Wall clock time and date at job start Mon Mar 30 2020 05:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.33973 * 125.77279 * 2 1 4 4 C 1.34167 * 110.77484 * 180.26199 * 3 2 1 5 5 C 1.34335 * 109.00441 * 359.76646 * 4 3 2 6 6 C 1.35883 * 125.76264 * 179.85632 * 2 1 3 7 7 C 1.48306 * 127.12793 * 0.02562 * 6 2 1 8 8 N 1.30832 * 126.42100 * 359.67904 * 7 6 2 9 9 O 1.21296 * 110.08326 * 180.02562 * 8 7 6 10 10 C 1.33669 * 110.03980 * 0.02562 * 9 8 7 11 11 C 1.50693 * 126.42950 * 179.97438 * 10 9 8 12 12 H 1.08999 * 109.47223 * 180.02562 * 11 10 9 13 13 C 1.53007 * 109.46956 * 60.02485 * 11 10 9 14 14 C 1.50697 * 109.47419 * 300.02647 * 11 10 9 15 15 H 1.07998 * 120.00110 * 35.00697 * 14 11 10 16 16 C 1.37877 * 119.99990 * 215.01941 * 14 11 10 17 17 N 1.31516 * 120.00073 * 184.91539 * 16 14 11 18 18 Si 1.86803 * 120.00207 * 4.90470 * 16 14 11 19 19 H 1.48500 * 109.46847 * 84.84016 * 18 16 14 20 20 H 1.48495 * 109.47377 * 204.83967 * 18 16 14 21 21 H 1.48496 * 109.46981 * 324.84053 * 18 16 14 22 22 N 1.30974 * 107.13977 * 359.97438 * 10 9 8 23 23 H 1.08995 * 109.47708 * 270.14214 * 1 2 3 24 24 H 1.09002 * 109.47198 * 30.14238 * 1 2 3 25 25 H 1.08995 * 109.47632 * 150.13897 * 1 2 3 26 26 H 1.08004 * 125.49619 * 179.76313 * 4 3 2 27 27 H 1.08006 * 126.99229 * 179.97438 * 5 4 3 28 28 H 1.08997 * 109.47547 * 55.02610 * 13 11 10 29 29 H 1.09001 * 109.46995 * 175.02439 * 13 11 10 30 30 H 1.09006 * 109.46742 * 295.01883 * 13 11 10 31 31 H 0.97001 * 120.00068 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2901 1.0870 0.0000 4 6 3.5861 0.7398 -0.0057 5 6 3.6800 -0.6003 -0.0045 6 6 2.3011 -1.1026 0.0028 7 6 1.8648 -2.5200 0.0058 8 7 0.6301 -2.9527 0.0122 9 8 0.6138 -4.1655 0.0135 10 6 1.8632 -4.6405 0.0085 11 6 2.2689 -6.0918 0.0088 12 1 3.3564 -6.1650 0.0044 13 6 1.7064 -6.7788 -1.2373 14 6 1.7251 -6.7652 1.2423 15 1 0.7651 -6.4705 1.6397 16 6 2.4532 -7.7575 1.8638 17 7 1.9380 -8.4119 2.8816 18 14 4.1715 -8.1727 1.2600 19 1 5.1528 -7.2517 1.8879 20 1 4.5009 -9.5729 1.6285 21 1 4.2269 -8.0233 -0.2164 22 7 2.6687 -3.6077 0.0034 23 1 -0.3634 0.0025 1.0276 24 1 -0.3634 0.8887 -0.5160 25 1 -0.3634 -0.8912 -0.5116 26 1 4.4194 1.4269 -0.0106 27 1 4.5859 -1.1883 -0.0084 28 1 2.0286 -6.2380 -2.1271 29 1 2.0724 -7.8045 -1.2832 30 1 0.6174 -6.7834 -1.1892 31 1 2.4501 -9.1102 3.3186 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596597903.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:30 Heat of formation + Delta-G solvation = 51.175455 kcal Electronic energy + Delta-G solvation = -17416.314100 eV Core-core repulsion = 14473.875698 eV Total energy + Delta-G solvation = -2942.438402 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -46.38498 -43.51264 -37.17337 -36.67459 -34.54497 -33.59929 -32.95890 -31.66419 -27.98415 -27.37674 -25.45252 -25.18499 -22.93413 -22.30144 -20.41908 -19.34153 -18.79922 -18.59781 -17.70548 -17.26095 -16.78272 -15.89366 -15.74113 -14.68336 -14.56290 -14.19254 -14.05230 -13.95911 -13.81272 -13.64331 -13.49782 -13.10404 -12.92136 -12.76669 -12.67162 -12.29274 -11.96538 -11.80906 -11.54598 -11.15264 -10.81889 -10.40733 -9.48605 -8.38209 -6.49473 -0.06595 0.57278 1.06735 1.37381 1.40800 1.49242 1.79822 1.91169 2.01105 2.30075 2.63227 2.96104 3.02286 3.60854 3.82296 4.21204 4.28719 4.40227 4.52015 4.54804 4.61620 4.66727 4.74673 4.83436 4.90765 4.94000 5.10965 5.20875 5.33049 5.38744 5.49556 5.99308 6.11401 6.56833 7.16307 7.18658 8.77184 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.034252 B = 0.005660 C = 0.005307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.282576 B = 4945.990886 C = 5275.103758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.049 3.951 3 O -0.173 6.173 4 C -0.014 4.014 5 C -0.202 4.202 6 C -0.163 4.163 7 C 0.237 3.763 8 N -0.406 5.406 9 O 0.057 5.943 10 C 0.239 3.761 11 C 0.095 3.905 12 H 0.080 0.920 13 C -0.135 4.135 14 C -0.530 4.530 15 H 0.040 0.960 16 C 0.031 3.969 17 N -0.931 5.931 18 Si 0.933 3.067 19 H -0.271 1.271 20 H -0.277 1.277 21 H -0.229 1.229 22 N -0.520 5.520 23 H 0.094 0.906 24 H 0.110 0.890 25 H 0.084 0.916 26 H 0.260 0.740 27 H 0.160 0.840 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.193 15.703 -8.448 18.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.006 4.006 3 O -0.069 6.069 4 C -0.079 4.079 5 C -0.222 4.222 6 C -0.166 4.166 7 C -0.033 4.033 8 N -0.122 5.122 9 O 0.005 5.995 10 C 0.020 3.980 11 C 0.074 3.926 12 H 0.098 0.902 13 C -0.193 4.193 14 C -0.569 4.569 15 H 0.059 0.941 16 C -0.170 4.170 17 N -0.568 5.568 18 Si 0.755 3.245 19 H -0.196 1.196 20 H -0.203 1.203 21 H -0.151 1.151 22 N -0.254 5.254 23 H 0.113 0.887 24 H 0.128 0.872 25 H 0.102 0.898 26 H 0.276 0.724 27 H 0.178 0.822 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.793 16.528 -8.315 18.711 hybrid contribution 0.685 -1.062 0.479 1.351 sum 3.478 15.466 -7.836 17.683 Atomic orbital electron populations 1.20572 0.82651 1.05344 1.04911 1.22853 0.94911 0.82859 0.99966 1.83859 1.17755 1.33585 1.71662 1.24730 0.83812 0.95718 1.03603 1.22926 0.95656 0.95436 1.08149 1.18708 0.95599 0.86265 1.16026 1.23326 0.85129 0.94974 0.99843 1.74753 1.21235 0.91485 1.24686 1.85202 1.32557 1.15128 1.66604 1.29765 0.78621 1.00003 0.89647 1.18149 0.98451 0.78707 0.97332 0.90217 1.21968 1.01671 1.00970 0.94737 1.20813 1.05453 1.20024 1.10564 0.94133 1.25828 1.02219 0.94811 0.94132 1.69999 1.39765 1.23833 1.23225 0.85936 0.79040 0.77982 0.81513 1.19591 1.20255 1.15124 1.72031 1.31961 0.97216 1.24193 0.88743 0.87152 0.89784 0.72425 0.82228 0.92390 0.90822 0.92365 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.76 10.01 71.23 0.71 -1.05 16 2 C 0.05 1.34 7.36 25.14 0.19 1.53 16 3 O -0.17 -3.98 10.54 1.97 0.02 -3.96 16 4 C -0.01 -0.26 12.04 66.93 0.81 0.55 16 5 C -0.20 -5.50 11.15 23.61 0.26 -5.24 16 6 C -0.16 -5.52 6.33 -18.92 -0.12 -5.63 16 7 C 0.24 9.79 8.02 137.23 1.10 10.89 16 8 N -0.41 -17.05 10.38 -58.99 -0.61 -17.66 16 9 O 0.06 2.55 11.29 74.60 0.84 3.40 16 10 C 0.24 10.88 6.98 88.35 0.62 11.50 16 11 C 0.09 4.29 2.43 -12.29 -0.03 4.26 16 12 H 0.08 3.52 5.29 -2.39 -0.01 3.51 16 13 C -0.14 -5.11 9.16 71.98 0.66 -4.45 16 14 C -0.53 -29.02 8.84 25.60 0.23 -28.79 16 15 H 0.04 2.50 8.06 -2.91 -0.02 2.48 16 16 C 0.03 1.68 5.47 84.65 0.46 2.14 16 17 N -0.93 -55.27 13.96 21.45 0.30 -54.97 16 18 Si 0.93 40.64 26.99 68.60 1.85 42.50 16 19 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 20 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 21 H -0.23 -8.76 6.82 99.48 0.68 -8.08 16 22 N -0.52 -23.24 11.58 -302.38 -3.50 -26.74 16 23 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.08 2.20 6.64 -2.39 -0.02 2.19 16 26 H 0.26 2.01 8.06 -2.91 -0.02 1.99 16 27 H 0.16 4.18 8.06 -2.91 -0.02 4.16 16 28 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 30 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 31 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -67.92 278.69 4.91 -63.01 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: 1.13 Total: 8.73 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: 4.88 Total: -14.30 kcal Atomic # 7 Polarization: -95.56 SS G_CDS: -3.81 Total: -99.37 kcal Atomic # 8 Polarization: -1.42 SS G_CDS: 0.86 Total: -0.56 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 1.85 Total: 42.50 kcal Total: -67.92 4.91 -63.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596597903.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.186 kcal (2) G-P(sol) polarization free energy of solvation -67.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds