Wall clock time and date at job start Mon Mar 30 2020 05:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47083 * 2 1 4 4 H 1.08995 * 109.47321 * 305.22112 * 3 2 1 5 5 C 1.50701 * 109.46763 * 65.22060 * 3 2 1 6 6 H 1.08004 * 119.99800 * 54.84533 * 5 3 2 7 7 C 1.37875 * 120.00383 * 234.83828 * 5 3 2 8 8 N 1.31511 * 120.00280 * 176.56713 * 7 5 3 9 9 Si 1.86800 * 119.99617 * 356.56094 * 7 5 3 10 10 H 1.48501 * 109.47154 * 85.78461 * 9 7 5 11 11 H 1.48501 * 109.47294 * 205.78347 * 9 7 5 12 12 H 1.48503 * 109.47394 * 325.78713 * 9 7 5 13 13 C 1.53001 * 109.46879 * 185.21918 * 3 2 1 14 14 C 1.50703 * 112.84844 * 55.58518 * 13 3 2 15 15 O 1.20826 * 119.99858 * 8.62054 * 14 13 3 16 16 O 1.34227 * 119.99490 * 188.62403 * 14 13 3 17 17 C 1.53773 * 113.61800 * 284.27327 * 13 3 2 18 18 C 1.53776 * 87.08446 * 220.02352 * 17 13 3 19 19 F 1.39907 * 113.61298 * 270.88366 * 18 17 13 20 20 F 1.39900 * 113.62122 * 139.98132 * 18 17 13 21 21 C 1.53779 * 87.08202 * 25.43188 * 18 17 13 22 22 H 1.09002 * 109.47058 * 294.48267 * 1 2 3 23 23 H 1.08997 * 109.47424 * 54.48477 * 1 2 3 24 24 H 1.09000 * 109.47354 * 174.48318 * 1 2 3 25 25 H 1.09007 * 109.47197 * 240.00515 * 2 1 3 26 26 H 1.08999 * 109.47092 * 120.00366 * 2 1 3 27 27 H 0.97001 * 119.99651 * 180.02562 * 8 7 5 28 28 H 0.96699 * 116.99760 * 180.02562 * 16 14 13 29 29 H 1.09004 * 113.61162 * 334.56924 * 17 13 3 30 30 H 1.08995 * 113.61524 * 105.46901 * 17 13 3 31 31 H 1.09002 * 113.61573 * 220.02167 * 21 18 17 32 32 H 1.09002 * 113.61452 * 89.11752 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6023 1.9826 -0.8395 5 6 1.6459 2.1145 1.2900 6 1 1.9192 1.6702 2.2358 7 6 0.9367 3.2966 1.2630 8 7 0.5344 3.8479 2.3872 9 14 0.5475 4.1151 -0.3704 10 1 -0.7017 3.5376 -0.9282 11 1 0.3684 5.5745 -0.1625 12 1 1.6664 3.8838 -1.3190 13 6 3.5644 1.4445 -0.1312 14 6 4.0481 0.6954 -1.3462 15 8 3.2559 0.3090 -2.1727 16 8 5.3589 0.4574 -1.5099 17 6 4.2948 1.0566 1.1652 18 6 5.3144 2.1570 0.8271 19 9 6.3790 1.7109 0.0366 20 9 5.7340 2.8935 1.9401 21 6 4.1942 2.8388 0.0239 22 1 -0.3633 0.4259 0.9353 23 1 -0.3634 0.5970 -0.8364 24 1 -0.3634 -1.0229 -0.0988 25 1 1.8934 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 0.0352 4.6794 2.3681 28 1 5.6212 -0.0264 -2.3050 29 1 3.7183 1.2581 2.0681 30 1 4.7149 0.0511 1.1456 31 1 4.5331 3.2720 -0.9171 32 1 3.5902 3.5274 0.6148 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720375883.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:12 Heat of formation + Delta-G solvation = -175.912043 kcal Electronic energy + Delta-G solvation = -19807.199054 eV Core-core repulsion = 16404.224213 eV Total energy + Delta-G solvation = -3402.974841 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.21514 -46.53300 -40.37971 -37.57609 -35.81823 -33.77970 -31.96888 -27.95557 -25.90053 -25.71621 -23.13335 -21.81091 -20.08684 -18.77123 -17.68269 -17.11620 -16.71439 -15.99085 -15.70580 -15.54539 -15.04237 -14.28045 -13.68784 -13.47955 -13.38574 -12.99063 -12.88065 -12.72648 -12.21612 -11.86950 -11.79771 -11.69100 -11.25138 -11.04777 -10.87283 -10.80253 -10.34613 -10.14061 -9.93764 -9.81433 -9.69391 -9.31079 -8.96587 -8.71415 -6.24098 -4.25907 2.53437 3.18875 3.28930 3.31869 3.44003 4.05370 4.27804 4.33822 4.73662 4.95086 4.96429 5.15893 5.70426 5.90015 5.98617 6.03462 6.07928 6.15334 6.28583 6.38073 6.58369 6.73547 6.75106 6.79012 6.88787 7.09817 7.20497 7.26023 7.61281 8.27637 8.36071 8.79545 9.37340 10.87225 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.020880 B = 0.011956 C = 0.009461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.651054 B = 2341.317094 C = 2958.734009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.117 4.117 3 C 0.043 3.957 4 H 0.048 0.952 5 C -0.509 4.509 6 H 0.082 0.918 7 C 0.081 3.919 8 N -0.888 5.888 9 Si 0.863 3.137 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.263 1.263 13 C -0.073 4.073 14 C 0.491 3.509 15 O -0.508 6.508 16 O -0.505 6.505 17 C -0.131 4.131 18 C 0.247 3.753 19 F -0.172 7.172 20 F -0.194 7.194 21 C -0.135 4.135 22 H 0.066 0.934 23 H 0.039 0.961 24 H 0.031 0.969 25 H 0.050 0.950 26 H 0.047 0.953 27 H 0.267 0.733 28 H 0.396 0.604 29 H 0.140 0.860 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.300 -4.365 -4.892 9.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.154 4.154 3 C 0.024 3.976 4 H 0.066 0.934 5 C -0.546 4.546 6 H 0.100 0.900 7 C -0.123 4.123 8 N -0.524 5.524 9 Si 0.690 3.310 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.188 1.188 13 C -0.075 4.075 14 C 0.334 3.666 15 O -0.396 6.396 16 O -0.315 6.315 17 C -0.169 4.169 18 C 0.211 3.789 19 F -0.153 7.153 20 F -0.175 7.175 21 C -0.172 4.172 22 H 0.085 0.915 23 H 0.058 0.942 24 H 0.050 0.950 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.253 0.747 29 H 0.158 0.842 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 6.897 -4.075 -4.658 9.266 hybrid contribution 0.112 0.275 -1.429 1.460 sum 7.009 -3.800 -6.087 10.030 Atomic orbital electron populations 1.21584 0.96467 0.98830 1.02303 1.21666 0.96026 0.97916 0.99824 1.19044 0.85121 0.94884 0.98595 0.93415 1.20843 1.35324 1.06847 0.91592 0.89988 1.25050 0.94818 0.96670 0.95756 1.69871 1.37003 1.19446 1.26092 0.87082 0.79973 0.78793 0.85117 1.19784 1.21415 1.18814 1.22076 1.01559 0.94622 0.89222 1.23443 0.79517 0.76515 0.87154 1.90626 1.55922 1.48923 1.44101 1.84835 1.27146 1.71377 1.48166 1.24099 0.94467 0.97663 1.00627 1.22269 0.82793 0.93265 0.80609 1.93023 1.59174 1.89511 1.73574 1.92981 1.92142 1.78499 1.53876 1.24104 0.94516 0.97495 1.01117 0.91472 0.94160 0.94966 0.93116 0.93378 0.92319 0.74702 0.84166 0.90108 0.90422 0.84230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 9.64 37.16 0.36 -2.29 16 2 C -0.12 -2.34 5.06 -26.73 -0.14 -2.48 16 3 C 0.04 0.92 1.17 -91.77 -0.11 0.81 16 4 H 0.05 1.11 4.73 -51.93 -0.25 0.86 16 5 C -0.51 -12.25 5.72 -34.44 -0.20 -12.45 16 6 H 0.08 2.11 6.77 -52.48 -0.36 1.76 16 7 C 0.08 2.07 5.14 -17.82 -0.09 1.98 16 8 N -0.89 -24.59 13.96 55.43 0.77 -23.82 16 9 Si 0.86 20.06 26.78 -169.99 -4.55 15.51 16 10 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 12 H -0.26 -5.91 6.70 56.52 0.38 -5.53 16 13 C -0.07 -1.39 0.89 -154.85 -0.14 -1.53 16 14 C 0.49 8.80 7.05 36.01 0.25 9.05 16 15 O -0.51 -10.15 14.98 -18.75 -0.28 -10.43 16 16 O -0.50 -7.34 9.96 -39.25 -0.39 -7.73 16 17 C -0.13 -2.30 6.54 -25.93 -0.17 -2.47 16 18 C 0.25 4.40 3.26 -25.92 -0.08 4.31 16 19 F -0.17 -2.97 14.19 2.25 0.03 -2.94 16 20 F -0.19 -3.64 17.41 2.25 0.04 -3.60 16 21 C -0.13 -2.52 6.81 -25.92 -0.18 -2.69 16 22 H 0.07 1.41 7.57 -51.93 -0.39 1.02 16 23 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 1.01 5.64 -51.93 -0.29 0.72 16 26 H 0.05 0.93 8.10 -51.93 -0.42 0.50 16 27 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.40 3.85 9.10 45.56 0.41 4.26 16 29 H 0.14 2.63 5.96 -51.93 -0.31 2.32 16 30 H 0.08 1.27 8.10 -51.93 -0.42 0.85 16 31 H 0.08 1.34 8.09 -51.93 -0.42 0.92 16 32 H 0.14 2.85 6.54 -51.93 -0.34 2.51 16 LS Contribution 264.67 15.07 3.99 3.99 Total: -1.00 -28.00 264.67 -3.66 -31.67 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -2.79 Total: 5.11 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -0.49 Total: -7.75 kcal Atomic # 7 Polarization: -24.59 SS G_CDS: 0.77 Total: -23.82 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.67 Total: -18.16 kcal Atomic # 9 Polarization: -6.61 SS G_CDS: 0.07 Total: -6.54 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.55 Total: 15.51 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -28.00 -3.66 -31.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720375883.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.245 kcal (2) G-P(sol) polarization free energy of solvation -28.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds