Wall clock time and date at job start Mon Mar 30 2020 06:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46827 * 2 1 4 4 C 1.52998 * 109.47085 * 240.00330 * 2 1 3 5 5 C 1.50696 * 109.47302 * 174.99718 * 4 2 1 6 6 H 1.08008 * 120.00262 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00394 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00069 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00371 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47141 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47051 * 120.00126 * 9 7 5 12 12 H 1.48499 * 109.47376 * 240.00103 * 9 7 5 13 13 N 1.46493 * 109.47513 * 119.99791 * 2 1 3 14 14 C 1.39185 * 120.00246 * 275.00266 * 13 2 1 15 15 C 1.39266 * 119.90184 * 359.97438 * 14 13 2 16 16 C 1.37580 * 120.13914 * 180.02562 * 15 14 13 17 17 C 1.39862 * 119.94655 * 359.74237 * 16 15 14 18 18 C 1.43197 * 120.09371 * 180.25248 * 17 16 15 19 19 N 7.57128 * 98.46503 * 69.10168 * 2 1 3 20 20 C 1.40050 * 119.81042 * 0.52932 * 17 16 15 21 21 F 1.35104 * 120.06954 * 179.74650 * 20 17 16 22 22 C 1.37973 * 119.85915 * 359.47288 * 20 17 16 23 23 H 1.09004 * 109.46827 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46915 * 299.99834 * 1 2 3 25 25 H 1.09000 * 109.47401 * 60.00302 * 1 2 3 26 26 H 1.09007 * 109.47140 * 294.99730 * 4 2 1 27 27 H 1.09000 * 109.47403 * 54.99481 * 4 2 1 28 28 H 0.96997 * 120.00397 * 179.97438 * 8 7 5 29 29 H 0.97005 * 120.00158 * 95.00017 * 13 2 1 30 30 H 1.07996 * 119.93147 * 0.02562 * 15 14 13 31 31 H 1.07994 * 120.02481 * 180.02562 * 16 15 14 32 32 H 1.07995 * 119.97801 * 180.27373 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5418 -0.6148 -1.3128 6 1 4.0790 -0.0853 -0.5397 7 6 4.2304 -1.1933 -2.3579 8 7 3.5764 -1.8376 -3.2996 9 14 6.0920 -1.0608 -2.4370 10 1 6.5837 -0.2906 -1.2665 11 1 6.6863 -2.4216 -2.4186 12 1 6.4861 -0.3656 -3.6886 13 7 2.0184 -0.6905 1.1961 14 6 2.1513 0.0038 2.3951 15 6 1.8200 1.3551 2.4552 16 6 1.9500 2.0463 3.6376 17 6 2.4108 1.3895 4.7832 18 6 2.5422 2.1046 6.0169 19 7 2.6445 2.6713 6.9961 20 6 2.7489 0.0320 4.7189 21 9 3.1994 -0.6064 5.8211 22 6 2.6155 -0.6535 3.5290 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.7516 -1.7715 -1.2057 27 1 1.6053 -0.2617 -2.1370 28 1 4.0608 -2.2443 -4.0351 29 1 2.2491 -1.6317 1.1526 30 1 1.4602 1.8616 1.5718 31 1 1.6921 3.0941 3.6823 32 1 2.8714 -1.7015 3.4783 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695817285.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:29 Heat of formation + Delta-G solvation = -20.023185 kcal Electronic energy + Delta-G solvation = -16917.084807 eV Core-core repulsion = 13983.931790 eV Total energy + Delta-G solvation = -2933.153017 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.02610 -40.52912 -38.17489 -37.03407 -34.86498 -33.09341 -31.50545 -29.74441 -29.20594 -25.24397 -24.09394 -23.93795 -21.42220 -19.98873 -18.70863 -18.41587 -17.70508 -16.83497 -16.76751 -16.44186 -15.86118 -15.27109 -14.85399 -14.69554 -14.54049 -14.35913 -14.32137 -13.67857 -13.56742 -13.40397 -13.37527 -13.08073 -12.69640 -12.58382 -12.36296 -12.28702 -11.97449 -11.29913 -11.21642 -10.79020 -10.54596 -9.83745 -8.38449 -8.16547 -6.24435 -0.04937 0.34640 1.40343 1.44854 1.54042 1.65610 2.00374 2.42769 2.46105 2.88379 2.98635 3.19181 3.27044 3.85357 4.17779 4.30166 4.35358 4.47327 4.54674 4.72234 4.89064 5.02760 5.06250 5.17211 5.30842 5.32995 5.38670 5.50782 5.59676 5.77623 5.85909 6.25568 6.44465 6.52381 6.82915 6.92021 7.45121 8.94211 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.025810 B = 0.005240 C = 0.004784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.606685 B = 5342.117738 C = 5850.996674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.152 3.848 3 H 0.080 0.920 4 C 0.018 3.982 5 C -0.522 4.522 6 H 0.060 0.940 7 C 0.007 3.993 8 N -0.930 5.930 9 Si 0.949 3.051 10 H -0.266 1.266 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.700 5.700 14 C 0.284 3.716 15 C -0.216 4.216 16 C 0.025 3.975 17 C -0.159 4.159 18 C 0.287 3.713 19 N -0.478 5.478 20 C 0.191 3.809 21 F -0.141 7.141 22 C -0.248 4.248 23 H 0.049 0.951 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.002 0.998 27 H 0.012 0.988 28 H 0.261 0.739 29 H 0.405 0.595 30 H 0.152 0.848 31 H 0.166 0.834 32 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.222 4.170 9.357 11.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.047 3.953 3 H 0.098 0.902 4 C -0.019 4.019 5 C -0.560 4.560 6 H 0.078 0.922 7 C -0.191 4.191 8 N -0.571 5.571 9 Si 0.775 3.225 10 H -0.190 1.190 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.320 5.320 14 C 0.171 3.829 15 C -0.239 4.239 16 C 0.004 3.996 17 C -0.167 4.167 18 C -0.026 4.026 19 N -0.155 5.155 20 C 0.168 3.832 21 F -0.120 7.120 22 C -0.272 4.272 23 H 0.069 0.931 24 H 0.091 0.909 25 H 0.086 0.914 26 H 0.021 0.979 27 H 0.030 0.970 28 H 0.070 0.930 29 H 0.240 0.760 30 H 0.169 0.831 31 H 0.183 0.817 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.102 5.007 10.516 12.715 hybrid contribution 1.277 -1.127 -0.649 1.822 sum -3.825 3.880 9.867 11.271 Atomic orbital electron populations 1.22211 0.94668 1.02141 1.02613 1.21129 0.93404 0.96716 0.84010 0.90159 1.19286 0.94900 0.95115 0.92602 1.21577 0.93347 1.33370 1.07693 0.92181 1.25745 1.02340 0.95309 0.95708 1.70061 1.37080 1.37159 1.12818 0.85641 0.81181 0.77632 0.78024 1.18988 1.21090 1.21005 1.45116 1.67352 1.12966 1.06585 1.17981 0.87812 0.91715 0.85400 1.20879 1.10620 0.92528 0.99843 1.20932 0.90039 1.00322 0.88320 1.15734 1.19724 0.91457 0.89775 1.25619 0.91889 0.92649 0.92426 1.81207 1.12274 1.10245 1.11787 1.17293 0.94577 0.88790 0.82509 1.91496 1.86301 1.82037 1.52141 1.20382 1.13818 1.02233 0.90756 0.93137 0.90926 0.91442 0.97946 0.96975 0.93030 0.75995 0.83059 0.81678 0.83385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.92 9.41 71.98 0.68 -3.25 16 2 C 0.15 4.67 2.21 44.99 0.10 4.77 16 3 H 0.08 2.40 6.46 -2.38 -0.02 2.39 16 4 C 0.02 0.79 4.52 29.85 0.13 0.93 16 5 C -0.52 -25.57 8.84 25.60 0.23 -25.35 16 6 H 0.06 2.88 7.74 -2.91 -0.02 2.86 16 7 C 0.01 0.37 5.46 84.65 0.46 0.83 16 8 N -0.93 -52.02 13.29 21.45 0.28 -51.74 16 9 Si 0.95 41.50 29.54 68.60 2.03 43.52 16 10 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 12 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 13 N -0.70 -19.57 4.94 -318.97 -1.58 -21.15 16 14 C 0.28 6.92 6.63 38.42 0.25 7.17 16 15 C -0.22 -4.48 8.80 22.36 0.20 -4.28 16 16 C 0.03 0.47 9.75 22.51 0.22 0.69 16 17 C -0.16 -3.66 5.75 -21.20 -0.12 -3.78 16 18 C 0.29 7.64 14.97 88.33 1.32 8.97 16 19 N -0.48 -14.68 18.54 19.00 0.35 -14.32 16 20 C 0.19 4.67 7.27 22.65 0.16 4.84 16 21 F -0.14 -3.76 16.81 44.97 0.76 -3.01 16 22 C -0.25 -5.85 9.85 22.40 0.22 -5.63 16 23 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 24 H 0.07 1.48 7.68 -2.39 -0.02 1.46 16 25 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.00 0.10 8.14 -2.38 -0.02 0.08 16 27 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 29 H 0.40 11.64 8.60 -92.70 -0.80 10.84 16 30 H 0.15 2.82 6.06 -2.91 -0.02 2.80 16 31 H 0.17 2.10 8.06 -2.91 -0.02 2.08 16 32 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -58.44 291.41 6.05 -52.38 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: 0.35 Total: 8.41 kcal Atomic # 6 Polarization: -17.96 SS G_CDS: 3.86 Total: -14.10 kcal Atomic # 7 Polarization: -86.27 SS G_CDS: -0.94 Total: -87.21 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.76 Total: -3.01 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.52 kcal Total: -58.44 6.05 -52.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695817285.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.359 kcal (2) G-P(sol) polarization free energy of solvation -58.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds