Wall clock time and date at job start Mon Mar 30 2020 05:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.33975 * 125.77096 * 2 1 4 4 C 1.34174 * 110.77512 * 179.70743 * 3 2 1 5 5 C 1.34329 * 109.00532 * 0.44833 * 4 3 2 6 6 C 1.35879 * 125.76763 * 179.97438 * 2 1 3 7 7 C 1.48311 * 127.12816 * 0.02907 * 6 2 1 8 8 N 1.30838 * 126.41981 * 359.70558 * 7 6 2 9 9 O 1.21287 * 110.08382 * 179.84817 * 8 7 6 10 10 C 1.33658 * 110.03868 * 0.42467 * 9 8 7 11 11 C 1.50706 * 126.42877 * 179.77182 * 10 9 8 12 12 H 1.09004 * 109.46692 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47246 * 299.95707 * 11 10 9 14 14 C 1.50700 * 109.47248 * 59.96081 * 11 10 9 15 15 H 1.08001 * 119.99499 * 0.02562 * 14 11 10 16 16 C 1.37869 * 120.00308 * 179.97438 * 14 11 10 17 17 N 1.31508 * 120.00261 * 179.97438 * 16 14 11 18 18 Si 1.86806 * 119.99959 * 0.02562 * 16 14 11 19 19 H 1.48495 * 109.47048 * 89.99823 * 18 16 14 20 20 H 1.48494 * 109.46946 * 209.99902 * 18 16 14 21 21 H 1.48495 * 109.46922 * 330.00054 * 18 16 14 22 22 N 1.30973 * 107.14288 * 359.73952 * 10 9 8 23 23 H 1.09000 * 109.47259 * 270.02586 * 1 2 3 24 24 H 1.08992 * 109.47086 * 30.02798 * 1 2 3 25 25 H 1.08996 * 109.47033 * 150.02906 * 1 2 3 26 26 H 1.08002 * 125.49571 * 180.28446 * 4 3 2 27 27 H 1.08002 * 126.99987 * 179.84026 * 5 4 3 28 28 H 1.08999 * 109.46831 * 60.00063 * 13 11 10 29 29 H 1.08998 * 109.47173 * 180.02562 * 13 11 10 30 30 H 1.08999 * 109.47157 * 300.00195 * 13 11 10 31 31 H 0.97006 * 120.00256 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2901 1.0870 0.0000 4 6 3.5862 0.7399 0.0064 5 6 3.6801 -0.6001 0.0009 6 6 2.3012 -1.1025 0.0005 7 6 1.8650 -2.5200 0.0005 8 7 0.6303 -2.9528 0.0055 9 8 0.6140 -4.1656 0.0009 10 6 1.8634 -4.6404 0.0017 11 6 2.2692 -6.0918 0.0018 12 1 3.3568 -6.1649 0.0021 13 6 1.7121 -6.7770 1.2513 14 6 1.7203 -6.7670 -1.2285 15 1 1.1363 -6.2016 -1.9396 16 6 1.9644 -8.1063 -1.4468 17 7 1.4849 -8.6957 -2.5202 18 14 2.9750 -9.0841 -0.2170 19 1 2.0751 -9.6700 0.8086 20 1 3.6958 -10.1733 -0.9236 21 1 3.9574 -8.1861 0.4414 22 7 2.6689 -3.6076 0.0015 23 1 -0.3634 0.0005 1.0277 24 1 -0.3633 0.8897 -0.5142 25 1 -0.3633 -0.8902 -0.5134 26 1 4.4194 1.4270 0.0122 27 1 4.5860 -1.1882 0.0013 28 1 0.6245 -6.7038 1.2513 29 1 2.0060 -7.8266 1.2516 30 1 2.1091 -6.2886 2.1411 31 1 1.6570 -9.6379 -2.6740 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596597904.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:33 Heat of formation + Delta-G solvation = 80.340883 kcal Electronic energy + Delta-G solvation = -17407.282916 eV Core-core repulsion = 14466.109222 eV Total energy + Delta-G solvation = -2941.173694 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.80207 -42.45912 -35.55812 -35.11724 -33.06724 -31.97403 -31.78573 -30.12702 -26.91968 -25.37412 -24.03608 -23.67783 -21.57174 -21.10411 -19.11030 -17.60179 -17.35389 -16.65863 -16.27239 -16.19626 -15.18763 -14.70261 -14.02299 -13.48873 -13.06320 -13.05135 -12.98971 -12.80771 -12.44178 -12.20379 -11.82513 -11.59492 -11.56798 -11.34901 -10.84172 -10.47646 -10.26254 -9.98169 -9.68488 -9.42716 -9.08598 -8.75757 -8.33863 -6.26677 -4.32036 1.31066 1.90559 2.31425 2.81792 3.16019 3.25895 3.29308 3.33353 3.64310 4.01652 4.22562 4.36792 4.63059 5.02059 5.13068 5.15438 5.43533 5.48630 5.64086 5.78061 5.83453 6.07154 6.09360 6.16211 6.26413 6.32185 6.49928 6.60170 6.65942 7.03595 7.06875 7.33232 8.21644 8.71856 8.82017 9.28438 10.85385 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.043141 B = 0.005221 C = 0.005029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.885623 B = 5361.842967 C = 5565.946136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.038 3.962 3 O -0.178 6.178 4 C -0.046 4.046 5 C -0.171 4.171 6 C -0.113 4.113 7 C 0.233 3.767 8 N -0.401 5.401 9 O 0.078 5.922 10 C 0.253 3.747 11 C 0.094 3.906 12 H 0.075 0.925 13 C -0.152 4.152 14 C -0.528 4.528 15 H 0.081 0.919 16 C 0.082 3.918 17 N -0.885 5.885 18 Si 0.885 3.115 19 H -0.273 1.273 20 H -0.291 1.291 21 H -0.262 1.262 22 N -0.502 5.502 23 H 0.085 0.915 24 H 0.078 0.922 25 H 0.101 0.899 26 H 0.208 0.792 27 H 0.159 0.841 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.038 0.962 31 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.816 14.279 6.884 15.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.016 4.016 3 O -0.075 6.075 4 C -0.112 4.112 5 C -0.191 4.191 6 C -0.116 4.116 7 C -0.037 4.037 8 N -0.113 5.113 9 O 0.022 5.978 10 C 0.034 3.966 11 C 0.074 3.926 12 H 0.093 0.907 13 C -0.210 4.210 14 C -0.566 4.566 15 H 0.099 0.901 16 C -0.122 4.122 17 N -0.521 5.521 18 Si 0.714 3.286 19 H -0.199 1.199 20 H -0.219 1.219 21 H -0.187 1.187 22 N -0.235 5.235 23 H 0.104 0.896 24 H 0.097 0.903 25 H 0.119 0.881 26 H 0.225 0.775 27 H 0.177 0.823 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.394 15.102 6.770 16.608 hybrid contribution 0.802 -1.003 0.447 1.360 sum 2.196 14.099 7.217 15.990 Atomic orbital electron populations 1.20485 0.84106 1.04760 1.04065 1.22521 0.93954 0.83200 1.01940 1.83807 1.17029 1.34387 1.72228 1.23838 0.83662 0.96080 1.07619 1.22770 0.96673 0.93960 1.05694 1.18361 0.93347 0.87207 1.12695 1.22777 0.85523 0.93828 1.01556 1.74780 1.20979 0.92140 1.23445 1.85243 1.32502 1.14324 1.65775 1.29311 0.78272 0.99475 0.89552 1.18175 0.98724 0.78640 0.97099 0.90698 1.22215 1.02253 1.00177 0.96316 1.20661 1.35724 0.95340 1.04898 0.90108 1.24864 0.94878 0.97136 0.95348 1.69852 1.44081 1.11927 1.26279 0.86881 0.80769 0.80055 0.80896 1.19930 1.21858 1.18721 1.72050 1.31407 0.96703 1.23384 0.89629 0.90312 0.88061 0.77518 0.82298 0.91561 0.92424 0.94254 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.92 10.01 36.01 0.36 -0.56 16 2 C 0.04 0.54 7.36 -35.15 -0.26 0.29 16 3 O -0.18 -2.31 10.54 6.93 0.07 -2.23 16 4 C -0.05 -0.52 12.04 29.35 0.35 -0.17 16 5 C -0.17 -2.42 11.15 -37.52 -0.42 -2.84 16 6 C -0.11 -1.92 6.33 -103.16 -0.65 -2.58 16 7 C 0.23 4.70 8.02 -156.08 -1.25 3.45 16 8 N -0.40 -8.18 10.38 30.98 0.32 -7.85 16 9 O 0.08 1.69 11.29 18.07 0.20 1.90 16 10 C 0.25 5.63 6.94 -12.98 -0.09 5.54 16 11 C 0.09 2.16 2.36 -92.92 -0.22 1.94 16 12 H 0.08 1.71 7.20 -51.93 -0.37 1.33 16 13 C -0.15 -3.05 8.66 37.16 0.32 -2.73 16 14 C -0.53 -14.17 9.13 -34.44 -0.31 -14.49 16 15 H 0.08 2.40 7.98 -52.49 -0.42 1.98 16 16 C 0.08 2.22 5.45 -17.83 -0.10 2.13 16 17 N -0.89 -25.71 13.96 55.43 0.77 -24.94 16 18 Si 0.88 20.16 24.37 -169.99 -4.14 16.02 16 19 H -0.27 -5.96 6.87 56.52 0.39 -5.57 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.26 -5.65 6.53 56.52 0.37 -5.28 16 22 N -0.50 -10.96 11.58 -9.87 -0.11 -11.07 16 23 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.10 1.37 6.64 -51.93 -0.34 1.03 16 26 H 0.21 1.34 8.06 -52.49 -0.42 0.92 16 27 H 0.16 2.11 8.06 -52.49 -0.42 1.69 16 28 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.06 1.18 3.27 -51.93 -0.17 1.01 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.27 7.28 8.31 -40.82 -0.34 6.95 16 LS Contribution 272.16 15.07 4.10 4.10 Total: -1.00 -30.35 272.16 -4.08 -34.43 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -3.03 Total: -0.32 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -2.27 Total: -10.03 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: 0.98 Total: -43.86 kcal Atomic # 8 Polarization: -0.61 SS G_CDS: 0.28 Total: -0.34 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.14 Total: 16.02 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.35 -4.08 -34.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596597904.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.766 kcal (2) G-P(sol) polarization free energy of solvation -30.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds