Wall clock time and date at job start Mon Mar 30 2020 06:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46950 * 2 1 4 4 C 1.53000 * 109.47096 * 119.99661 * 2 1 3 5 5 C 1.50702 * 109.47240 * 185.00261 * 4 2 1 6 6 H 1.08006 * 119.99866 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00293 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99727 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00127 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47328 * 60.00163 * 9 7 5 11 11 H 1.48498 * 109.47123 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47189 * 300.00074 * 9 7 5 13 13 N 1.46502 * 109.47427 * 240.00200 * 2 1 3 14 14 C 1.39178 * 120.00343 * 84.99579 * 13 2 1 15 15 C 1.39273 * 119.90339 * 0.02595 * 14 13 2 16 16 C 1.37574 * 120.14065 * 179.71927 * 15 14 13 17 17 C 1.39865 * 119.94688 * 0.50981 * 16 15 14 18 18 C 1.43205 * 120.09345 * 179.76798 * 17 16 15 19 19 N 7.57130 * 98.59301 * 290.94010 * 2 1 3 20 20 C 1.40050 * 119.80912 * 359.49282 * 17 16 15 21 21 F 1.35100 * 120.06915 * 180.27489 * 20 17 16 22 22 C 1.37974 * 119.85582 * 0.24806 * 20 17 16 23 23 H 1.09001 * 109.46891 * 60.00096 * 1 2 3 24 24 H 1.09002 * 109.46950 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46892 * 300.00162 * 1 2 3 26 26 H 1.09001 * 109.47225 * 305.00037 * 4 2 1 27 27 H 1.08995 * 109.46987 * 65.00284 * 4 2 1 28 28 H 0.96996 * 119.99648 * 179.97438 * 8 7 5 29 29 H 0.96994 * 119.99544 * 264.99981 * 13 2 1 30 30 H 1.08001 * 119.92743 * 359.97438 * 15 14 13 31 31 H 1.08005 * 120.02519 * 180.27717 * 16 15 14 32 32 H 1.07999 * 119.97189 * 179.97438 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3128 6 1 4.0790 -0.0860 0.5392 7 6 4.2305 -1.1933 2.3579 8 7 3.5764 -1.8376 3.2996 9 14 6.0921 -1.0620 2.4362 10 1 6.4855 0.3687 2.4959 11 1 6.5871 -1.7619 3.6488 12 1 6.6839 -1.6880 1.2265 13 7 2.0184 -0.6906 -1.1962 14 6 2.1513 0.0037 -2.3951 15 6 1.8199 1.3551 -2.4553 16 6 1.9549 2.0475 -3.6364 17 6 2.4157 1.3907 -4.7820 18 6 2.5527 2.1072 -6.0144 19 7 2.6613 2.6755 -6.9919 20 6 2.7483 0.0317 -4.7191 21 9 3.1993 -0.6065 -5.8211 22 6 2.6150 -0.6536 -3.5291 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.6054 -0.2616 2.1370 27 1 1.7517 -1.7714 1.2056 28 1 4.0609 -2.2449 4.0346 29 1 2.2491 -1.6317 -1.1526 30 1 1.4601 1.8615 -1.5718 31 1 1.7016 3.0965 -3.6799 32 1 2.8706 -1.7017 -3.4785 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695817286.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:32 Heat of formation + Delta-G solvation = -5.533730 kcal Electronic energy + Delta-G solvation = -16916.094201 eV Core-core repulsion = 13983.569494 eV Total energy + Delta-G solvation = -2932.524707 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.96475 -39.48137 -36.98024 -35.80902 -33.13180 -31.77191 -30.46614 -28.62134 -27.59572 -23.69746 -23.10625 -22.62717 -20.13240 -18.94118 -17.61221 -16.64938 -16.46168 -15.70630 -15.66036 -14.89573 -14.44230 -14.24470 -13.64959 -13.57846 -13.40277 -13.19737 -12.96392 -12.54473 -12.17771 -12.07897 -11.92493 -11.62855 -11.34462 -11.27723 -10.89370 -10.73402 -10.48150 -9.92264 -9.56892 -9.27183 -8.85708 -8.54595 -7.28702 -6.17712 -4.21574 0.99233 1.30142 2.77668 3.08260 3.23690 3.29327 3.31903 3.59000 3.90182 4.06348 4.28373 4.32596 4.78105 5.17672 5.19318 5.35519 5.45225 5.55293 5.74740 5.83003 5.92767 5.99240 6.16537 6.26216 6.30360 6.44379 6.58572 6.73700 7.23878 7.36956 7.62199 7.66880 7.78359 7.99594 8.16590 8.84463 9.44691 10.92883 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.025774 B = 0.005242 C = 0.004786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.100988 B = 5339.698251 C = 5848.589318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.138 3.862 3 H 0.076 0.924 4 C 0.015 3.985 5 C -0.525 4.525 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.893 5.893 9 Si 0.892 3.108 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.692 5.692 14 C 0.293 3.707 15 C -0.217 4.217 16 C 0.010 3.990 17 C -0.158 4.158 18 C 0.272 3.728 19 N -0.444 5.444 20 C 0.199 3.801 21 F -0.134 7.134 22 C -0.251 4.251 23 H 0.048 0.952 24 H 0.054 0.946 25 H 0.063 0.937 26 H 0.034 0.966 27 H 0.023 0.977 28 H 0.263 0.737 29 H 0.407 0.593 30 H 0.140 0.860 31 H 0.136 0.864 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.153 3.074 -8.586 10.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.034 3.966 3 H 0.094 0.906 4 C -0.022 4.022 5 C -0.563 4.563 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.719 3.281 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.202 1.202 13 N -0.311 5.311 14 C 0.178 3.822 15 C -0.240 4.240 16 C -0.012 4.012 17 C -0.166 4.166 18 C -0.042 4.042 19 N -0.121 5.121 20 C 0.177 3.823 21 F -0.112 7.112 22 C -0.275 4.275 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.052 0.948 27 H 0.041 0.959 28 H 0.073 0.927 29 H 0.243 0.757 30 H 0.157 0.843 31 H 0.153 0.847 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.026 3.892 -9.700 11.598 hybrid contribution 1.270 -0.784 0.424 1.552 sum -3.756 3.108 -9.276 10.479 Atomic orbital electron populations 1.22300 0.96907 1.01962 1.01295 1.21456 0.91761 0.97528 0.85815 0.90609 1.19406 0.96448 0.95834 0.90504 1.21117 0.91613 1.35058 1.08478 0.92418 1.24993 0.98477 0.95078 0.95581 1.69934 1.35826 1.35431 1.11983 0.86661 0.85557 0.78375 0.77465 1.20170 1.21291 1.20205 1.45272 1.66255 1.13063 1.06482 1.17852 0.87317 0.91133 0.85942 1.20697 1.11096 0.93103 0.99116 1.20671 0.91748 0.99133 0.89625 1.15610 1.19503 0.91608 0.89853 1.25448 0.92830 0.93380 0.92568 1.81183 1.11013 1.09049 1.10840 1.17191 0.94074 0.88524 0.82559 1.91509 1.86090 1.81844 1.51800 1.20322 1.14352 1.01767 0.91062 0.93283 0.92684 0.91798 0.94758 0.95921 0.92746 0.75684 0.84265 0.84661 0.84178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 9.41 37.16 0.35 -1.89 16 2 C 0.14 2.23 2.21 -67.93 -0.15 2.08 16 3 H 0.08 1.22 6.46 -51.93 -0.34 0.89 16 4 C 0.02 0.33 4.52 -27.88 -0.13 0.20 16 5 C -0.52 -12.95 8.84 -34.44 -0.30 -13.25 16 6 H 0.06 1.41 7.74 -52.48 -0.41 1.01 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.89 -24.64 13.29 55.43 0.74 -23.91 16 9 Si 0.89 20.31 29.54 -169.99 -5.02 15.29 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 13 N -0.69 -10.22 4.94 -52.17 -0.26 -10.48 16 14 C 0.29 3.90 6.63 -83.85 -0.56 3.35 16 15 C -0.22 -2.61 8.80 -39.44 -0.35 -2.96 16 16 C 0.01 0.11 9.74 -39.22 -0.38 -0.27 16 17 C -0.16 -2.01 5.75 -106.68 -0.61 -2.63 16 18 C 0.27 3.87 14.97 -22.47 -0.34 3.53 16 19 N -0.44 -7.11 18.54 41.83 0.78 -6.34 16 20 C 0.20 2.63 7.27 -39.00 -0.28 2.34 16 21 F -0.13 -1.87 16.81 2.25 0.04 -1.83 16 22 C -0.25 -3.20 9.85 -39.38 -0.39 -3.59 16 23 H 0.05 0.58 7.68 -51.93 -0.40 0.18 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.41 6.03 8.60 -40.82 -0.35 5.68 16 30 H 0.14 1.57 6.06 -52.49 -0.32 1.25 16 31 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 32 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 291.41 15.07 4.39 4.39 Total: -1.00 -27.50 291.41 -6.05 -33.55 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -3.48 Total: 0.91 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: -3.23 Total: -11.59 kcal Atomic # 7 Polarization: -41.97 SS G_CDS: 1.25 Total: -40.72 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -27.50 -6.05 -33.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695817286.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.019 kcal (2) G-P(sol) polarization free energy of solvation -27.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds