Wall clock time and date at job start Mon Mar 30 2020 05:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.33975 * 125.77096 * 2 1 4 4 C 1.34174 * 110.77512 * 179.70743 * 3 2 1 5 5 C 1.34329 * 109.00532 * 0.44833 * 4 3 2 6 6 C 1.35879 * 125.76763 * 179.97438 * 2 1 3 7 7 C 1.48311 * 127.12816 * 0.02907 * 6 2 1 8 8 N 1.30838 * 126.41981 * 359.70558 * 7 6 2 9 9 O 1.21287 * 110.08382 * 179.84817 * 8 7 6 10 10 C 1.33658 * 110.03868 * 0.42467 * 9 8 7 11 11 C 1.50706 * 126.42877 * 179.77182 * 10 9 8 12 12 H 1.09004 * 109.46692 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47246 * 299.95707 * 11 10 9 14 14 C 1.50700 * 109.47248 * 59.96081 * 11 10 9 15 15 H 1.08001 * 119.99499 * 0.02562 * 14 11 10 16 16 C 1.37869 * 120.00308 * 179.97438 * 14 11 10 17 17 N 1.31508 * 120.00261 * 179.97438 * 16 14 11 18 18 Si 1.86806 * 119.99959 * 0.02562 * 16 14 11 19 19 H 1.48495 * 109.47048 * 89.99823 * 18 16 14 20 20 H 1.48494 * 109.46946 * 209.99902 * 18 16 14 21 21 H 1.48495 * 109.46922 * 330.00054 * 18 16 14 22 22 N 1.30973 * 107.14288 * 359.73952 * 10 9 8 23 23 H 1.09000 * 109.47259 * 270.02586 * 1 2 3 24 24 H 1.08992 * 109.47086 * 30.02798 * 1 2 3 25 25 H 1.08996 * 109.47033 * 150.02906 * 1 2 3 26 26 H 1.08002 * 125.49571 * 180.28446 * 4 3 2 27 27 H 1.08002 * 126.99987 * 179.84026 * 5 4 3 28 28 H 1.08999 * 109.46831 * 60.00063 * 13 11 10 29 29 H 1.08998 * 109.47173 * 180.02562 * 13 11 10 30 30 H 1.08999 * 109.47157 * 300.00195 * 13 11 10 31 31 H 0.97006 * 120.00256 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2901 1.0870 0.0000 4 6 3.5862 0.7399 0.0064 5 6 3.6801 -0.6001 0.0009 6 6 2.3012 -1.1025 0.0005 7 6 1.8650 -2.5200 0.0005 8 7 0.6303 -2.9528 0.0055 9 8 0.6140 -4.1656 0.0009 10 6 1.8634 -4.6404 0.0017 11 6 2.2692 -6.0918 0.0018 12 1 3.3568 -6.1649 0.0021 13 6 1.7121 -6.7770 1.2513 14 6 1.7203 -6.7670 -1.2285 15 1 1.1363 -6.2016 -1.9396 16 6 1.9644 -8.1063 -1.4468 17 7 1.4849 -8.6957 -2.5202 18 14 2.9750 -9.0841 -0.2170 19 1 2.0751 -9.6700 0.8086 20 1 3.6958 -10.1733 -0.9236 21 1 3.9574 -8.1861 0.4414 22 7 2.6689 -3.6076 0.0015 23 1 -0.3634 0.0005 1.0277 24 1 -0.3633 0.8897 -0.5142 25 1 -0.3633 -0.8902 -0.5134 26 1 4.4194 1.4270 0.0122 27 1 4.5860 -1.1882 0.0013 28 1 0.6245 -6.7038 1.2513 29 1 2.0060 -7.8266 1.2516 30 1 2.1091 -6.2886 2.1411 31 1 1.6570 -9.6379 -2.6740 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596597904.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:32 Heat of formation + Delta-G solvation = 59.050093 kcal Electronic energy + Delta-G solvation = -17408.206153 eV Core-core repulsion = 14466.109222 eV Total energy + Delta-G solvation = -2942.096932 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -46.43040 -43.51369 -37.25958 -36.77314 -34.57007 -33.58283 -32.96126 -31.74007 -27.98899 -27.27529 -25.51510 -25.36844 -23.03907 -22.35898 -20.44218 -19.24266 -18.77427 -18.50280 -17.72793 -17.26003 -16.98060 -15.94883 -15.73954 -15.00915 -14.55855 -14.17717 -14.08126 -13.95636 -13.81516 -13.70218 -13.53488 -13.22089 -13.08369 -12.79000 -12.63665 -12.17477 -11.96431 -11.65679 -11.45434 -11.18722 -10.79629 -10.41935 -9.49033 -8.36046 -6.48142 -0.08981 0.54080 1.05995 1.36893 1.43274 1.53341 1.79264 1.90011 1.95559 2.30687 2.60248 2.92321 3.02021 3.60553 3.79978 4.20099 4.22887 4.39804 4.47634 4.51951 4.54601 4.63299 4.71671 4.81604 4.86797 4.90243 4.96620 5.19672 5.33107 5.35951 5.40176 5.99288 6.09545 6.54405 7.14597 7.17364 8.80145 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.043141 B = 0.005221 C = 0.005029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.885623 B = 5361.842967 C = 5565.946136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.049 3.951 3 O -0.173 6.173 4 C -0.014 4.014 5 C -0.201 4.201 6 C -0.163 4.163 7 C 0.237 3.763 8 N -0.404 5.404 9 O 0.059 5.941 10 C 0.242 3.758 11 C 0.097 3.903 12 H 0.080 0.920 13 C -0.147 4.147 14 C -0.536 4.536 15 H 0.031 0.969 16 C 0.028 3.972 17 N -0.937 5.937 18 Si 0.949 3.051 19 H -0.252 1.252 20 H -0.294 1.294 21 H -0.238 1.238 22 N -0.513 5.513 23 H 0.100 0.900 24 H 0.108 0.892 25 H 0.080 0.920 26 H 0.260 0.740 27 H 0.161 0.839 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.112 15.926 8.843 18.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.005 4.005 3 O -0.069 6.069 4 C -0.079 4.079 5 C -0.221 4.221 6 C -0.166 4.166 7 C -0.032 4.032 8 N -0.119 5.119 9 O 0.007 5.993 10 C 0.023 3.977 11 C 0.076 3.924 12 H 0.098 0.902 13 C -0.205 4.205 14 C -0.574 4.574 15 H 0.050 0.950 16 C -0.172 4.172 17 N -0.575 5.575 18 Si 0.773 3.227 19 H -0.177 1.177 20 H -0.221 1.221 21 H -0.161 1.161 22 N -0.247 5.247 23 H 0.119 0.881 24 H 0.126 0.874 25 H 0.099 0.901 26 H 0.276 0.724 27 H 0.178 0.822 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.672 16.755 8.743 19.087 hybrid contribution 0.380 -1.310 -0.258 1.388 sum 3.052 15.445 8.486 17.885 Atomic orbital electron populations 1.20575 0.82666 1.05143 1.05122 1.22853 0.94907 0.82871 0.99884 1.83864 1.17774 1.33577 1.71654 1.24736 0.83793 0.95742 1.03599 1.22927 0.95633 0.95419 1.08099 1.18698 0.95627 0.86181 1.16136 1.23333 0.85073 0.94999 0.99831 1.74775 1.21246 0.91412 1.24509 1.85220 1.32483 1.15135 1.66413 1.29235 0.78672 0.99545 0.90218 1.18084 0.98789 0.78948 0.96599 0.90214 1.22139 1.02360 1.00108 0.95900 1.20760 1.35313 0.95602 1.05771 0.95012 1.25786 0.95950 0.98114 0.97320 1.70003 1.46098 1.12572 1.28782 0.85851 0.79706 0.78477 0.78638 1.17705 1.22148 1.16101 1.72030 1.31817 0.97157 1.23732 0.88135 0.87380 0.90147 0.72422 0.82156 0.91581 0.92199 0.91068 0.91748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.74 10.01 71.24 0.71 -1.03 16 2 C 0.05 1.34 7.36 25.14 0.19 1.53 16 3 O -0.17 -3.91 10.54 1.88 0.02 -3.89 16 4 C -0.01 -0.26 12.04 66.93 0.81 0.55 16 5 C -0.20 -5.36 11.15 23.61 0.26 -5.10 16 6 C -0.16 -5.44 6.33 -18.92 -0.12 -5.56 16 7 C 0.24 9.68 8.02 137.23 1.10 10.78 16 8 N -0.40 -16.83 10.38 -59.02 -0.61 -17.44 16 9 O 0.06 2.67 11.29 74.71 0.84 3.52 16 10 C 0.24 10.98 6.94 88.36 0.61 11.59 16 11 C 0.10 4.40 2.36 -12.28 -0.03 4.37 16 12 H 0.08 3.55 7.20 -2.39 -0.02 3.54 16 13 C -0.15 -5.65 8.66 71.98 0.62 -5.03 16 14 C -0.54 -29.76 9.13 25.60 0.23 -29.52 16 15 H 0.03 2.01 7.98 -2.91 -0.02 1.99 16 16 C 0.03 1.54 5.45 84.65 0.46 2.00 16 17 N -0.94 -56.17 13.96 21.44 0.30 -55.87 16 18 Si 0.95 40.70 24.37 68.60 1.67 42.37 16 19 H -0.25 -9.95 6.87 99.48 0.68 -9.27 16 20 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 21 H -0.24 -9.20 6.53 99.48 0.65 -8.55 16 22 N -0.51 -22.63 11.58 -302.40 -3.50 -26.14 16 23 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 24 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.08 2.16 6.64 -2.39 -0.02 2.14 16 26 H 0.26 1.91 8.06 -2.91 -0.02 1.88 16 27 H 0.16 4.10 8.06 -2.91 -0.02 4.08 16 28 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.06 2.27 3.27 -2.39 -0.01 2.26 16 30 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.27 15.17 8.31 -92.70 -0.77 14.40 16 Total: -1.00 -68.69 272.16 4.65 -64.04 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: 1.08 Total: 8.83 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: 4.85 Total: -15.42 kcal Atomic # 7 Polarization: -95.63 SS G_CDS: -3.81 Total: -99.44 kcal Atomic # 8 Polarization: -1.24 SS G_CDS: 0.86 Total: -0.37 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 1.67 Total: 42.37 kcal Total: -68.69 4.65 -64.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596597904.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.089 kcal (2) G-P(sol) polarization free energy of solvation -68.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds