Wall clock time and date at job start Mon Mar 30 2020 06:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99519 * 2 1 4 4 H 1.48502 * 109.46950 * 240.00025 * 3 2 1 5 5 H 1.48501 * 109.47423 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47065 * 120.00443 * 3 2 1 7 7 C 1.37877 * 120.00408 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99975 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99529 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46789 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47238 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.47066 * 304.99893 * 11 10 9 13 13 C 1.53006 * 109.47352 * 185.00146 * 11 10 9 14 14 C 1.50700 * 109.47205 * 174.99758 * 13 11 10 15 15 C 1.38234 * 119.99977 * 269.72580 * 14 13 11 16 16 C 1.38232 * 119.99751 * 179.76659 * 15 14 13 17 17 C 1.38238 * 120.00279 * 0.50783 * 16 15 14 18 18 C 1.38245 * 119.99608 * 359.74633 * 17 16 15 19 19 C 1.38228 * 119.99998 * 359.97438 * 18 17 16 20 20 C 1.50697 * 109.47491 * 64.99692 * 11 10 9 21 21 O 1.20833 * 119.99747 * 0.02562 * 20 11 10 22 22 O 1.34230 * 120.00262 * 179.72204 * 20 11 10 23 23 H 0.96993 * 120.00198 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47721 * 59.99797 * 9 7 2 25 25 H 1.08995 * 109.46931 * 299.99456 * 9 7 2 26 26 H 1.09001 * 109.47309 * 59.99917 * 10 9 7 27 27 H 1.09002 * 109.47347 * 300.00059 * 10 9 7 28 28 H 1.09004 * 109.46849 * 294.99599 * 13 11 10 29 29 H 1.08997 * 109.47050 * 54.99631 * 13 11 10 30 30 H 1.07994 * 120.00115 * 359.97438 * 15 14 13 31 31 H 1.07998 * 120.00301 * 180.22714 * 16 15 14 32 32 H 1.08001 * 120.00533 * 179.72262 * 17 16 15 33 33 H 1.07997 * 119.99663 * 179.97438 * 18 17 16 34 34 H 1.07998 * 119.99966 * 179.97438 * 19 18 17 35 35 H 0.96699 * 116.99771 * 180.27188 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2454 -3.6620 -0.0027 11 6 1.4806 -4.9870 -0.0033 12 1 0.7887 -5.0075 0.8388 13 6 2.4701 -6.1473 0.1214 14 6 1.7115 -7.4436 0.2445 15 6 1.3581 -7.9218 1.4924 16 6 0.6580 -9.1084 1.6050 17 6 0.3204 -9.8221 0.4702 18 6 0.6785 -9.3465 -0.7775 19 6 1.3735 -8.1570 -0.8903 20 6 0.7089 -5.1211 -1.2907 21 8 0.7653 -4.2468 -2.1228 22 8 -0.0363 -6.2147 -1.5158 23 1 -0.4850 0.8400 0.0004 24 1 0.6248 -2.5563 -0.8919 25 1 0.6243 -2.5574 0.8880 26 1 2.8721 -3.6050 0.8873 27 1 2.8721 -3.6034 -0.8927 28 1 3.1047 -6.1803 -0.7642 29 1 3.0893 -6.0032 1.0069 30 1 1.6260 -7.3667 2.3792 31 1 0.3786 -9.4802 2.5797 32 1 -0.2226 -10.7515 0.5584 33 1 0.4151 -9.9043 -1.6639 34 1 1.6536 -7.7856 -1.8650 35 1 -0.5101 -6.2574 -2.3577 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691827413.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:10 Heat of formation + Delta-G solvation = -107.694690 kcal Electronic energy + Delta-G solvation = -17728.314957 eV Core-core repulsion = 14882.527772 eV Total energy + Delta-G solvation = -2845.787185 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.52738 -39.83721 -37.34466 -36.44375 -34.99173 -32.79267 -31.61394 -30.11489 -26.86430 -25.55304 -23.49137 -23.29340 -21.80162 -21.01536 -18.96179 -18.42657 -17.81477 -17.46959 -16.74987 -16.38293 -15.86288 -15.72716 -14.91127 -14.61601 -14.37103 -14.12899 -14.02525 -13.79885 -13.44948 -13.00907 -12.91635 -12.79514 -12.46989 -12.36446 -12.25097 -11.89197 -11.79301 -11.65264 -11.38997 -11.10092 -11.03267 -10.47746 -9.60841 -9.42495 -8.17074 -6.27301 0.58659 0.68214 1.37057 1.38914 1.43314 1.50677 2.27248 2.42312 3.02733 3.16185 3.72059 4.00050 4.08715 4.22370 4.25889 4.31133 4.42635 4.59093 4.69859 4.78906 4.86070 4.93004 5.00749 5.08560 5.23261 5.32239 5.32609 5.51083 5.68737 5.71957 5.76956 5.81379 5.87769 5.97130 6.27591 6.28470 6.90015 7.15730 7.40552 8.95110 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.044130 B = 0.004712 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.340958 B = 5941.242842 C = 6171.298717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.004 4.004 3 Si 0.966 3.034 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.262 1.262 7 C -0.540 4.540 8 H 0.061 0.939 9 C 0.015 3.985 10 C -0.087 4.087 11 C -0.066 4.066 12 H 0.104 0.896 13 C -0.064 4.064 14 C -0.095 4.095 15 C -0.126 4.126 16 C -0.134 4.134 17 C -0.130 4.130 18 C -0.131 4.131 19 C -0.091 4.091 20 C 0.480 3.520 21 O -0.544 6.544 22 O -0.497 6.497 23 H 0.262 0.738 24 H 0.003 0.997 25 H -0.013 1.013 26 H 0.081 0.919 27 H 0.051 0.949 28 H 0.078 0.922 29 H 0.105 0.895 30 H 0.129 0.871 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.135 0.865 34 H 0.116 0.884 35 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.475 -20.686 1.278 20.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.201 4.201 3 Si 0.790 3.210 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.186 1.186 7 C -0.578 4.578 8 H 0.079 0.921 9 C -0.022 4.022 10 C -0.125 4.125 11 C -0.085 4.085 12 H 0.122 0.878 13 C -0.101 4.101 14 C -0.095 4.095 15 C -0.144 4.144 16 C -0.152 4.152 17 C -0.148 4.148 18 C -0.149 4.149 19 C -0.109 4.109 20 C 0.324 3.676 21 O -0.433 6.433 22 O -0.309 6.309 23 H 0.070 0.930 24 H 0.022 0.978 25 H 0.005 0.995 26 H 0.099 0.901 27 H 0.069 0.931 28 H 0.096 0.904 29 H 0.123 0.877 30 H 0.147 0.853 31 H 0.154 0.846 32 H 0.155 0.845 33 H 0.153 0.847 34 H 0.134 0.866 35 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 2.558 -20.327 1.422 20.537 hybrid contribution -0.421 1.245 -0.747 1.512 sum 2.137 -19.083 0.675 19.214 Atomic orbital electron populations 1.70114 1.07938 1.27618 1.52097 1.26012 0.95760 1.03469 0.94906 0.85500 0.78260 0.78036 0.79233 1.19488 1.20917 1.18627 1.21686 0.93538 0.92493 1.50061 0.92081 1.19158 0.94776 0.93152 0.95091 1.21434 0.97905 0.91419 1.01710 1.21223 0.97334 0.97355 0.92623 0.87763 1.20577 0.95767 0.88916 1.04816 1.19835 0.99705 0.95870 0.94069 1.21259 0.99063 0.96930 0.97123 1.21364 0.98926 0.95342 0.99564 1.21414 1.00164 1.00586 0.92600 1.21317 0.98889 0.96324 0.98326 1.21002 0.97684 0.94493 0.97705 1.23787 0.76709 0.78041 0.89050 1.90760 1.62781 1.41714 1.48091 1.84750 1.59048 1.41603 1.45507 0.92980 0.97838 0.99481 0.90062 0.93055 0.90358 0.87674 0.85266 0.84603 0.84457 0.84675 0.86623 0.72679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.82 13.29 21.45 0.28 -59.54 16 2 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 3 Si 0.97 45.91 29.54 68.60 2.03 47.93 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 5 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 6 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 7 C -0.54 -32.10 9.11 25.60 0.23 -31.87 16 8 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 9 C 0.02 0.84 4.72 29.85 0.14 0.98 16 10 C -0.09 -3.61 4.27 30.59 0.13 -3.48 16 11 C -0.07 -2.19 2.32 -11.54 -0.03 -2.21 16 12 H 0.10 3.42 8.14 -2.38 -0.02 3.41 16 13 C -0.06 -1.56 4.83 29.85 0.14 -1.42 16 14 C -0.09 -2.21 4.55 -19.87 -0.09 -2.30 16 15 C -0.13 -2.71 9.70 22.27 0.22 -2.49 16 16 C -0.13 -2.55 10.05 22.27 0.22 -2.33 16 17 C -0.13 -2.33 10.05 22.27 0.22 -2.10 16 18 C -0.13 -2.46 10.05 22.27 0.22 -2.24 16 19 C -0.09 -1.98 6.88 22.27 0.15 -1.83 16 20 C 0.48 17.04 7.26 71.23 0.52 17.56 16 21 O -0.54 -24.74 14.73 21.94 0.32 -24.42 16 22 O -0.50 -13.12 9.26 -51.41 -0.48 -13.59 16 23 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 24 H 0.00 0.21 5.96 -2.39 -0.01 0.19 16 25 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 26 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 27 H 0.05 2.19 7.96 -2.39 -0.02 2.17 16 28 H 0.08 1.87 8.09 -2.38 -0.02 1.85 16 29 H 0.10 2.21 8.08 -2.39 -0.02 2.19 16 30 H 0.13 2.44 8.06 -2.91 -0.02 2.42 16 31 H 0.14 1.98 8.06 -2.91 -0.02 1.95 16 32 H 0.14 1.78 8.06 -2.91 -0.02 1.75 16 33 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 34 H 0.12 2.43 7.57 -2.91 -0.02 2.41 16 35 H 0.41 7.75 9.10 -74.06 -0.67 7.07 16 Total: -1.00 -75.60 296.83 5.12 -70.48 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 0.41 Total: 12.66 kcal Atomic # 6 Polarization: -36.08 SS G_CDS: 2.55 Total: -33.52 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: 0.28 Total: -59.54 kcal Atomic # 8 Polarization: -37.86 SS G_CDS: -0.15 Total: -38.01 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.93 kcal Total: -75.60 5.12 -70.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691827413.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.216 kcal (2) G-P(sol) polarization free energy of solvation -75.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds