 1.36432 0.85507 0.78923 0.77636 0.79049 1.20101 1.19989 1.19287 1.72225 1.20542 1.08716 1.24145 1.84051 1.15146 1.36802 1.71615 0.90474 0.86716 0.86603 0.78658 0.81459 0.94607 0.93526 0.89420 0.91870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 10.41 71.23 0.74 -0.16 16 2 C 0.01 0.26 7.31 24.90 0.18 0.44 16 3 C -0.21 -4.52 10.78 22.12 0.24 -4.28 16 4 C -0.13 -3.81 10.82 22.38 0.24 -3.57 16 5 C 0.01 0.24 7.26 24.26 0.18 0.41 16 6 C 0.23 10.07 8.06 136.96 1.10 11.18 16 7 N -0.39 -16.87 12.18 -58.81 -0.72 -17.58 16 8 O 0.07 3.31 11.29 74.46 0.84 4.15 16 9 C 0.25 11.91 6.93 88.35 0.61 12.52 16 10 C 0.13 6.34 2.77 -12.29 -0.03 6.31 16 11 H 0.06 2.99 8.14 -2.38 -0.02 2.97 16 12 C -0.13 -5.88 8.95 71.98 0.64 -5.23 16 13 C -0.55 -29.30 8.55 25.60 0.22 -29.08 16 14 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 15 C 0.03 1.72 5.30 84.65 0.45 2.17 16 16 N -0.90 -48.18 11.32 21.45 0.24 -47.94 16 17 Si 0.96 41.52 29.54 68.60 2.03 43.54 16 18 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 19 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16 20 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 21 N -0.52 -25.15 11.58 -302.31 -3.50 -28.65 16 22 O -0.18 -6.16 10.67 -5.66 -0.06 -6.22 16 23 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.20 2.40 8.06 -2.92 -0.02 2.37 16 27 H 0.17 4.25 8.06 -2.91 -0.02 4.22 16 28 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.09 4.31 6.07 -2.39 -0.01 4.29 16 31 H 0.27 13.68 8.31 -92.71 -0.77 12.91 16 Total: -1.00 -63.15 282.14 4.56 -58.59 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: 1.15 Total: 3.40 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: 4.58 Total: -9.29 kcal Atomic # 7 Polarization: -90.20 SS G_CDS: -3.97 Total: -94.18 kcal Atomic # 8 Polarization: -2.85 SS G_CDS: 0.78 Total: -2.07 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.54 kcal Total: -63.15 4.56 -58.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596595944.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.565 kcal (2) G-P(sol) polarization free energy of solvation -63.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds