Wall clock time and date at job start Mon Mar 30 2020 06:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46734 * 2 1 4 4 C 1.53004 * 109.47161 * 240.00641 * 2 1 3 5 5 C 1.50701 * 109.47211 * 175.00101 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31523 * 119.99908 * 179.72112 * 7 5 4 9 9 Si 1.86800 * 120.00405 * 359.71709 * 7 5 4 10 10 H 1.48500 * 109.47210 * 90.00069 * 9 7 5 11 11 H 1.48504 * 109.47424 * 210.00300 * 9 7 5 12 12 H 1.48502 * 109.46888 * 330.00390 * 9 7 5 13 13 N 1.46500 * 109.47481 * 120.00080 * 2 1 3 14 14 C 1.39694 * 120.00002 * 275.00160 * 13 2 1 15 15 C 1.38986 * 119.98738 * 359.72125 * 14 13 2 16 16 C 1.38425 * 120.20799 * 179.76353 * 15 14 13 17 17 F 1.35103 * 119.90855 * 180.27825 * 16 15 14 18 18 C 1.38245 * 120.18103 * 0.51394 * 16 15 14 19 19 C 1.39617 * 119.96905 * 359.74372 * 18 16 15 20 20 C 1.43201 * 120.10198 * 180.02562 * 19 18 16 21 21 N 7.23312 * 106.63565 * 99.53958 * 2 1 3 22 22 C 1.38635 * 119.98516 * 179.97438 * 14 13 2 23 23 H 1.09001 * 109.47261 * 59.99525 * 1 2 3 24 24 H 1.09000 * 109.46927 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46944 * 299.99471 * 1 2 3 26 26 H 1.09000 * 109.47211 * 54.99128 * 4 2 1 27 27 H 1.09007 * 109.46376 * 294.99670 * 4 2 1 28 28 H 0.96995 * 120.00181 * 179.97438 * 8 7 5 29 29 H 0.96997 * 119.99537 * 95.00208 * 13 2 1 30 30 H 1.08000 * 119.89336 * 0.02562 * 15 14 13 31 31 H 1.07998 * 120.01856 * 179.76767 * 18 16 15 32 32 H 1.08005 * 120.09049 * 359.97438 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5419 -0.6148 -1.3128 6 1 4.0789 -0.0854 -0.5396 7 6 4.2298 -1.1880 -2.3612 8 7 5.5401 -1.0905 -2.4195 9 14 3.3009 -2.1031 -3.6988 10 1 2.9338 -1.1567 -4.7827 11 1 4.1620 -3.1793 -4.2519 12 1 2.0685 -2.7009 -3.1252 13 7 2.0184 -0.6906 1.1961 14 6 2.1518 0.0063 2.3995 15 6 1.8266 1.3562 2.4602 16 6 1.9524 2.0500 3.6514 17 9 1.6293 3.3607 3.7050 18 6 2.4125 1.4065 4.7852 19 6 2.7464 0.0519 4.7314 20 6 3.2227 -0.6175 5.9042 21 7 3.6007 -1.1486 6.8345 22 6 2.6135 -0.6477 3.5313 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.6052 -0.2616 -2.1370 27 1 1.7516 -1.7714 -1.2057 28 1 6.0241 -1.4941 -3.1568 29 1 2.2491 -1.6317 1.1525 30 1 1.4706 1.8644 1.5762 31 1 2.5132 1.9513 5.7123 32 1 2.8700 -1.6958 3.4844 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718638622.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:34 Heat of formation + Delta-G solvation = -15.018020 kcal Electronic energy + Delta-G solvation = -16946.461905 eV Core-core repulsion = 14013.525928 eV Total energy + Delta-G solvation = -2932.935977 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.84504 -40.59349 -38.27832 -37.09628 -34.80511 -33.10872 -31.90294 -29.80991 -29.19033 -25.31611 -24.70079 -23.23973 -21.64792 -20.00606 -18.84902 -17.65654 -17.49512 -17.16581 -16.57358 -16.43358 -16.26241 -15.79340 -15.01653 -14.80817 -14.52742 -14.43614 -14.27681 -13.76925 -13.68612 -13.50960 -13.34594 -12.92735 -12.81451 -12.56602 -12.43190 -12.10833 -11.72462 -11.46965 -11.30092 -10.85390 -10.72389 -9.81304 -8.36466 -8.22628 -6.25964 -0.27336 0.40397 1.40482 1.42457 1.52078 1.53993 1.90586 2.40053 2.41437 2.84773 2.85384 3.14773 3.41158 4.04395 4.12732 4.15351 4.20143 4.33812 4.47723 4.64492 4.80042 4.99533 5.06752 5.10880 5.17169 5.22377 5.23167 5.34332 5.50675 5.70604 5.75223 6.32182 6.36325 6.46681 6.83224 6.90748 7.38483 8.93714 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.023827 B = 0.005478 C = 0.004988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.848114 B = 5109.873153 C = 5612.022975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.157 3.843 3 H 0.065 0.935 4 C -0.021 4.021 5 C -0.514 4.514 6 H 0.035 0.965 7 C 0.003 3.997 8 N -0.954 5.954 9 Si 0.945 3.055 10 H -0.271 1.271 11 H -0.295 1.295 12 H -0.240 1.240 13 N -0.714 5.714 14 C 0.250 3.750 15 C -0.218 4.218 16 C 0.145 3.855 17 F -0.138 7.138 18 C -0.171 4.171 19 C 0.045 3.955 20 C 0.285 3.715 21 N -0.452 5.452 22 C -0.160 4.160 23 H 0.072 0.928 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.036 0.964 27 H 0.030 0.970 28 H 0.262 0.738 29 H 0.406 0.594 30 H 0.142 0.858 31 H 0.156 0.844 32 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.004 3.204 8.779 15.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.052 3.948 3 H 0.083 0.917 4 C -0.058 4.058 5 C -0.552 4.552 6 H 0.054 0.946 7 C -0.193 4.193 8 N -0.595 5.595 9 Si 0.770 3.230 10 H -0.196 1.196 11 H -0.221 1.221 12 H -0.164 1.164 13 N -0.338 5.338 14 C 0.142 3.858 15 C -0.242 4.242 16 C 0.125 3.875 17 F -0.117 7.117 18 C -0.194 4.194 19 C 0.041 3.959 20 C -0.030 4.030 21 N -0.128 5.128 22 C -0.185 4.185 23 H 0.090 0.910 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.054 0.946 27 H 0.048 0.952 28 H 0.071 0.929 29 H 0.242 0.758 30 H 0.160 0.840 31 H 0.174 0.826 32 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -11.374 2.472 9.912 15.289 hybrid contribution 0.347 -0.270 -1.254 1.329 sum -11.027 2.202 8.658 14.192 Atomic orbital electron populations 1.22228 0.94230 1.02663 1.02585 1.20908 0.93516 0.96198 0.84134 0.91660 1.19855 0.94291 0.96965 0.94730 1.21353 0.92114 1.33706 1.08021 0.94637 1.25967 0.95398 0.97228 1.00715 1.70083 1.08748 1.47294 1.33357 0.85737 0.79416 0.78509 0.79360 1.19630 1.22125 1.16360 1.44922 1.69946 1.12726 1.06228 1.17392 0.91411 0.90570 0.86467 1.20874 1.10800 0.93989 0.98574 1.17000 0.98749 0.77919 0.93879 1.91503 1.90306 1.32800 1.97068 1.20781 1.06080 0.93382 0.99188 1.15176 1.01385 0.92089 0.87242 1.25579 0.92560 0.92445 0.92376 1.81254 1.10128 1.09566 1.11819 1.20690 1.06255 1.01358 0.90246 0.90951 0.92088 0.91739 0.94607 0.95177 0.92891 0.75819 0.84028 0.82583 0.83675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.75 9.43 71.98 0.68 -3.07 16 2 C 0.16 4.89 2.21 44.99 0.10 4.99 16 3 H 0.07 2.16 6.46 -2.38 -0.02 2.15 16 4 C -0.02 -0.81 3.58 29.85 0.11 -0.70 16 5 C -0.51 -26.42 9.39 25.60 0.24 -26.18 16 6 H 0.04 2.06 7.99 -2.91 -0.02 2.04 16 7 C 0.00 0.18 5.47 84.65 0.46 0.64 16 8 N -0.95 -57.44 13.96 21.45 0.30 -57.15 16 9 Si 0.95 41.08 27.46 68.60 1.88 42.97 16 10 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 11 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.24 -9.34 6.55 99.48 0.65 -8.69 16 13 N -0.71 -20.88 4.96 -319.10 -1.58 -22.47 16 14 C 0.25 6.63 6.63 38.16 0.25 6.88 16 15 C -0.22 -5.56 8.83 22.49 0.20 -5.36 16 16 C 0.14 3.40 7.29 22.32 0.16 3.56 16 17 F -0.14 -3.32 17.26 44.97 0.78 -2.55 16 18 C -0.17 -3.58 9.73 22.60 0.22 -3.36 16 19 C 0.05 1.01 5.73 -21.38 -0.12 0.89 16 20 C 0.29 6.98 15.33 88.33 1.35 8.33 16 21 N -0.45 -12.87 18.54 19.00 0.35 -12.52 16 22 C -0.16 -3.78 9.60 22.68 0.22 -3.56 16 23 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.06 1.36 7.73 -2.38 -0.02 1.34 16 26 H 0.04 1.36 7.56 -2.39 -0.02 1.35 16 27 H 0.03 1.14 7.21 -2.38 -0.02 1.12 16 28 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 29 H 0.41 11.76 8.61 -92.71 -0.80 10.96 16 30 H 0.14 3.58 6.11 -2.91 -0.02 3.56 16 31 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 32 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -61.07 288.55 5.90 -55.17 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 0.30 Total: 13.47 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: 3.87 Total: -16.94 kcal Atomic # 7 Polarization: -91.20 SS G_CDS: -0.93 Total: -92.13 kcal Atomic # 9 Polarization: -3.32 SS G_CDS: 0.78 Total: -2.55 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 1.88 Total: 42.97 kcal Total: -61.07 5.90 -55.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718638622.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.155 kcal (2) G-P(sol) polarization free energy of solvation -61.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds