Wall clock time and date at job start Mon Mar 30 2020 05:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31513 * 119.99969 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 119.99840 * 359.97438 * 7 5 3 10 10 H 1.48497 * 109.47167 * 89.99961 * 9 7 5 11 11 H 1.48500 * 109.47028 * 210.00109 * 9 7 5 12 12 H 1.48497 * 109.47377 * 330.00144 * 9 7 5 13 13 O 1.45198 * 109.46884 * 294.99515 * 3 2 1 14 14 C 1.34232 * 116.99973 * 90.00459 * 13 3 2 15 15 O 1.20828 * 120.00187 * 359.97438 * 14 13 3 16 16 C 1.50697 * 120.00321 * 180.02562 * 14 13 3 17 17 H 1.09000 * 115.54779 * 325.66670 * 16 14 13 18 18 C 1.53001 * 117.50411 * 111.37588 * 16 14 13 19 19 C 1.52998 * 60.00265 * 107.48993 * 18 16 14 20 20 H 1.09002 * 117.52014 * 252.52250 * 19 18 16 21 21 C 1.52994 * 117.49579 * 107.48795 * 19 18 16 22 22 F 1.39900 * 109.47464 * 231.37595 * 21 19 18 23 23 F 1.39900 * 109.47440 * 351.38146 * 21 19 18 24 24 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 26 26 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 27 27 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 28 28 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 29 29 H 0.96999 * 119.99716 * 179.97438 * 8 7 5 30 30 H 1.08997 * 117.50103 * 214.98664 * 18 16 14 31 31 H 1.09008 * 117.49627 * 359.97438 * 18 16 14 32 32 H 1.09009 * 109.46854 * 111.38181 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 5.4539 0.8806 1.3364 9 14 3.0963 0.1102 2.5707 10 1 2.8744 -1.3258 2.2647 11 1 3.7941 0.2362 3.8755 12 1 1.7881 0.8095 2.6395 13 8 1.6559 2.0916 -1.2407 14 6 0.4727 2.7254 -1.2561 15 8 -0.2193 2.7370 -0.2657 16 6 0.0069 3.4214 -2.5089 17 1 0.7913 3.8795 -3.1115 18 6 -1.1917 2.8214 -3.2465 19 6 -1.3506 4.1257 -2.4627 20 1 -1.9066 4.0859 -1.5260 21 6 -1.5033 5.4186 -3.2663 22 9 -0.5804 6.3647 -2.8076 23 9 -1.2687 5.1566 -4.6204 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 5.8769 0.4828 2.1133 30 1 -1.1960 2.8843 -4.3347 31 1 -1.6432 1.9228 -2.8258 32 1 -2.5142 5.8069 -3.1412 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000802218512.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:16 Heat of formation + Delta-G solvation = -166.699878 kcal Electronic energy + Delta-G solvation = -18495.035968 eV Core-core repulsion = 15092.460596 eV Total energy + Delta-G solvation = -3402.575372 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.11948 -47.10708 -40.13174 -37.39988 -35.61630 -33.62660 -31.95329 -28.20894 -27.58128 -24.75895 -22.79342 -21.57120 -20.73593 -19.65232 -18.26116 -17.26269 -17.21004 -16.93694 -16.34155 -15.82857 -15.62347 -14.68162 -14.04705 -13.82030 -13.51816 -13.39894 -13.15189 -12.65135 -12.54722 -12.30317 -12.03064 -11.72891 -11.50286 -11.40676 -11.31739 -10.93617 -10.78304 -10.56255 -10.10246 -9.97968 -9.65786 -9.54401 -9.11263 -8.68285 -6.25035 -4.27643 2.48595 3.13283 3.15786 3.28593 3.30688 3.37578 3.71345 4.04293 4.23716 4.24687 4.47159 4.71382 4.96755 5.03991 5.13065 5.35088 5.46586 5.75482 5.76308 5.78950 5.86858 5.94654 6.39254 6.50771 6.61455 6.67588 7.01385 7.31969 7.48517 8.18921 8.55056 8.82608 9.31566 10.86995 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.037917 B = 0.005676 C = 0.005346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.279159 B = 4931.497212 C = 5236.591548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.148 4.148 3 C 0.197 3.803 4 H 0.047 0.953 5 C -0.527 4.527 6 H 0.088 0.912 7 C 0.080 3.920 8 N -0.887 5.887 9 Si 0.877 3.123 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.261 1.261 13 O -0.333 6.333 14 C 0.485 3.515 15 O -0.516 6.516 16 C -0.143 4.143 17 H 0.139 0.861 18 C -0.125 4.125 19 C -0.198 4.198 20 H 0.146 0.854 21 C 0.295 3.705 22 F -0.199 7.199 23 F -0.204 7.204 24 H 0.042 0.958 25 H 0.055 0.945 26 H 0.044 0.956 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.270 0.730 30 H 0.120 0.880 31 H 0.112 0.888 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.445 4.657 -8.497 18.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.186 4.186 3 C 0.143 3.857 4 H 0.065 0.935 5 C -0.564 4.564 6 H 0.106 0.894 7 C -0.123 4.123 8 N -0.524 5.524 9 Si 0.706 3.294 10 H -0.199 1.199 11 H -0.216 1.216 12 H -0.185 1.185 13 O -0.248 6.248 14 C 0.327 3.673 15 O -0.407 6.407 16 C -0.162 4.162 17 H 0.157 0.843 18 C -0.162 4.162 19 C -0.217 4.217 20 H 0.164 0.836 21 C 0.241 3.759 22 F -0.181 7.181 23 F -0.185 7.185 24 H 0.061 0.939 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.138 0.862 31 H 0.130 0.870 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -15.396 4.597 -8.085 17.987 hybrid contribution -0.250 -0.457 0.872 1.016 sum -15.646 4.140 -7.212 17.719 Atomic orbital electron populations 1.21897 0.97046 1.00019 1.01660 1.22367 0.94321 0.99581 1.02323 1.21017 0.96430 0.88089 0.80147 0.93527 1.20796 0.87677 1.39993 1.07954 0.89441 1.24731 0.94957 0.95263 0.97345 1.69835 1.08486 1.44237 1.29794 0.86995 0.80995 0.80100 0.81323 1.19902 1.21615 1.18546 1.86493 1.33872 1.61997 1.42463 1.22101 0.80720 0.76461 0.87973 1.90602 1.55836 1.58810 1.35442 1.21751 0.92847 1.03719 0.97862 0.84345 1.23141 0.97474 0.95485 1.00121 1.23597 1.01473 0.92836 1.03750 0.83585 1.21250 0.92544 0.86598 0.75505 1.93026 1.70011 1.66364 1.88657 1.92968 1.96015 1.94448 1.35110 0.93869 0.92556 0.93698 0.91135 0.91717 0.92022 0.86205 0.87017 0.86116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 8.57 37.16 0.32 -2.54 16 2 C -0.15 -3.33 5.15 -26.73 -0.14 -3.46 16 3 C 0.20 4.93 1.84 -27.88 -0.05 4.88 16 4 H 0.05 1.23 6.21 -51.93 -0.32 0.91 16 5 C -0.53 -15.12 9.48 -34.44 -0.33 -15.45 16 6 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 7 C 0.08 2.31 5.45 -17.82 -0.10 2.21 16 8 N -0.89 -26.67 13.96 55.43 0.77 -25.90 16 9 Si 0.88 21.53 24.41 -169.99 -4.15 17.38 16 10 H -0.27 -6.40 6.83 56.52 0.39 -6.01 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.26 -6.29 6.53 56.52 0.37 -5.92 16 13 O -0.33 -7.60 9.81 -39.26 -0.39 -7.98 16 14 C 0.48 9.39 6.20 36.00 0.22 9.61 16 15 O -0.52 -10.80 13.40 -18.75 -0.25 -11.05 16 16 C -0.14 -2.05 5.95 -91.77 -0.55 -2.59 16 17 H 0.14 1.92 8.14 -51.93 -0.42 1.49 16 18 C -0.13 -1.33 9.62 -26.73 -0.26 -1.59 16 19 C -0.20 -2.19 5.67 -90.62 -0.51 -2.70 16 20 H 0.15 1.62 7.67 -51.93 -0.40 1.22 16 21 C 0.29 2.79 5.67 37.15 0.21 3.00 16 22 F -0.20 -2.48 17.29 2.25 0.04 -2.44 16 23 F -0.20 -2.14 15.91 2.25 0.04 -2.10 16 24 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.06 1.12 7.80 -51.93 -0.40 0.72 16 26 H 0.04 0.82 6.06 -51.93 -0.31 0.50 16 27 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 28 H 0.06 1.50 3.22 -51.93 -0.17 1.33 16 29 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 30 H 0.12 1.07 7.22 -51.93 -0.37 0.69 16 31 H 0.11 1.15 8.14 -51.92 -0.42 0.73 16 32 H 0.12 0.67 8.14 -51.92 -0.42 0.25 16 LS Contribution 274.08 15.07 4.13 4.13 Total: -1.00 -31.73 274.08 -4.69 -36.42 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -3.70 Total: 0.18 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: -1.18 Total: -8.63 kcal Atomic # 7 Polarization: -26.67 SS G_CDS: 0.77 Total: -25.90 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.64 Total: -19.03 kcal Atomic # 9 Polarization: -4.62 SS G_CDS: 0.07 Total: -4.55 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.15 Total: 17.38 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -31.73 -4.69 -36.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000802218512.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.284 kcal (2) G-P(sol) polarization free energy of solvation -31.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds