Wall clock time and date at job start Mon Mar 30 2020 06:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99996 * 2 1 4 4 H 1.48498 * 109.47160 * 269.99540 * 3 2 1 5 5 H 1.48500 * 109.47530 * 29.99763 * 3 2 1 6 6 H 1.48501 * 109.47051 * 149.99853 * 3 2 1 7 7 C 1.37875 * 119.99756 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00071 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00159 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47353 * 179.97438 * 9 7 2 11 11 O 1.42905 * 109.47300 * 179.97438 * 10 9 7 12 12 C 1.35902 * 116.99804 * 180.02562 * 11 10 9 13 13 C 1.38752 * 120.09488 * 0.02562 * 12 11 10 14 14 C 1.37999 * 119.87619 * 180.25967 * 13 12 11 15 15 C 1.38548 * 120.29559 * 359.45804 * 14 13 12 16 16 C 1.38264 * 119.93220 * 0.53991 * 15 14 13 17 17 C 1.38418 * 119.90447 * 359.72387 * 16 15 14 18 18 C 1.51380 * 109.75640 * 179.69763 * 16 15 14 19 19 H 1.08997 * 110.30634 * 258.27635 * 18 16 15 20 20 O 1.42899 * 110.30254 * 136.22018 * 18 16 15 21 21 C 1.54348 * 105.16717 * 17.20147 * 18 16 15 22 22 C 1.51387 * 130.32583 * 180.16405 * 15 14 13 23 23 H 0.97006 * 119.99882 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47301 * 59.99441 * 9 7 2 25 25 H 1.09010 * 109.47123 * 299.99905 * 9 7 2 26 26 H 1.09010 * 109.47106 * 59.99838 * 10 9 7 27 27 H 1.08998 * 109.47469 * 299.99926 * 10 9 7 28 28 H 1.08002 * 120.05762 * 359.97438 * 13 12 11 29 29 H 1.08001 * 119.85438 * 179.72389 * 14 13 12 30 30 H 1.08001 * 119.90922 * 180.02562 * 17 16 15 31 31 H 0.96694 * 114.00050 * 61.45687 * 20 18 16 32 32 H 1.08995 * 110.82266 * 91.85638 * 21 18 16 33 33 H 1.08997 * 110.81821 * 215.40466 * 21 18 16 34 34 H 1.09002 * 110.30084 * 44.22063 * 22 15 14 35 35 H 1.08997 * 110.38920 * 282.11081 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 8 1.5305 -4.8997 0.0011 12 6 2.2707 -6.0394 0.0018 13 6 3.6565 -5.9691 0.0023 14 6 4.4037 -7.1293 -0.0025 15 6 3.7764 -8.3646 0.0035 16 6 2.3956 -8.4373 0.0030 17 6 1.6435 -7.2753 0.0023 18 6 1.9595 -9.8869 0.0026 19 1 1.6520 -10.1891 -0.9985 20 8 0.8897 -10.0830 0.9295 21 6 3.2058 -10.6836 0.4435 22 6 4.3619 -9.7607 0.0034 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6239 -2.5567 0.8904 26 1 2.8718 -3.6044 0.8906 27 1 2.8718 -3.6044 -0.8894 28 1 4.1493 -5.0081 0.0019 29 1 5.4823 -7.0741 -0.0065 30 1 0.5649 -7.3319 0.0023 31 1 0.0941 -9.5727 0.7255 32 1 3.2128 -10.8251 1.5242 33 1 3.2563 -11.6415 -0.0741 34 1 5.1875 -9.8245 0.7123 35 1 4.7012 -10.0301 -0.9967 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690770073.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:05 Heat of formation + Delta-G solvation = -99.313165 kcal Electronic energy + Delta-G solvation = -17146.733440 eV Core-core repulsion = 14301.309705 eV Total energy + Delta-G solvation = -2845.423735 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.52357 -39.84503 -37.31715 -35.62413 -34.91492 -32.57931 -31.70552 -29.28241 -27.71909 -26.59729 -24.06944 -23.11840 -21.72808 -21.49094 -19.26401 -18.38496 -18.03126 -17.14690 -16.97941 -16.54436 -16.32184 -16.16490 -15.38926 -14.54994 -14.38920 -14.32250 -14.21667 -13.98607 -13.29036 -13.20679 -12.84070 -12.74627 -12.65846 -12.53828 -12.36112 -12.05504 -11.84524 -11.59082 -11.46181 -11.36313 -10.98761 -10.63542 -9.86759 -8.99660 -8.28267 -6.42285 0.26022 0.41841 1.40296 1.42596 1.53774 2.21390 2.46146 2.67484 3.06250 3.30170 3.51216 3.67256 3.88967 4.04025 4.19370 4.21882 4.23526 4.32059 4.35610 4.48173 4.68411 4.69536 4.79822 4.97131 4.97774 5.15060 5.25378 5.28812 5.34067 5.41569 5.44019 5.57608 5.65234 5.81960 6.05167 6.51125 6.72360 6.74425 7.28070 8.84916 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.050986 B = 0.003827 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.033828 B = 7314.920967 C = 7796.006235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.977 3.023 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.548 4.548 8 H 0.071 0.929 9 C 0.028 3.972 10 C 0.084 3.916 11 O -0.340 6.340 12 C 0.106 3.894 13 C -0.215 4.215 14 C -0.069 4.069 15 C -0.141 4.141 16 C -0.108 4.108 17 C -0.153 4.153 18 C 0.145 3.855 19 H 0.090 0.910 20 O -0.575 6.575 21 C -0.108 4.108 22 C -0.069 4.069 23 H 0.267 0.733 24 H -0.001 1.001 25 H -0.002 1.002 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.132 0.868 29 H 0.150 0.850 30 H 0.129 0.871 31 H 0.391 0.609 32 H 0.075 0.925 33 H 0.109 0.891 34 H 0.092 0.908 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.166 -20.554 -1.135 22.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.800 3.200 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.183 1.183 7 C -0.585 4.585 8 H 0.089 0.911 9 C -0.009 4.009 10 C 0.010 3.990 11 O -0.255 6.255 12 C 0.060 3.940 13 C -0.234 4.234 14 C -0.087 4.087 15 C -0.141 4.141 16 C -0.108 4.108 17 C -0.171 4.171 18 C 0.086 3.914 19 H 0.108 0.892 20 O -0.383 6.383 21 C -0.146 4.146 22 C -0.106 4.106 23 H 0.076 0.924 24 H 0.017 0.983 25 H 0.016 0.984 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.150 0.850 29 H 0.168 0.832 30 H 0.147 0.853 31 H 0.241 0.759 32 H 0.094 0.906 33 H 0.127 0.873 34 H 0.110 0.890 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 9.237 -20.817 -0.855 22.790 hybrid contribution -0.500 1.911 -0.245 1.990 sum 8.737 -18.906 -1.100 20.856 Atomic orbital electron populations 1.70123 1.08074 1.28272 1.50540 1.26049 0.95830 1.03718 0.94078 0.85269 0.78561 0.77448 0.78694 1.19482 1.20642 1.18308 1.21399 0.93849 0.91005 1.52284 0.91089 1.18965 0.94540 0.91362 0.96013 1.22879 0.95447 0.80149 1.00505 1.86075 1.37384 1.13685 1.88327 1.19300 0.91061 0.86784 0.96824 1.21428 0.92555 1.00699 1.08719 1.20688 1.00822 0.90046 0.97142 1.20830 0.94119 0.96183 1.03008 1.21338 0.95192 0.95785 0.98521 1.19895 1.00619 0.88971 1.07651 1.21563 0.88528 0.87763 0.93534 0.89200 1.86477 1.26527 1.71192 1.54071 1.22402 0.90629 0.98777 1.02745 1.21030 0.98091 0.87826 1.03640 0.92404 0.98283 0.98354 0.92267 0.92085 0.84972 0.83206 0.85297 0.75917 0.90599 0.87294 0.88983 0.88119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.86 13.29 21.45 0.28 -56.57 16 2 C 0.00 0.11 5.46 84.65 0.46 0.57 16 3 Si 0.98 43.52 29.54 68.60 2.03 45.55 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 7 C -0.55 -31.10 9.11 25.60 0.23 -30.86 16 8 H 0.07 3.75 7.74 -2.91 -0.02 3.73 16 9 C 0.03 1.57 5.34 29.85 0.16 1.73 16 10 C 0.08 3.76 4.68 71.98 0.34 4.10 16 11 O -0.34 -14.78 10.14 -92.45 -0.94 -15.72 16 12 C 0.11 3.83 6.68 22.48 0.15 3.98 16 13 C -0.22 -6.77 9.04 22.34 0.20 -6.57 16 14 C -0.07 -1.73 10.03 22.29 0.22 -1.50 16 15 C -0.14 -3.26 6.14 -19.57 -0.12 -3.38 16 16 C -0.11 -2.74 5.81 -19.60 -0.11 -2.85 16 17 C -0.15 -4.74 9.87 22.40 0.22 -4.52 16 18 C 0.14 2.77 4.22 30.52 0.13 2.90 16 19 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 20 O -0.57 -12.07 13.36 -148.98 -1.99 -14.06 16 21 C -0.11 -1.60 6.80 31.51 0.21 -1.39 16 22 C -0.07 -1.01 6.77 30.52 0.21 -0.81 16 23 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 24 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 25 H 0.00 -0.12 8.14 -2.38 -0.02 -0.14 16 26 H 0.06 2.49 7.66 -2.38 -0.02 2.47 16 27 H 0.06 2.55 7.67 -2.39 -0.02 2.53 16 28 H 0.13 4.06 6.31 -2.91 -0.02 4.04 16 29 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 30 H 0.13 3.70 8.06 -2.91 -0.02 3.68 16 31 H 0.39 6.04 9.01 -74.06 -0.67 5.38 16 32 H 0.08 1.27 8.11 -2.39 -0.02 1.25 16 33 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -69.49 297.38 2.11 -67.38 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 0.42 Total: 12.04 kcal Atomic # 6 Polarization: -40.92 SS G_CDS: 2.30 Total: -38.61 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: 0.28 Total: -56.57 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -2.93 Total: -29.78 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -69.49 2.11 -67.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690770073.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.937 kcal (2) G-P(sol) polarization free energy of solvation -69.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds