Wall clock time and date at job start Mon Mar 30 2020 06:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 109.47674 * 2 1 4 4 C 1.52998 * 109.47095 * 120.00204 * 2 1 3 5 5 C 1.50706 * 109.47348 * 184.99906 * 4 2 1 6 6 H 1.08000 * 119.99302 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00436 * 179.72505 * 5 4 2 8 8 N 1.31515 * 119.99684 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00405 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46683 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47426 * 119.99743 * 9 7 5 12 12 H 1.48501 * 109.46833 * 239.99986 * 9 7 5 13 13 N 1.46504 * 109.46986 * 240.00014 * 2 1 3 14 14 C 1.39034 * 120.00025 * 85.00192 * 13 2 1 15 15 C 1.38830 * 120.15904 * 359.72615 * 14 13 2 16 16 C 1.38073 * 120.13565 * 179.70107 * 15 14 13 17 17 C 1.38467 * 120.46352 * 0.59583 * 16 15 14 18 18 C 1.38113 * 120.31236 * 359.67859 * 17 16 15 19 19 F 1.35093 * 120.06893 * 179.97438 * 18 17 16 20 20 C 1.39971 * 119.85177 * 0.02562 * 18 17 16 21 21 C 1.43203 * 120.22421 * 180.02562 * 20 18 17 22 22 N 4.96623 * 110.07236 * 227.57748 * 2 1 3 23 23 H 1.09000 * 109.47321 * 300.00145 * 1 2 3 24 24 H 1.08995 * 109.47138 * 60.00105 * 1 2 3 25 25 H 1.09003 * 109.47481 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47671 * 65.00115 * 4 2 1 27 27 H 1.08998 * 109.47454 * 305.00112 * 4 2 1 28 28 H 0.97004 * 120.00247 * 180.02562 * 8 7 5 29 29 H 0.97005 * 120.00236 * 264.99527 * 13 2 1 30 30 H 1.07999 * 119.92889 * 359.97438 * 15 14 13 31 31 H 1.08004 * 119.77283 * 180.29921 * 16 15 14 32 32 H 1.07991 * 119.84202 * 179.70204 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3127 6 1 4.0789 -0.0862 0.5392 7 6 4.2299 -1.1883 2.3610 8 7 3.5754 -1.8275 3.3057 9 14 6.0915 -1.0559 2.4401 10 1 6.5837 -0.2918 1.2657 11 1 6.4854 -0.3543 3.6881 12 1 6.6854 -2.4170 2.4288 13 7 2.0183 -0.6906 -1.1962 14 6 2.1511 0.0030 -2.3938 15 6 1.8165 1.3487 -2.4613 16 6 1.9544 2.0385 -3.6494 17 6 2.4147 1.3948 -4.7856 18 6 2.7476 0.0551 -4.7412 19 9 3.1956 -0.5682 -5.8529 20 6 2.6187 -0.6555 -3.5422 21 6 2.9621 -2.0446 -3.4870 22 7 3.2344 -3.1467 -3.4433 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.7516 -1.7716 1.2056 27 1 1.6053 -0.2619 2.1370 28 1 4.0594 -2.2306 4.0435 29 1 2.2490 -1.6318 -1.1527 30 1 1.4518 1.8580 -1.5816 31 1 1.6970 3.0865 -3.6940 32 1 2.5141 1.9429 -5.7108 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695813713.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:22 Heat of formation + Delta-G solvation = -21.249338 kcal Electronic energy + Delta-G solvation = -17254.737308 eV Core-core repulsion = 14321.531121 eV Total energy + Delta-G solvation = -2933.206187 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.99382 -40.67138 -37.78401 -37.43231 -34.95103 -33.12561 -31.71033 -29.39711 -29.27936 -25.26986 -24.84351 -23.45399 -21.41404 -20.06921 -18.62638 -18.48102 -17.78627 -16.76403 -16.67047 -16.52951 -15.99430 -15.68328 -15.06089 -14.75083 -14.45479 -14.26126 -14.19382 -13.86314 -13.55264 -13.40304 -13.37288 -12.99788 -12.70994 -12.58184 -12.44397 -12.34433 -12.03746 -11.39446 -11.29795 -10.86127 -10.62152 -9.79723 -8.45275 -8.24021 -6.32261 -0.16396 0.53180 1.33042 1.36499 1.46489 1.54267 1.93689 2.34464 2.37120 2.85558 2.92267 3.11431 3.28753 3.98292 4.16406 4.21487 4.35626 4.47678 4.48660 4.65498 4.90925 4.97506 5.08152 5.21966 5.24848 5.31559 5.41834 5.48740 5.56635 5.77700 5.88948 6.17138 6.30481 6.47405 6.58738 6.83491 7.36947 8.86987 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.021247 B = 0.006565 C = 0.005929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.529304 B = 4264.163055 C = 4721.550648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.153 3.847 3 H 0.090 0.910 4 C 0.017 3.983 5 C -0.525 4.525 6 H 0.059 0.941 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.949 3.051 10 H -0.265 1.265 11 H -0.274 1.274 12 H -0.289 1.289 13 N -0.711 5.711 14 C 0.292 3.708 15 C -0.215 4.215 16 C 0.008 3.992 17 C -0.211 4.211 18 C 0.178 3.822 19 F -0.143 7.143 20 C -0.189 4.189 21 C 0.273 3.727 22 N -0.475 5.475 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.042 0.958 26 H -0.008 1.008 27 H 0.019 0.981 28 H 0.262 0.738 29 H 0.391 0.609 30 H 0.153 0.847 31 H 0.182 0.818 32 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.014 12.162 -13.842 19.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.049 3.951 3 H 0.108 0.892 4 C -0.020 4.020 5 C -0.563 4.563 6 H 0.077 0.923 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.775 3.225 10 H -0.189 1.189 11 H -0.200 1.200 12 H -0.215 1.215 13 N -0.330 5.330 14 C 0.178 3.822 15 C -0.237 4.237 16 C -0.011 4.011 17 C -0.232 4.232 18 C 0.156 3.844 19 F -0.121 7.121 20 C -0.200 4.200 21 C -0.040 4.040 22 N -0.153 5.153 23 H 0.092 0.908 24 H 0.096 0.904 25 H 0.061 0.939 26 H 0.010 0.990 27 H 0.038 0.962 28 H 0.071 0.929 29 H 0.224 0.776 30 H 0.171 0.829 31 H 0.199 0.801 32 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -5.635 10.435 -13.418 17.908 hybrid contribution 1.266 -1.034 0.435 1.692 sum -4.369 9.401 -12.983 16.614 Atomic orbital electron populations 1.22212 0.94339 1.01867 1.03119 1.21198 0.93658 0.96835 0.83370 0.89179 1.19305 0.95043 0.94670 0.93028 1.21571 0.93398 1.33803 1.07501 0.92325 1.25791 1.02636 0.95235 0.95688 1.70064 1.37148 1.37282 1.12548 0.85635 0.80903 0.77579 0.78409 1.18946 1.19976 1.21533 1.45191 1.67968 1.12477 1.07409 1.17844 0.88552 0.92245 0.83563 1.21049 1.10134 0.90982 1.01549 1.21390 0.89385 1.01210 0.89108 1.21110 1.08417 0.91005 1.02653 1.17562 0.95580 0.91568 0.79685 1.91483 1.86483 1.83404 1.50733 1.15590 1.22609 0.86009 0.95793 1.25816 0.92196 0.92949 0.93008 1.81197 1.12506 1.13380 1.08197 0.90787 0.90366 0.93907 0.99006 0.96237 0.92933 0.77613 0.82930 0.80055 0.81383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.28 9.41 71.98 0.68 -3.60 16 2 C 0.15 5.23 2.21 44.99 0.10 5.33 16 3 H 0.09 2.84 6.49 -2.39 -0.02 2.82 16 4 C 0.02 0.80 4.52 29.85 0.13 0.93 16 5 C -0.52 -27.82 8.84 25.60 0.23 -27.60 16 6 H 0.06 3.05 7.74 -2.91 -0.02 3.03 16 7 C 0.00 0.25 5.46 84.65 0.46 0.72 16 8 N -0.93 -54.99 13.29 21.45 0.28 -54.71 16 9 Si 0.95 44.25 29.54 68.60 2.03 46.27 16 10 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 12 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 13 N -0.71 -24.31 4.87 -318.31 -1.55 -25.86 16 14 C 0.29 8.30 6.64 38.67 0.26 8.55 16 15 C -0.21 -4.39 8.81 22.37 0.20 -4.19 16 16 C 0.01 0.12 10.02 22.29 0.22 0.34 16 17 C -0.21 -3.45 10.00 22.29 0.22 -3.23 16 18 C 0.18 4.37 7.28 22.66 0.16 4.54 16 19 F -0.14 -3.83 16.81 44.97 0.76 -3.07 16 20 C -0.19 -5.64 5.76 -21.09 -0.12 -5.77 16 21 C 0.27 9.92 13.74 88.33 1.21 11.13 16 22 N -0.48 -19.37 18.54 19.01 0.35 -19.01 16 23 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.08 1.69 7.66 -2.39 -0.02 1.67 16 25 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 26 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 27 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 29 H 0.39 15.31 7.46 -92.70 -0.69 14.62 16 30 H 0.15 2.74 6.07 -2.91 -0.02 2.72 16 31 H 0.18 0.96 8.06 -2.91 -0.02 0.93 16 32 H 0.17 1.72 8.06 -2.92 -0.02 1.69 16 Total: -1.00 -66.07 289.45 6.09 -59.99 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: 0.46 Total: 9.23 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: 3.76 Total: -12.84 kcal Atomic # 7 Polarization: -98.67 SS G_CDS: -0.91 Total: -99.58 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.76 Total: -3.07 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Total: -66.07 6.09 -59.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695813713.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.738 kcal (2) G-P(sol) polarization free energy of solvation -66.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds