Wall clock time and date at job start Mon Mar 30 2020 06:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99972 * 2 1 4 4 H 1.48496 * 109.47458 * 240.00100 * 3 2 1 5 5 H 1.48499 * 109.47096 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47197 * 119.99972 * 3 2 1 7 7 C 1.37875 * 120.00231 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00352 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99945 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47323 * 180.02562 * 9 7 2 11 11 O 1.42893 * 109.47140 * 180.02562 * 10 9 7 12 12 C 1.35899 * 117.00058 * 179.97438 * 11 10 9 13 13 C 1.38753 * 120.09431 * 0.02562 * 12 11 10 14 14 C 1.38000 * 119.88194 * 180.02562 * 13 12 11 15 15 C 1.38545 * 120.29231 * 359.97438 * 14 13 12 16 16 C 1.38261 * 119.93638 * 0.02562 * 15 14 13 17 17 C 1.38418 * 119.90607 * 0.02562 * 16 15 14 18 18 C 1.51371 * 109.75811 * 180.02562 * 16 15 14 19 19 H 1.09003 * 110.38902 * 136.16862 * 18 16 15 20 20 O 1.42905 * 110.30413 * 258.27745 * 18 16 15 21 21 C 1.54345 * 105.17112 * 17.20088 * 18 16 15 22 22 C 1.51385 * 130.32478 * 180.02562 * 15 14 13 23 23 H 0.96996 * 120.00156 * 0.02562 * 1 2 3 24 24 H 1.09011 * 109.46893 * 60.00014 * 9 7 2 25 25 H 1.08999 * 109.47103 * 300.00318 * 9 7 2 26 26 H 1.08998 * 109.46879 * 60.00143 * 10 9 7 27 27 H 1.09006 * 109.47016 * 300.00498 * 10 9 7 28 28 H 1.08003 * 120.05455 * 0.04346 * 13 12 11 29 29 H 1.08000 * 119.85526 * 180.02562 * 14 13 12 30 30 H 1.07995 * 119.91666 * 179.97438 * 17 16 15 31 31 H 0.96696 * 114.00036 * 295.74589 * 20 18 16 32 32 H 1.08996 * 110.82040 * 91.86097 * 21 18 16 33 33 H 1.09002 * 110.81796 * 215.40709 * 21 18 16 34 34 H 1.08993 * 110.30595 * 43.84594 * 22 15 14 35 35 H 1.09004 * 110.29803 * 281.69587 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 8 1.5309 -4.8996 -0.0011 12 6 2.2710 -6.0393 -0.0018 13 6 3.6568 -5.9690 -0.0013 14 6 4.4041 -7.1292 -0.0024 15 6 3.7768 -8.3645 -0.0036 16 6 2.3961 -8.4372 -0.0041 17 6 1.6438 -7.2753 -0.0040 18 6 1.9601 -9.8868 -0.0047 19 1 1.1446 -10.0383 0.7026 20 8 1.5569 -10.2828 -1.3172 21 6 3.2063 -10.6836 0.4360 22 6 4.3623 -9.7605 -0.0044 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6248 -2.5571 0.8896 26 1 2.8720 -3.6043 0.8895 27 1 2.8721 -3.6043 -0.8905 28 1 4.1496 -5.0080 0.0003 29 1 5.4827 -7.0739 -0.0016 30 1 0.5654 -7.3319 -0.0048 31 1 0.7777 -9.8149 -1.6473 32 1 3.2132 -10.8254 1.5167 33 1 3.2567 -11.6414 -0.0819 34 1 5.1882 -9.8247 0.7039 35 1 4.7000 -10.0283 -1.0056 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690752806.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:02 Heat of formation + Delta-G solvation = -77.654132 kcal Electronic energy + Delta-G solvation = -17148.016244 eV Core-core repulsion = 14303.531716 eV Total energy + Delta-G solvation = -2844.484529 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.41467 -38.58640 -36.25381 -34.02986 -33.25858 -31.21031 -30.10265 -28.21998 -26.63806 -24.82794 -22.86256 -21.46811 -20.81020 -20.14533 -18.06922 -17.22034 -16.22794 -15.80693 -15.40380 -15.27673 -14.72502 -14.48239 -14.45032 -13.88821 -13.37634 -12.87870 -12.66302 -12.35188 -12.15191 -11.86129 -11.67624 -11.34587 -11.15027 -11.06355 -10.81660 -10.72608 -10.53878 -10.08004 -9.83357 -9.68647 -9.33802 -8.82024 -8.46652 -7.76802 -6.12266 -4.17272 1.36055 1.58643 3.27400 3.31785 3.33399 3.69119 3.78054 4.12003 4.35874 4.48489 4.57820 4.88698 4.98480 5.03775 5.24060 5.29313 5.39441 5.49919 5.52521 5.67135 5.75773 5.81240 5.94917 5.99958 6.03374 6.19373 6.38691 6.51266 6.67497 6.68576 6.89374 7.45498 7.47378 7.61075 7.78306 8.02218 8.21235 8.88031 9.47175 10.99268 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.053986 B = 0.003776 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.528575 B = 7414.160935 C = 7812.126290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.026 3.974 10 C 0.065 3.935 11 O -0.315 6.315 12 C 0.143 3.857 13 C -0.201 4.201 14 C -0.070 4.070 15 C -0.134 4.134 16 C -0.107 4.107 17 C -0.140 4.140 18 C 0.147 3.853 19 H 0.065 0.935 20 O -0.558 6.558 21 C -0.113 4.113 22 C -0.073 4.073 23 H 0.264 0.736 24 H 0.028 0.972 25 H 0.028 0.972 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.134 0.866 29 H 0.120 0.880 30 H 0.126 0.874 31 H 0.381 0.619 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.315 -18.995 0.641 20.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.076 0.924 9 C -0.011 4.011 10 C -0.009 4.009 11 O -0.228 6.228 12 C 0.096 3.904 13 C -0.220 4.220 14 C -0.089 4.089 15 C -0.135 4.135 16 C -0.107 4.107 17 C -0.159 4.159 18 C 0.089 3.911 19 H 0.083 0.917 20 O -0.364 6.364 21 C -0.151 4.151 22 C -0.110 4.110 23 H 0.074 0.926 24 H 0.046 0.954 25 H 0.046 0.954 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.151 0.849 29 H 0.138 0.862 30 H 0.144 0.856 31 H 0.229 0.771 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.453 -19.224 0.706 20.291 hybrid contribution 0.184 1.633 -0.047 1.644 sum 6.637 -17.591 0.659 18.813 Atomic orbital electron populations 1.69964 1.06114 1.27128 1.49553 1.24988 0.94909 0.99389 0.94851 0.86537 0.79498 0.82548 0.78734 1.20071 1.21092 1.20080 1.20934 0.93023 0.90218 1.52471 0.92400 1.19123 0.94162 0.88979 0.98879 1.23349 0.97125 0.80744 0.99686 1.86165 1.36490 1.13138 1.87033 1.18987 0.90060 0.87399 0.93935 1.21323 0.93193 0.99568 1.07905 1.20373 0.99422 0.90654 0.98410 1.20346 0.94184 0.94571 1.04371 1.20861 0.94621 0.94862 1.00380 1.19794 1.00011 0.88914 1.07159 1.21143 0.96772 0.88411 0.84808 0.91690 1.86507 1.51458 1.66248 1.32183 1.22299 0.92835 0.98749 1.01182 1.20934 0.97702 0.90511 1.01867 0.92616 0.95383 0.95394 0.93087 0.93094 0.84860 0.86187 0.85617 0.77133 0.89711 0.89625 0.90914 0.90403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.53 -14.71 9.11 -34.44 -0.31 -15.02 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.03 0.67 5.34 -27.88 -0.15 0.53 16 10 C 0.06 1.39 4.68 37.16 0.17 1.57 16 11 O -0.32 -6.50 10.14 -19.42 -0.20 -6.70 16 12 C 0.14 2.52 6.68 -39.26 -0.26 2.26 16 13 C -0.20 -3.20 9.04 -39.48 -0.36 -3.55 16 14 C -0.07 -0.97 10.03 -39.56 -0.40 -1.36 16 15 C -0.13 -1.77 6.14 -104.16 -0.64 -2.41 16 16 C -0.11 -1.44 5.80 -104.22 -0.60 -2.04 16 17 C -0.14 -2.14 9.98 -39.38 -0.39 -2.54 16 18 C 0.15 1.59 4.22 -26.85 -0.11 1.48 16 19 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 20 O -0.56 -6.16 13.35 -35.23 -0.47 -6.63 16 21 C -0.11 -1.04 6.81 -25.31 -0.17 -1.21 16 22 C -0.07 -0.74 6.77 -26.83 -0.18 -0.92 16 23 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 24 H 0.03 0.78 8.14 -51.92 -0.42 0.36 16 25 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.05 1.04 7.66 -51.93 -0.40 0.64 16 27 H 0.05 1.04 7.67 -51.93 -0.40 0.64 16 28 H 0.13 2.05 6.31 -52.48 -0.33 1.72 16 29 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 30 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 31 H 0.38 3.00 9.12 45.56 0.42 3.42 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.09 0.72 8.10 -51.93 -0.42 0.30 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 297.58 15.07 4.48 4.48 Total: -1.00 -31.26 297.58 -8.03 -39.29 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -4.06 Total: 0.66 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: -3.51 Total: -21.61 kcal Atomic # 7 Polarization: -26.42 SS G_CDS: 0.74 Total: -25.68 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -0.67 Total: -13.33 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.26 -8.03 -39.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690752806.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.360 kcal (2) G-P(sol) polarization free energy of solvation -31.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds