Wall clock time and date at job start Mon Mar 30 2020 06:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 109.47674 * 2 1 4 4 C 1.52998 * 109.47095 * 120.00204 * 2 1 3 5 5 C 1.50706 * 109.47348 * 184.99906 * 4 2 1 6 6 H 1.08000 * 119.99302 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00436 * 179.72505 * 5 4 2 8 8 N 1.31515 * 119.99684 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00405 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46683 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47426 * 119.99743 * 9 7 5 12 12 H 1.48501 * 109.46833 * 239.99986 * 9 7 5 13 13 N 1.46504 * 109.46986 * 240.00014 * 2 1 3 14 14 C 1.39034 * 120.00025 * 85.00192 * 13 2 1 15 15 C 1.38830 * 120.15904 * 359.72615 * 14 13 2 16 16 C 1.38073 * 120.13565 * 179.70107 * 15 14 13 17 17 C 1.38467 * 120.46352 * 0.59583 * 16 15 14 18 18 C 1.38113 * 120.31236 * 359.67859 * 17 16 15 19 19 F 1.35093 * 120.06893 * 179.97438 * 18 17 16 20 20 C 1.39971 * 119.85177 * 0.02562 * 18 17 16 21 21 C 1.43203 * 120.22421 * 180.02562 * 20 18 17 22 22 N 4.96623 * 110.07236 * 227.57748 * 2 1 3 23 23 H 1.09000 * 109.47321 * 300.00145 * 1 2 3 24 24 H 1.08995 * 109.47138 * 60.00105 * 1 2 3 25 25 H 1.09003 * 109.47481 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47671 * 65.00115 * 4 2 1 27 27 H 1.08998 * 109.47454 * 305.00112 * 4 2 1 28 28 H 0.97004 * 120.00247 * 180.02562 * 8 7 5 29 29 H 0.97005 * 120.00236 * 264.99527 * 13 2 1 30 30 H 1.07999 * 119.92889 * 359.97438 * 15 14 13 31 31 H 1.08004 * 119.77283 * 180.29921 * 16 15 14 32 32 H 1.07991 * 119.84202 * 179.70204 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3127 6 1 4.0789 -0.0862 0.5392 7 6 4.2299 -1.1883 2.3610 8 7 3.5754 -1.8275 3.3057 9 14 6.0915 -1.0559 2.4401 10 1 6.5837 -0.2918 1.2657 11 1 6.4854 -0.3543 3.6881 12 1 6.6854 -2.4170 2.4288 13 7 2.0183 -0.6906 -1.1962 14 6 2.1511 0.0030 -2.3938 15 6 1.8165 1.3487 -2.4613 16 6 1.9544 2.0385 -3.6494 17 6 2.4147 1.3948 -4.7856 18 6 2.7476 0.0551 -4.7412 19 9 3.1956 -0.5682 -5.8529 20 6 2.6187 -0.6555 -3.5422 21 6 2.9621 -2.0446 -3.4870 22 7 3.2344 -3.1467 -3.4433 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.7516 -1.7716 1.2056 27 1 1.6053 -0.2619 2.1370 28 1 4.0594 -2.2306 4.0435 29 1 2.2490 -1.6318 -1.1527 30 1 1.4518 1.8580 -1.5816 31 1 1.6970 3.0865 -3.6940 32 1 2.5141 1.9429 -5.7108 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695813713.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:22 Heat of formation + Delta-G solvation = -4.519063 kcal Electronic energy + Delta-G solvation = -17254.011829 eV Core-core repulsion = 14321.531121 eV Total energy + Delta-G solvation = -2932.480708 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.94296 -39.57008 -36.42833 -36.12011 -33.11077 -31.76310 -30.57858 -28.28583 -27.56038 -23.86680 -23.47585 -22.18828 -20.10008 -18.90777 -17.52273 -16.68533 -16.39922 -15.69155 -15.46786 -15.01972 -14.73636 -14.39596 -13.75789 -13.23083 -13.17214 -13.02687 -12.85373 -12.54838 -12.03686 -11.92455 -11.88864 -11.56943 -11.47817 -11.22058 -10.89433 -10.70790 -10.47563 -9.97180 -9.55083 -9.22193 -8.76582 -8.51688 -7.30025 -6.14340 -4.17821 0.87762 1.51516 2.89092 3.13694 3.24292 3.33072 3.36964 3.58204 3.94808 4.09972 4.33676 4.36326 4.87698 5.15043 5.23045 5.33344 5.41895 5.56980 5.75943 5.81735 5.94415 6.07330 6.15457 6.19145 6.43110 6.45943 6.61187 6.79337 7.23360 7.40074 7.65302 7.76926 7.81715 7.95742 8.19806 8.88249 9.48381 10.96452 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.021247 B = 0.006565 C = 0.005929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.529304 B = 4264.163055 C = 4721.550648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.139 3.861 3 H 0.078 0.922 4 C 0.014 3.986 5 C -0.523 4.523 6 H 0.058 0.942 7 C 0.060 3.940 8 N -0.892 5.892 9 Si 0.890 3.110 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.284 1.284 13 N -0.693 5.693 14 C 0.307 3.693 15 C -0.214 4.214 16 C -0.014 4.014 17 C -0.234 4.234 18 C 0.193 3.807 19 F -0.134 7.134 20 C -0.167 4.167 21 C 0.261 3.739 22 N -0.425 5.425 23 H 0.065 0.935 24 H 0.049 0.951 25 H 0.054 0.946 26 H 0.022 0.978 27 H 0.036 0.964 28 H 0.262 0.738 29 H 0.405 0.595 30 H 0.140 0.860 31 H 0.134 0.866 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.733 8.890 -12.157 16.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.036 3.964 3 H 0.096 0.904 4 C -0.023 4.023 5 C -0.561 4.561 6 H 0.077 0.923 7 C -0.142 4.142 8 N -0.531 5.531 9 Si 0.718 3.282 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.210 1.210 13 N -0.312 5.312 14 C 0.190 3.810 15 C -0.237 4.237 16 C -0.034 4.034 17 C -0.255 4.255 18 C 0.170 3.830 19 F -0.113 7.113 20 C -0.178 4.178 21 C -0.053 4.053 22 N -0.102 5.102 23 H 0.084 0.916 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.040 0.960 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.241 0.759 30 H 0.157 0.843 31 H 0.152 0.848 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.354 7.127 -11.696 14.705 hybrid contribution 1.209 -0.124 0.011 1.216 sum -4.144 7.003 -11.685 14.239 Atomic orbital electron populations 1.22299 0.96788 1.02023 1.01351 1.21481 0.91849 0.97504 0.85601 0.90377 1.19428 0.96558 0.95855 0.90505 1.21185 0.91612 1.35077 1.08257 0.92334 1.24993 0.98511 0.95078 0.95598 1.69953 1.35613 1.35822 1.11737 0.86557 0.85679 0.77930 0.78052 1.19642 1.20873 1.20994 1.45295 1.66205 1.13072 1.06605 1.17614 0.87551 0.91162 0.84653 1.20745 1.10723 0.92361 0.99887 1.20860 0.92230 0.99394 0.90880 1.20635 1.11346 0.92537 1.00980 1.17292 0.94625 0.90491 0.80544 1.91500 1.86244 1.82984 1.50542 1.15353 1.20934 0.87115 0.94420 1.25246 0.93342 0.92348 0.94367 1.81218 1.10415 1.11908 1.06613 0.91647 0.93201 0.92712 0.96008 0.94543 0.92867 0.75910 0.84267 0.84773 0.84720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.39 9.41 37.15 0.35 -2.04 16 2 C 0.14 2.43 2.21 -67.93 -0.15 2.28 16 3 H 0.08 1.31 6.49 -51.93 -0.34 0.97 16 4 C 0.01 0.32 4.52 -27.88 -0.13 0.19 16 5 C -0.52 -13.69 8.84 -34.44 -0.30 -13.99 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 8 N -0.89 -25.71 13.29 55.43 0.74 -24.98 16 9 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 10 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 N -0.69 -11.88 4.87 -51.96 -0.25 -12.13 16 14 C 0.31 4.61 6.64 -83.57 -0.55 4.05 16 15 C -0.21 -2.62 8.81 -39.42 -0.35 -2.97 16 16 C -0.01 -0.14 10.02 -39.56 -0.40 -0.53 16 17 C -0.23 -2.49 10.00 -39.54 -0.40 -2.88 16 18 C 0.19 2.59 7.28 -38.98 -0.28 2.31 16 19 F -0.13 -1.90 16.81 2.25 0.04 -1.86 16 20 C -0.17 -2.57 5.76 -106.51 -0.61 -3.18 16 21 C 0.26 4.61 13.74 -22.47 -0.31 4.30 16 22 N -0.42 -8.28 18.54 41.84 0.78 -7.50 16 23 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 24 H 0.05 0.62 7.66 -51.93 -0.40 0.22 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.40 7.61 7.46 -40.82 -0.30 7.31 16 30 H 0.14 1.58 6.07 -52.49 -0.32 1.26 16 31 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 32 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 289.45 15.07 4.36 4.36 Total: -1.00 -29.17 289.45 -6.03 -35.20 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -3.44 Total: 1.51 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -3.23 Total: -10.92 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: 1.26 Total: -44.62 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.17 -6.03 -35.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695813713.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.677 kcal (2) G-P(sol) polarization free energy of solvation -29.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds