Wall clock time and date at job start Mon Mar 30 2020 06:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47566 * 2 1 4 4 H 1.08997 * 109.47383 * 54.84074 * 3 2 1 5 5 C 1.50702 * 109.47586 * 174.84457 * 3 2 1 6 6 H 1.07994 * 120.00255 * 119.99378 * 5 3 2 7 7 C 1.37884 * 119.99348 * 299.99916 * 5 3 2 8 8 N 1.31512 * 120.00219 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99521 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47305 * 89.99583 * 9 7 5 11 11 H 1.48496 * 109.47136 * 209.99787 * 9 7 5 12 12 H 1.48504 * 109.47353 * 329.99812 * 9 7 5 13 13 N 1.46504 * 109.46473 * 294.84128 * 3 2 1 14 14 C 1.39698 * 119.99665 * 157.86278 * 13 3 2 15 15 C 1.38986 * 119.98893 * 355.08386 * 14 13 3 16 16 C 1.38417 * 120.21017 * 179.76725 * 15 14 13 17 17 F 1.35108 * 119.90939 * 180.27874 * 16 15 14 18 18 C 1.38250 * 120.18049 * 0.51001 * 16 15 14 19 19 C 1.39609 * 119.97194 * 359.74318 * 18 16 15 20 20 C 1.43199 * 120.10446 * 180.02562 * 19 18 16 21 21 N 8.26949 * 84.54087 * 324.09698 * 2 1 3 22 22 C 1.38639 * 119.98662 * 175.35913 * 14 13 3 23 23 H 1.09001 * 109.47397 * 175.45289 * 1 2 3 24 24 H 1.09000 * 109.47151 * 295.45567 * 1 2 3 25 25 H 1.09000 * 109.47057 * 55.45336 * 1 2 3 26 26 H 1.09007 * 109.46830 * 119.99688 * 2 1 3 27 27 H 1.09001 * 109.47462 * 239.99368 * 2 1 3 28 28 H 0.96994 * 119.99797 * 180.02562 * 8 7 5 29 29 H 0.96997 * 120.00086 * 337.86069 * 13 3 2 30 30 H 1.07998 * 119.89656 * 0.02562 * 15 14 13 31 31 H 1.08004 * 120.01233 * 179.76857 * 18 16 15 32 32 H 1.08000 * 120.09083 * 359.97438 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6033 1.9823 0.8401 5 6 3.5416 1.4444 0.1277 6 1 4.1489 1.8881 -0.6473 7 6 4.1401 0.8794 1.2340 8 7 3.4005 0.3394 2.1779 9 14 6.0013 0.8824 1.3926 10 1 6.4362 2.1160 2.0956 11 1 6.4339 -0.3079 2.1680 12 1 6.6135 0.8415 0.0403 13 7 1.6557 2.0962 -1.2535 14 6 1.5826 3.4896 -1.3207 15 6 1.7743 4.2514 -0.1741 16 6 1.7076 5.6326 -0.2363 17 9 1.9005 6.3674 0.8810 18 6 1.4396 6.2620 -1.4376 19 6 1.2406 5.5040 -2.5930 20 6 0.9634 6.1531 -3.8390 21 7 0.7432 6.6680 -4.8274 22 6 1.3133 4.1119 -2.5299 23 1 -0.3634 -1.0244 -0.0815 24 1 -0.3633 0.4417 0.9279 25 1 -0.3633 0.5828 -0.8465 26 1 1.8932 -0.5138 0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 3.8215 -0.0577 2.9563 29 1 1.4520 1.5615 -2.0368 30 1 1.9799 3.7643 0.7677 31 1 1.3845 7.3397 -1.4823 32 1 1.1602 3.5208 -3.4208 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718642228.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:58 Heat of formation + Delta-G solvation = -0.339137 kcal Electronic energy + Delta-G solvation = -17235.155851 eV Core-core repulsion = 14302.856398 eV Total energy + Delta-G solvation = -2932.299453 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.52956 -39.18417 -36.81326 -35.69174 -32.93215 -31.57411 -30.55809 -28.65910 -26.64415 -23.97184 -23.05639 -21.87842 -20.14745 -18.68240 -16.71165 -16.26480 -16.01740 -15.81164 -15.24852 -15.09804 -14.70049 -13.98059 -13.74737 -13.29609 -13.19279 -13.07198 -12.78948 -12.26189 -12.18671 -11.83310 -11.54200 -11.40627 -11.20386 -11.00261 -10.82486 -10.29297 -10.09681 -9.99338 -9.88822 -9.03023 -8.56237 -8.49462 -6.93354 -6.17598 -4.30110 1.01258 1.69580 2.72291 3.16610 3.20944 3.28627 3.31731 3.80926 4.11485 4.22671 4.36403 4.75203 5.08880 5.29689 5.33862 5.55626 5.73739 5.98077 6.05837 6.09638 6.26267 6.41884 6.45088 6.58515 6.67261 6.80718 6.89659 7.09084 7.29305 7.52927 7.54626 7.72956 8.02331 8.09531 8.45982 8.77162 9.38467 10.82438 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.020420 B = 0.006644 C = 0.005949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.865393 B = 4213.253528 C = 4705.256087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.129 4.129 3 C 0.269 3.731 4 H 0.043 0.957 5 C -0.531 4.531 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.888 5.888 9 Si 0.895 3.105 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.715 5.715 14 C 0.269 3.731 15 C -0.195 4.195 16 C 0.144 3.856 17 F -0.139 7.139 18 C -0.191 4.191 19 C 0.036 3.964 20 C 0.270 3.730 21 N -0.433 5.433 22 C -0.179 4.179 23 H 0.036 0.964 24 H 0.046 0.954 25 H 0.039 0.961 26 H 0.108 0.892 27 H 0.039 0.961 28 H 0.265 0.735 29 H 0.390 0.610 30 H 0.152 0.848 31 H 0.131 0.869 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.308 3.872 -3.636 6.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.061 0.939 5 C -0.569 4.569 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.526 5.526 9 Si 0.723 3.277 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.336 5.336 14 C 0.157 3.843 15 C -0.219 4.219 16 C 0.124 3.876 17 F -0.118 7.118 18 C -0.215 4.215 19 C 0.032 3.968 20 C -0.045 4.045 21 N -0.108 5.108 22 C -0.205 4.205 23 H 0.055 0.945 24 H 0.065 0.935 25 H 0.058 0.942 26 H 0.126 0.874 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.224 0.776 30 H 0.170 0.830 31 H 0.149 0.851 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.561 4.429 -4.730 7.924 hybrid contribution 1.161 -0.371 0.463 1.304 sum -3.400 4.058 -4.267 6.800 Atomic orbital electron populations 1.21834 0.98692 0.99484 1.00541 1.21867 0.92195 0.99263 1.03454 1.18897 0.94357 0.89430 0.80627 0.93909 1.21536 0.91312 1.38317 1.05771 0.92054 1.24900 0.98461 0.94785 0.95469 1.69829 1.35179 1.38166 1.09462 0.86528 0.85210 0.77702 0.78247 1.20452 1.21151 1.19903 1.45558 1.71062 1.01327 1.15654 1.17311 0.90019 0.85478 0.91493 1.20999 1.08814 0.91470 1.00657 1.17067 0.99827 0.88764 0.81983 1.91490 1.92576 1.77090 1.50630 1.20507 1.10430 0.99948 0.90647 1.15208 1.03514 0.91787 0.86285 1.25715 0.93155 0.92918 0.92747 1.81201 1.09514 1.08909 1.11180 1.20503 1.10328 0.92305 0.97383 0.94521 0.93503 0.94222 0.87389 0.94263 0.92533 0.77605 0.83043 0.85108 0.85379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.85 37.15 0.37 -2.13 16 2 C -0.13 -2.59 5.30 -26.74 -0.14 -2.73 16 3 C 0.27 5.64 1.68 -69.08 -0.12 5.53 16 4 H 0.04 0.99 6.44 -51.93 -0.33 0.66 16 5 C -0.53 -12.79 8.70 -34.44 -0.30 -13.09 16 6 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 7 C 0.07 1.65 5.29 -17.82 -0.09 1.56 16 8 N -0.89 -22.70 11.29 55.43 0.63 -22.08 16 9 Si 0.90 19.88 29.54 -169.99 -5.02 14.86 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 13 N -0.72 -12.38 4.65 -53.33 -0.25 -12.63 16 14 C 0.27 4.40 6.58 -83.85 -0.55 3.85 16 15 C -0.19 -3.37 9.15 -39.24 -0.36 -3.73 16 16 C 0.14 2.26 7.29 -39.51 -0.29 1.97 16 17 F -0.14 -2.24 17.26 2.25 0.04 -2.21 16 18 C -0.19 -2.64 9.73 -39.07 -0.38 -3.02 16 19 C 0.04 0.50 5.73 -106.97 -0.61 -0.12 16 20 C 0.27 3.80 15.33 -22.47 -0.34 3.45 16 21 N -0.43 -6.74 18.54 41.84 0.78 -5.96 16 22 C -0.18 -2.51 9.60 -38.95 -0.37 -2.88 16 23 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.04 0.61 7.61 -51.93 -0.40 0.21 16 26 H 0.11 2.50 5.95 -51.92 -0.31 2.19 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 29 H 0.39 5.95 8.56 -40.82 -0.35 5.60 16 30 H 0.15 2.95 6.18 -52.49 -0.32 2.62 16 31 H 0.13 1.55 8.06 -52.48 -0.42 1.13 16 32 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 288.24 15.07 4.34 4.34 Total: -1.00 -24.72 288.24 -6.05 -30.77 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -3.37 Total: 4.24 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -3.20 Total: -11.34 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: 1.15 Total: -40.67 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -24.72 -6.05 -30.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718642228.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.435 kcal (2) G-P(sol) polarization free energy of solvation -24.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds