Wall clock time and date at job start Mon Mar 30 2020 05:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47083 * 2 1 4 4 H 1.08995 * 109.47321 * 305.22112 * 3 2 1 5 5 C 1.50701 * 109.46763 * 65.22060 * 3 2 1 6 6 H 1.08004 * 119.99800 * 54.84533 * 5 3 2 7 7 C 1.37875 * 120.00383 * 234.83828 * 5 3 2 8 8 N 1.31511 * 120.00280 * 176.56713 * 7 5 3 9 9 Si 1.86800 * 119.99617 * 356.56094 * 7 5 3 10 10 H 1.48501 * 109.47154 * 85.78461 * 9 7 5 11 11 H 1.48501 * 109.47294 * 205.78347 * 9 7 5 12 12 H 1.48503 * 109.47394 * 325.78713 * 9 7 5 13 13 C 1.53001 * 109.46879 * 185.21918 * 3 2 1 14 14 C 1.50703 * 112.84844 * 55.58518 * 13 3 2 15 15 O 1.20826 * 119.99858 * 8.62054 * 14 13 3 16 16 O 1.34227 * 119.99490 * 188.62403 * 14 13 3 17 17 C 1.53773 * 113.61800 * 284.27327 * 13 3 2 18 18 C 1.53776 * 87.08446 * 220.02352 * 17 13 3 19 19 F 1.39907 * 113.61298 * 270.88366 * 18 17 13 20 20 F 1.39900 * 113.62122 * 139.98132 * 18 17 13 21 21 C 1.53779 * 87.08202 * 25.43188 * 18 17 13 22 22 H 1.09002 * 109.47058 * 294.48267 * 1 2 3 23 23 H 1.08997 * 109.47424 * 54.48477 * 1 2 3 24 24 H 1.09000 * 109.47354 * 174.48318 * 1 2 3 25 25 H 1.09007 * 109.47197 * 240.00515 * 2 1 3 26 26 H 1.08999 * 109.47092 * 120.00366 * 2 1 3 27 27 H 0.97001 * 119.99651 * 180.02562 * 8 7 5 28 28 H 0.96699 * 116.99760 * 180.02562 * 16 14 13 29 29 H 1.09004 * 113.61162 * 334.56924 * 17 13 3 30 30 H 1.08995 * 113.61524 * 105.46901 * 17 13 3 31 31 H 1.09002 * 113.61573 * 220.02167 * 21 18 17 32 32 H 1.09002 * 113.61452 * 89.11752 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6023 1.9826 -0.8395 5 6 1.6459 2.1145 1.2900 6 1 1.9192 1.6702 2.2358 7 6 0.9367 3.2966 1.2630 8 7 0.5344 3.8479 2.3872 9 14 0.5475 4.1151 -0.3704 10 1 -0.7017 3.5376 -0.9282 11 1 0.3684 5.5745 -0.1625 12 1 1.6664 3.8838 -1.3190 13 6 3.5644 1.4445 -0.1312 14 6 4.0481 0.6954 -1.3462 15 8 3.2559 0.3090 -2.1727 16 8 5.3589 0.4574 -1.5099 17 6 4.2948 1.0566 1.1652 18 6 5.3144 2.1570 0.8271 19 9 6.3790 1.7109 0.0366 20 9 5.7340 2.8935 1.9401 21 6 4.1942 2.8388 0.0239 22 1 -0.3633 0.4259 0.9353 23 1 -0.3634 0.5970 -0.8364 24 1 -0.3634 -1.0229 -0.0988 25 1 1.8934 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 0.0352 4.6794 2.3681 28 1 5.6212 -0.0264 -2.3050 29 1 3.7183 1.2581 2.0681 30 1 4.7149 0.0511 1.1456 31 1 4.5331 3.2720 -0.9171 32 1 3.5902 3.5274 0.6148 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720375883.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:11 Heat of formation + Delta-G solvation = -192.847762 kcal Electronic energy + Delta-G solvation = -19807.933442 eV Core-core repulsion = 16404.224213 eV Total energy + Delta-G solvation = -3403.709229 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.65855 -47.97628 -41.81322 -39.05318 -37.15775 -35.45942 -33.84514 -29.63636 -27.44181 -27.30118 -24.77991 -23.26041 -21.67573 -20.35295 -19.05872 -18.94590 -18.14650 -17.42258 -17.18566 -17.00596 -16.44244 -16.17727 -15.22178 -15.10619 -14.86783 -14.67245 -14.43230 -14.16551 -13.88705 -13.43594 -13.25347 -13.17578 -12.94325 -12.67708 -12.46559 -12.36251 -12.06259 -11.65147 -11.59110 -11.40186 -11.36838 -10.95610 -10.70647 -10.67598 -8.24067 -6.25846 1.13221 1.32767 1.39884 1.44440 2.12019 2.35377 2.59750 2.88268 3.10209 3.30105 3.46237 3.59620 4.29701 4.38390 4.45168 4.56612 4.61474 4.62429 4.75065 4.87628 4.99091 5.05503 5.21061 5.27878 5.44475 5.50103 5.59878 5.62480 5.81125 6.36342 6.81321 7.08056 7.39393 8.90609 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.020880 B = 0.011956 C = 0.009461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.651054 B = 2341.317094 C = 2958.734009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.114 4.114 3 C 0.041 3.959 4 H 0.034 0.966 5 C -0.486 4.486 6 H 0.060 0.940 7 C 0.038 3.962 8 N -0.934 5.934 9 Si 0.903 3.097 10 H -0.275 1.275 11 H -0.291 1.291 12 H -0.249 1.249 13 C -0.080 4.080 14 C 0.504 3.496 15 O -0.530 6.530 16 O -0.494 6.494 17 C -0.123 4.123 18 C 0.256 3.744 19 F -0.164 7.164 20 F -0.201 7.201 21 C -0.139 4.139 22 H 0.045 0.955 23 H 0.033 0.967 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.265 0.735 28 H 0.422 0.578 29 H 0.125 0.875 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.594 -5.495 -6.333 12.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.151 4.151 3 C 0.022 3.978 4 H 0.052 0.948 5 C -0.523 4.523 6 H 0.078 0.922 7 C -0.161 4.161 8 N -0.574 5.574 9 Si 0.730 3.270 10 H -0.200 1.200 11 H -0.217 1.217 12 H -0.173 1.173 13 C -0.082 4.082 14 C 0.347 3.653 15 O -0.420 6.420 16 O -0.307 6.307 17 C -0.161 4.161 18 C 0.220 3.780 19 F -0.145 7.145 20 F -0.181 7.181 21 C -0.177 4.177 22 H 0.064 0.936 23 H 0.052 0.948 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.283 0.717 29 H 0.143 0.857 30 H 0.123 0.877 31 H 0.112 0.888 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 8.230 -5.226 -6.126 11.514 hybrid contribution -0.205 0.542 -0.984 1.142 sum 8.025 -4.683 -7.110 11.700 Atomic orbital electron populations 1.21559 0.96305 1.00350 1.00822 1.21630 0.96202 0.96848 1.00465 1.18958 0.87110 0.95384 0.96330 0.94807 1.20922 1.33464 1.05947 0.92000 0.92217 1.25555 0.95344 0.97567 0.97637 1.69977 1.39234 1.20269 1.27901 0.86417 0.80031 0.77825 0.82754 1.20023 1.21729 1.17333 1.21847 0.99926 0.95463 0.90954 1.22884 0.80339 0.75961 0.86137 1.90631 1.56790 1.49929 1.44663 1.84740 1.24846 1.71350 1.49744 1.23992 0.93979 0.98964 0.99182 1.22077 0.82726 0.92944 0.80248 1.93037 1.58783 1.89356 1.73313 1.92974 1.92184 1.78719 1.54264 1.24058 0.94741 0.97163 1.01779 0.93609 0.94788 0.92154 0.92343 0.92691 0.92602 0.71686 0.85721 0.87700 0.88811 0.86287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.05 9.64 71.98 0.69 -4.36 16 2 C -0.11 -4.37 5.06 30.59 0.15 -4.22 16 3 C 0.04 1.73 1.17 -11.54 -0.01 1.72 16 4 H 0.03 1.52 4.73 -2.39 -0.01 1.51 16 5 C -0.49 -23.51 5.72 25.60 0.15 -23.36 16 6 H 0.06 3.14 6.77 -2.91 -0.02 3.12 16 7 C 0.04 1.97 5.14 84.65 0.44 2.41 16 8 N -0.93 -53.09 13.96 21.45 0.30 -52.80 16 9 Si 0.90 41.27 26.78 68.60 1.84 43.11 16 10 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 12 H -0.25 -10.70 6.70 99.48 0.67 -10.03 16 13 C -0.08 -2.89 0.89 -52.40 -0.05 -2.94 16 14 C 0.50 16.42 7.05 71.24 0.50 16.92 16 15 O -0.53 -19.61 14.98 21.96 0.33 -19.28 16 16 O -0.49 -12.30 9.96 -51.39 -0.51 -12.81 16 17 C -0.12 -4.10 6.54 31.12 0.20 -3.90 16 18 C 0.26 8.57 3.26 31.12 0.10 8.67 16 19 F -0.16 -5.12 14.19 44.97 0.64 -4.48 16 20 F -0.20 -7.25 17.41 44.97 0.78 -6.46 16 21 C -0.14 -4.98 6.81 31.12 0.21 -4.77 16 22 H 0.04 1.91 7.57 -2.39 -0.02 1.89 16 23 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.06 2.19 5.64 -2.38 -0.01 2.17 16 26 H 0.05 2.02 8.10 -2.39 -0.02 2.00 16 27 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 28 H 0.42 6.24 9.10 -74.06 -0.67 5.57 16 29 H 0.12 4.60 5.96 -2.38 -0.01 4.58 16 30 H 0.10 2.96 8.10 -2.39 -0.02 2.94 16 31 H 0.09 3.00 8.09 -2.39 -0.02 2.98 16 32 H 0.12 4.81 6.54 -2.39 -0.02 4.79 16 Total: -1.00 -58.87 264.67 6.21 -52.66 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.45 Total: 13.89 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: 2.39 Total: -13.83 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: 0.30 Total: -52.80 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -0.18 Total: -32.10 kcal Atomic # 9 Polarization: -12.37 SS G_CDS: 1.42 Total: -10.95 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 1.84 Total: 43.11 kcal Total: -58.87 6.21 -52.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720375883.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.186 kcal (2) G-P(sol) polarization free energy of solvation -58.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds