Wall clock time and date at job start Mon Mar 30 2020 06:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46827 * 2 1 4 4 C 1.52998 * 109.47085 * 240.00330 * 2 1 3 5 5 C 1.50696 * 109.47302 * 174.99718 * 4 2 1 6 6 H 1.08008 * 120.00262 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00394 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00069 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00371 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47141 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47051 * 120.00126 * 9 7 5 12 12 H 1.48499 * 109.47376 * 240.00103 * 9 7 5 13 13 N 1.46493 * 109.47513 * 119.99791 * 2 1 3 14 14 C 1.39185 * 120.00246 * 275.00266 * 13 2 1 15 15 C 1.39266 * 119.90184 * 359.97438 * 14 13 2 16 16 C 1.37580 * 120.13914 * 180.02562 * 15 14 13 17 17 C 1.39862 * 119.94655 * 359.74237 * 16 15 14 18 18 C 1.43197 * 120.09371 * 180.25248 * 17 16 15 19 19 N 7.57128 * 98.46503 * 69.10168 * 2 1 3 20 20 C 1.40050 * 119.81042 * 0.52932 * 17 16 15 21 21 F 1.35104 * 120.06954 * 179.74650 * 20 17 16 22 22 C 1.37973 * 119.85915 * 359.47288 * 20 17 16 23 23 H 1.09004 * 109.46827 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46915 * 299.99834 * 1 2 3 25 25 H 1.09000 * 109.47401 * 60.00302 * 1 2 3 26 26 H 1.09007 * 109.47140 * 294.99730 * 4 2 1 27 27 H 1.09000 * 109.47403 * 54.99481 * 4 2 1 28 28 H 0.96997 * 120.00397 * 179.97438 * 8 7 5 29 29 H 0.97005 * 120.00158 * 95.00017 * 13 2 1 30 30 H 1.07996 * 119.93147 * 0.02562 * 15 14 13 31 31 H 1.07994 * 120.02481 * 180.02562 * 16 15 14 32 32 H 1.07995 * 119.97801 * 180.27373 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5418 -0.6148 -1.3128 6 1 4.0790 -0.0853 -0.5397 7 6 4.2304 -1.1933 -2.3579 8 7 3.5764 -1.8376 -3.2996 9 14 6.0920 -1.0608 -2.4370 10 1 6.5837 -0.2906 -1.2665 11 1 6.6863 -2.4216 -2.4186 12 1 6.4861 -0.3656 -3.6886 13 7 2.0184 -0.6905 1.1961 14 6 2.1513 0.0038 2.3951 15 6 1.8200 1.3551 2.4552 16 6 1.9500 2.0463 3.6376 17 6 2.4108 1.3895 4.7832 18 6 2.5422 2.1046 6.0169 19 7 2.6445 2.6713 6.9961 20 6 2.7489 0.0320 4.7189 21 9 3.1994 -0.6064 5.8211 22 6 2.6155 -0.6535 3.5290 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.7516 -1.7715 -1.2057 27 1 1.6053 -0.2617 -2.1370 28 1 4.0608 -2.2443 -4.0351 29 1 2.2491 -1.6317 1.1526 30 1 1.4602 1.8616 1.5718 31 1 1.6921 3.0941 3.6823 32 1 2.8714 -1.7015 3.4783 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695817285.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:30 Heat of formation + Delta-G solvation = -5.622119 kcal Electronic energy + Delta-G solvation = -16916.460330 eV Core-core repulsion = 13983.931790 eV Total energy + Delta-G solvation = -2932.528540 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.96370 -39.48083 -36.97969 -35.80796 -33.13346 -31.77242 -30.46629 -28.62146 -27.59801 -23.69959 -23.10677 -22.62865 -20.13358 -18.94145 -17.61216 -16.65040 -16.46594 -15.70583 -15.66134 -14.89594 -14.43531 -14.24500 -13.64989 -13.57867 -13.40478 -13.19816 -12.96445 -12.54411 -12.17850 -12.08716 -11.92676 -11.63000 -11.34964 -11.27646 -10.90686 -10.71475 -10.48331 -9.91685 -9.57147 -9.25081 -8.85673 -8.55607 -7.28680 -6.18183 -4.21867 0.99248 1.30150 2.77610 3.08247 3.20972 3.30293 3.33986 3.59024 3.90183 4.06365 4.28364 4.32469 4.78148 5.17664 5.19066 5.35537 5.45222 5.55235 5.74710 5.82986 5.92737 5.99262 6.16492 6.26205 6.30365 6.44330 6.58510 6.73705 7.23746 7.37060 7.62194 7.66813 7.78297 7.99555 8.16398 8.84744 9.44579 10.92472 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.025810 B = 0.005240 C = 0.004784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.606685 B = 5342.117738 C = 5850.996674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.138 3.862 3 H 0.076 0.924 4 C 0.015 3.985 5 C -0.523 4.523 6 H 0.059 0.941 7 C 0.060 3.940 8 N -0.893 5.893 9 Si 0.890 3.110 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.692 5.692 14 C 0.293 3.707 15 C -0.217 4.217 16 C 0.010 3.990 17 C -0.158 4.158 18 C 0.271 3.729 19 N -0.444 5.444 20 C 0.199 3.801 21 F -0.134 7.134 22 C -0.251 4.251 23 H 0.054 0.946 24 H 0.048 0.952 25 H 0.063 0.937 26 H 0.023 0.977 27 H 0.034 0.966 28 H 0.262 0.738 29 H 0.407 0.593 30 H 0.140 0.860 31 H 0.136 0.864 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.148 3.096 8.611 10.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.034 3.966 3 H 0.094 0.906 4 C -0.023 4.023 5 C -0.561 4.561 6 H 0.077 0.923 7 C -0.142 4.142 8 N -0.532 5.532 9 Si 0.718 3.282 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.311 5.311 14 C 0.178 3.822 15 C -0.240 4.240 16 C -0.012 4.012 17 C -0.166 4.166 18 C -0.042 4.042 19 N -0.121 5.121 20 C 0.176 3.824 21 F -0.112 7.112 22 C -0.275 4.275 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.082 0.918 26 H 0.041 0.959 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.243 0.757 30 H 0.157 0.843 31 H 0.153 0.847 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.031 3.916 9.737 11.638 hybrid contribution 1.268 -0.797 -0.450 1.563 sum -3.763 3.119 9.287 10.495 Atomic orbital electron populations 1.22301 0.96910 1.01962 1.01294 1.21452 0.91756 0.97528 0.85815 0.90610 1.19417 0.96491 0.95844 0.90513 1.21193 0.91612 1.34847 1.08469 0.92301 1.24997 0.98487 0.95095 0.95596 1.69951 1.35636 1.35590 1.11984 0.86556 0.85639 0.77869 0.78102 1.19659 1.21008 1.20958 1.45272 1.66263 1.13057 1.06483 1.17855 0.87317 0.91130 0.85941 1.20696 1.11104 0.93117 0.99095 1.20670 0.91766 0.99120 0.89620 1.15608 1.19459 0.91696 0.89809 1.25449 0.92832 0.93379 0.92566 1.81188 1.11013 1.09059 1.10828 1.17192 0.94066 0.88532 0.82562 1.91510 1.86115 1.81832 1.51787 1.20324 1.14331 1.01753 0.91084 0.92686 0.93284 0.91799 0.95911 0.94752 0.92863 0.75685 0.84264 0.84662 0.84172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 9.41 37.16 0.35 -1.89 16 2 C 0.14 2.23 2.21 -67.94 -0.15 2.08 16 3 H 0.08 1.22 6.46 -51.93 -0.34 0.89 16 4 C 0.01 0.31 4.52 -27.89 -0.13 0.19 16 5 C -0.52 -12.91 8.84 -34.44 -0.30 -13.21 16 6 H 0.06 1.45 7.74 -52.48 -0.41 1.04 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.89 -24.62 13.29 55.43 0.74 -23.89 16 9 Si 0.89 20.29 29.54 -169.99 -5.02 15.27 16 10 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 N -0.69 -10.21 4.94 -52.17 -0.26 -10.47 16 14 C 0.29 3.90 6.63 -83.84 -0.56 3.35 16 15 C -0.22 -2.61 8.80 -39.44 -0.35 -2.96 16 16 C 0.01 0.11 9.75 -39.21 -0.38 -0.27 16 17 C -0.16 -2.01 5.75 -106.69 -0.61 -2.63 16 18 C 0.27 3.87 14.97 -22.47 -0.34 3.53 16 19 N -0.44 -7.11 18.54 41.84 0.78 -6.34 16 20 C 0.20 2.62 7.27 -39.00 -0.28 2.34 16 21 F -0.13 -1.87 16.81 2.25 0.04 -1.83 16 22 C -0.25 -3.19 9.85 -39.38 -0.39 -3.58 16 23 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.05 0.58 7.68 -51.93 -0.40 0.18 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 27 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 29 H 0.41 6.02 8.60 -40.82 -0.35 5.67 16 30 H 0.14 1.57 6.06 -52.49 -0.32 1.25 16 31 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 291.41 15.07 4.39 4.39 Total: -1.00 -27.57 291.41 -6.05 -33.62 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -3.48 Total: 0.83 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -3.23 Total: -11.58 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: 1.25 Total: -40.70 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -27.57 -6.05 -33.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695817285.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.001 kcal (2) G-P(sol) polarization free energy of solvation -27.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds