Wall clock time and date at job start Mon Mar 30 2020 06:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.46970 * 2 1 4 4 C 1.52997 * 109.47404 * 240.00049 * 2 1 3 5 5 C 1.50701 * 109.47212 * 174.99684 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47294 * 60.00559 * 9 7 5 11 11 H 1.48503 * 109.46954 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47431 * 300.00157 * 9 7 5 13 13 N 1.46504 * 109.47145 * 119.99584 * 2 1 3 14 14 C 1.39158 * 120.00386 * 275.00327 * 13 2 1 15 15 C 1.38854 * 120.14539 * 359.97438 * 14 13 2 16 16 C 1.38022 * 120.09932 * 179.97438 * 15 14 13 17 17 C 1.38750 * 120.39739 * 0.03006 * 16 15 14 18 18 F 1.35099 * 119.85338 * 179.97438 * 17 16 15 19 19 C 1.37984 * 120.29316 * 0.02562 * 17 16 15 20 20 C 1.39756 * 119.89039 * 359.68766 * 19 17 16 21 21 C 1.43202 * 120.19471 * 180.29410 * 20 19 17 22 22 N 4.96458 * 109.88388 * 132.42959 * 2 1 3 23 23 H 1.09000 * 109.47476 * 60.00038 * 1 2 3 24 24 H 1.09008 * 109.46970 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47654 * 299.99762 * 1 2 3 26 26 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 27 27 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 28 28 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 29 29 H 0.97006 * 119.99491 * 95.00433 * 13 2 1 30 30 H 1.08004 * 119.94698 * 359.97438 * 15 14 13 31 31 H 1.07998 * 119.80376 * 180.02562 * 16 15 14 32 32 H 1.07999 * 120.05268 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6148 -1.3127 6 1 4.0790 -0.0860 -0.5392 7 6 4.2305 -1.1934 -2.3578 8 7 3.5765 -1.8377 -3.2994 9 14 6.0922 -1.0621 -2.4360 10 1 6.6839 -1.6881 -1.2263 11 1 6.5872 -1.7620 -3.6486 12 1 6.4855 0.3687 -2.4957 13 7 2.0183 -0.6905 1.1962 14 6 2.1512 0.0037 2.3950 15 6 1.8223 1.3511 2.4606 16 6 1.9539 2.0386 3.6502 17 6 2.4153 1.3916 4.7876 18 9 2.5404 2.0753 5.9461 19 6 2.7479 0.0533 4.7405 20 6 2.6136 -0.6561 3.5439 21 6 2.9509 -2.0467 3.4892 22 7 3.2185 -3.1498 3.4459 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.6054 -0.2617 -2.1370 27 1 1.7517 -1.7715 -1.2055 28 1 4.0609 -2.2444 -4.0348 29 1 2.2490 -1.6317 1.1527 30 1 1.4629 1.8619 1.5795 31 1 1.6963 3.0864 3.6959 32 1 3.1070 -0.4463 5.6281 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695812806.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:14 Heat of formation + Delta-G solvation = -20.108040 kcal Electronic energy + Delta-G solvation = -17138.679976 eV Core-core repulsion = 14205.523280 eV Total energy + Delta-G solvation = -2933.156697 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.58957 -40.73871 -37.82993 -37.30856 -34.90837 -32.93377 -32.23872 -29.29338 -28.97215 -25.26180 -25.08844 -23.39570 -21.42269 -20.11359 -18.55890 -18.28019 -17.52221 -17.03182 -16.56305 -16.38816 -15.91730 -15.25699 -15.13100 -14.66298 -14.61696 -14.20599 -14.14834 -13.73424 -13.65394 -13.44456 -13.37823 -13.14679 -12.82649 -12.63005 -12.48278 -12.26521 -11.89259 -11.37946 -11.27145 -10.76445 -10.59118 -10.04766 -8.31778 -8.21700 -6.30359 -0.16003 0.46155 1.36751 1.38226 1.45042 1.60246 1.92632 2.37209 2.44263 2.84497 2.89744 3.13512 3.58359 3.82756 4.08081 4.19874 4.35662 4.41720 4.49999 4.63310 4.84342 4.98693 5.06987 5.11943 5.21743 5.28897 5.34067 5.43287 5.53423 5.79043 5.86826 6.18797 6.33403 6.50960 6.63245 6.84930 7.38634 8.88470 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.021618 B = 0.006106 C = 0.005774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.923166 B = 4584.718761 C = 4848.028679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.152 3.848 3 H 0.088 0.912 4 C 0.018 3.982 5 C -0.526 4.526 6 H 0.059 0.941 7 C 0.005 3.995 8 N -0.929 5.929 9 Si 0.949 3.051 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.263 1.263 13 N -0.711 5.711 14 C 0.264 3.736 15 C -0.176 4.176 16 C -0.051 4.051 17 C 0.016 3.984 18 F -0.147 7.147 19 C -0.046 4.046 20 C -0.120 4.120 21 C 0.279 3.721 22 N -0.474 5.474 23 H 0.072 0.928 24 H 0.043 0.957 25 H 0.076 0.924 26 H 0.017 0.983 27 H -0.007 1.007 28 H 0.262 0.738 29 H 0.392 0.608 30 H 0.157 0.843 31 H 0.170 0.830 32 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.499 9.980 13.533 17.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.048 3.952 3 H 0.106 0.894 4 C -0.019 4.019 5 C -0.564 4.564 6 H 0.077 0.923 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.775 3.225 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.188 1.188 13 N -0.332 5.332 14 C 0.151 3.849 15 C -0.198 4.198 16 C -0.071 4.071 17 C -0.006 4.006 18 F -0.126 7.126 19 C -0.067 4.067 20 C -0.129 4.129 21 C -0.034 4.034 22 N -0.151 5.151 23 H 0.090 0.910 24 H 0.063 0.937 25 H 0.095 0.905 26 H 0.035 0.965 27 H 0.011 0.989 28 H 0.070 0.930 29 H 0.226 0.774 30 H 0.175 0.825 31 H 0.187 0.813 32 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -5.141 8.302 13.106 16.344 hybrid contribution 1.149 -0.496 -0.373 1.306 sum -3.993 7.805 12.733 15.459 Atomic orbital electron populations 1.22213 0.94471 1.01911 1.02975 1.21176 0.93574 0.96791 0.83642 0.89429 1.19286 0.95009 0.94704 0.92934 1.21511 0.93361 1.33803 1.07717 0.92281 1.25784 1.02582 0.95215 0.95696 1.70050 1.37278 1.36899 1.12754 0.85747 0.80882 0.78787 0.77127 1.20465 1.21189 1.18805 1.45159 1.68281 1.12470 1.07276 1.18129 0.89989 0.92273 0.84490 1.20723 1.08061 0.91137 0.99921 1.21355 0.94244 1.01699 0.89796 1.17118 1.10102 0.90223 0.83129 1.91472 1.94689 1.79458 1.46938 1.20843 0.96540 0.92704 0.96646 1.15187 1.17231 0.85428 0.95087 1.25771 0.92130 0.92750 0.92783 1.81248 1.12117 1.13364 1.08367 0.90958 0.93748 0.90524 0.96450 0.98872 0.92955 0.77389 0.82545 0.81282 0.82901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.24 9.42 71.98 0.68 -3.57 16 2 C 0.15 5.12 2.21 44.99 0.10 5.22 16 3 H 0.09 2.74 6.48 -2.38 -0.02 2.73 16 4 C 0.02 0.84 4.52 29.85 0.13 0.98 16 5 C -0.53 -27.52 8.84 25.60 0.23 -27.30 16 6 H 0.06 3.01 7.74 -2.91 -0.02 2.99 16 7 C 0.01 0.30 5.46 84.66 0.46 0.76 16 8 N -0.93 -54.51 13.29 21.45 0.28 -54.23 16 9 Si 0.95 43.74 29.54 68.60 2.03 45.77 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 12 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 13 N -0.71 -23.40 4.87 -318.23 -1.55 -24.95 16 14 C 0.26 7.18 6.64 38.63 0.26 7.44 16 15 C -0.18 -3.72 8.83 22.37 0.20 -3.52 16 16 C -0.05 -0.89 10.00 22.34 0.22 -0.66 16 17 C 0.02 0.31 7.28 22.33 0.16 0.48 16 18 F -0.15 -3.03 17.26 44.97 0.78 -2.26 16 19 C -0.05 -0.99 9.73 22.58 0.22 -0.77 16 20 C -0.12 -3.18 5.76 -21.16 -0.12 -3.30 16 21 C 0.28 8.93 14.09 88.33 1.24 10.18 16 22 N -0.47 -17.46 18.54 19.00 0.35 -17.11 16 23 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 24 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 25 H 0.08 1.65 7.70 -2.39 -0.02 1.63 16 26 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 27 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 28 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 29 H 0.39 14.66 7.46 -92.70 -0.69 13.97 16 30 H 0.16 2.91 6.10 -2.91 -0.02 2.89 16 31 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 32 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -62.08 290.05 6.13 -55.95 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: 0.46 Total: 10.89 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: 3.78 Total: -14.07 kcal Atomic # 7 Polarization: -95.37 SS G_CDS: -0.91 Total: -96.28 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.78 Total: -2.26 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -62.08 6.13 -55.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695812806.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.840 kcal (2) G-P(sol) polarization free energy of solvation -62.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds