Wall clock time and date at job start Mon Mar 30 2020 06:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86804 * 119.99781 * 2 1 4 4 H 1.48498 * 109.47439 * 270.00358 * 3 2 1 5 5 H 1.48500 * 109.46947 * 30.00748 * 3 2 1 6 6 H 1.48504 * 109.46747 * 150.00193 * 3 2 1 7 7 C 1.39886 * 120.00347 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00182 * 197.92313 * 7 2 1 9 9 C 1.41217 * 119.99987 * 17.91925 * 7 2 1 10 10 C 1.40839 * 120.18103 * 204.54516 * 9 7 2 11 11 C 1.36435 * 119.81174 * 180.02562 * 10 9 7 12 12 C 1.39313 * 120.18218 * 0.02562 * 11 10 9 13 13 O 1.35679 * 119.81220 * 180.02562 * 12 11 10 14 14 C 1.42905 * 116.99519 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.46875 * 179.97438 * 14 13 12 16 16 O 1.42904 * 109.47064 * 64.99843 * 15 14 13 17 17 C 1.42897 * 113.99895 * 179.97438 * 16 15 14 18 18 C 1.53000 * 117.50087 * 218.62105 * 17 16 15 19 19 C 1.52997 * 60.00355 * 252.51133 * 18 17 16 20 20 C 1.39310 * 120.36885 * 0.27401 * 12 11 10 21 21 C 1.36433 * 120.18374 * 359.44450 * 20 12 11 22 22 H 0.96997 * 120.00116 * 359.97438 * 1 2 3 23 23 H 1.08001 * 120.08912 * 0.02562 * 10 9 7 24 24 H 1.07997 * 119.91047 * 179.97438 * 11 10 9 25 25 H 1.08999 * 109.47039 * 299.99136 * 14 13 12 26 26 H 1.08997 * 109.47342 * 60.00386 * 14 13 12 27 27 H 1.08995 * 109.47239 * 184.99820 * 15 14 13 28 28 H 1.09002 * 109.47263 * 305.00515 * 15 14 13 29 29 H 1.09004 * 115.55429 * 4.33750 * 17 16 15 30 30 H 1.09000 * 117.49759 * 0.02562 * 18 17 16 31 31 H 1.09001 * 117.50050 * 145.02193 * 18 17 16 32 32 H 1.09000 * 117.50303 * 252.50950 * 19 18 17 33 33 H 1.09002 * 117.51748 * 107.47334 * 19 18 17 34 34 H 1.08000 * 119.90718 * 179.69872 * 20 12 11 35 35 H 1.08003 * 120.09700 * 180.27312 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.4902 2.0466 -1.4000 5 1 1.4402 2.6526 0.7002 6 1 3.5403 1.4402 0.7000 7 6 2.0083 -1.2114 -0.0005 8 1 3.0489 -1.2342 0.2873 9 6 1.3536 -2.4046 -0.3774 10 6 1.8265 -3.6480 0.0850 11 6 1.1886 -4.7962 -0.2842 12 6 0.0728 -4.7409 -1.1165 13 8 -0.5562 -5.8873 -1.4785 14 6 -1.6937 -5.7607 -2.3341 15 6 -2.2648 -7.1485 -2.6320 16 8 -2.7627 -7.7280 -1.4243 17 6 -3.3217 -9.0322 -1.5928 18 6 -4.5773 -9.3722 -0.7873 19 6 -3.2331 -9.9972 -0.4086 20 6 -0.3977 -3.5155 -1.5833 21 6 0.2253 -2.3577 -1.2189 22 1 -0.4850 0.8400 0.0004 23 1 2.6917 -3.6925 0.7300 24 1 1.5501 -5.7506 0.0691 25 1 -2.4530 -5.1531 -1.8417 26 1 -1.3951 -5.2832 -3.2674 27 1 -3.0764 -7.0602 -3.3541 28 1 -1.4802 -7.7838 -3.0431 29 1 -3.2357 -9.4549 -2.5938 30 1 -4.9772 -8.6008 -0.1292 31 1 -5.3179 -10.0184 -1.2585 32 1 -3.0893 -11.0546 -0.6307 33 1 -2.7481 -9.6372 0.4987 34 1 -1.2604 -3.4817 -2.2321 35 1 -0.1433 -1.4082 -1.5780 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711746880.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:51 Heat of formation + Delta-G solvation = -38.010705 kcal Electronic energy + Delta-G solvation = -17020.521562 eV Core-core repulsion = 14177.756102 eV Total energy + Delta-G solvation = -2842.765461 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.96600 -38.28423 -36.40606 -34.93533 -33.29868 -30.09272 -29.56354 -28.59258 -24.78177 -22.97657 -22.50116 -22.00818 -20.95998 -20.21613 -17.39371 -17.29264 -16.97819 -15.63444 -15.16588 -15.14847 -14.58121 -14.25734 -13.90964 -13.67064 -13.00136 -12.60865 -12.34442 -11.89955 -11.82851 -11.65738 -11.56737 -11.27232 -11.13185 -10.99868 -10.79300 -10.61806 -10.49329 -9.86631 -9.74781 -9.33967 -9.13775 -8.98260 -7.61565 -6.97097 -6.69459 -4.21796 2.80003 3.00225 3.10162 3.13702 3.24446 3.45044 3.73448 3.97432 4.11965 4.64842 4.67889 4.84615 4.95991 5.20108 5.30089 5.37388 5.50515 5.53590 5.68717 5.75408 5.80072 5.94575 6.03340 6.15577 6.32418 6.75958 6.92981 7.10282 7.23287 7.31843 7.45323 7.59848 7.94720 8.03686 8.19319 8.48874 8.69113 8.93550 9.03229 10.25317 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.050789 B = 0.003790 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.166058 B = 7386.485804 C = 7545.116708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.075 3.925 3 Si 0.907 3.093 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.464 4.464 8 H 0.077 0.923 9 C 0.086 3.914 10 C -0.196 4.196 11 C -0.113 4.113 12 C -0.007 4.007 13 O -0.322 6.322 14 C 0.069 3.931 15 C 0.068 3.932 16 O -0.345 6.345 17 C 0.016 3.984 18 C -0.192 4.192 19 C -0.185 4.185 20 C -0.175 4.175 21 C -0.134 4.134 22 H 0.279 0.721 23 H 0.099 0.901 24 H 0.096 0.904 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.108 0.892 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.394 -11.296 -5.045 13.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.494 4.494 8 H 0.095 0.905 9 C 0.084 3.916 10 C -0.215 4.215 11 C -0.132 4.132 12 C -0.050 4.050 13 O -0.238 6.238 14 C -0.008 4.008 15 C -0.008 4.008 16 O -0.263 6.263 17 C -0.042 4.042 18 C -0.229 4.229 19 C -0.222 4.222 20 C -0.194 4.194 21 C -0.153 4.153 22 H 0.090 0.910 23 H 0.118 0.882 24 H 0.115 0.885 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.126 0.874 30 H 0.118 0.882 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.112 0.888 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.528 -11.214 -4.792 13.832 hybrid contribution 0.086 0.896 -0.275 0.941 sum -6.443 -10.318 -5.067 13.177 Atomic orbital electron populations 1.69844 1.07509 1.28998 1.36341 1.25870 0.94702 1.01187 0.92428 0.86330 0.80485 0.80769 0.79202 1.19400 1.20436 1.18684 1.19471 0.98117 0.91240 1.40593 0.90502 1.17596 0.91865 0.92165 0.89953 1.20597 1.03192 0.92230 1.05505 1.19613 0.95668 0.97664 1.00279 1.18596 0.97543 0.83912 1.04974 1.85867 1.41981 1.30672 1.65275 1.22470 0.88630 0.95048 0.94621 1.22651 0.97079 0.94237 0.86854 1.87986 1.77884 1.28826 1.31590 1.22639 0.99535 0.86062 0.96001 1.23384 0.91531 1.03591 1.04437 1.23321 1.00309 0.98094 1.00470 1.20614 1.01497 0.92935 1.04373 1.20939 0.98543 0.96440 0.99409 0.91035 0.88237 0.88542 0.92170 0.91465 0.91711 0.92276 0.87437 0.88166 0.88458 0.88349 0.87977 0.88796 0.86131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.04 10.96 55.54 0.61 -20.43 16 2 C 0.07 1.90 5.13 -17.34 -0.09 1.81 16 3 Si 0.91 18.92 29.60 -169.99 -5.03 13.89 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.46 -12.50 9.04 -37.83 -0.34 -12.85 16 8 H 0.08 1.99 7.91 -52.49 -0.41 1.57 16 9 C 0.09 2.35 5.57 -106.80 -0.60 1.76 16 10 C -0.20 -4.94 9.74 -39.25 -0.38 -5.33 16 11 C -0.11 -2.74 9.92 -39.83 -0.40 -3.13 16 12 C -0.01 -0.17 6.71 -38.78 -0.26 -0.43 16 13 O -0.32 -6.92 10.09 -23.59 -0.24 -7.16 16 14 C 0.07 1.15 5.11 37.16 0.19 1.34 16 15 C 0.07 0.92 6.19 37.16 0.23 1.15 16 16 O -0.34 -5.34 10.56 -40.08 -0.42 -5.76 16 17 C 0.02 0.19 6.44 -26.73 -0.17 0.01 16 18 C -0.19 -1.94 10.48 -26.73 -0.28 -2.22 16 19 C -0.18 -1.95 10.48 -26.73 -0.28 -2.23 16 20 C -0.18 -4.22 8.96 -39.83 -0.36 -4.58 16 21 C -0.13 -3.54 8.64 -39.25 -0.34 -3.88 16 22 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 23 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 24 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 25 H 0.06 1.04 7.66 -51.93 -0.40 0.64 16 26 H 0.07 1.02 7.64 -51.93 -0.40 0.62 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.11 0.98 7.93 -51.93 -0.41 0.57 16 30 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.09 2.00 6.27 -52.49 -0.33 1.67 16 35 H 0.12 3.26 6.16 -52.48 -0.32 2.94 16 LS Contribution 301.78 15.07 4.55 4.55 Total: -1.00 -29.82 301.78 -8.40 -38.21 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -4.79 Total: 5.27 kcal Atomic # 6 Polarization: -25.50 SS G_CDS: -3.07 Total: -28.57 kcal Atomic # 7 Polarization: -21.04 SS G_CDS: 0.61 Total: -20.43 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: -0.66 Total: -12.92 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.82 -8.40 -38.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711746880.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.203 kcal (2) G-P(sol) polarization free energy of solvation -29.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds