Wall clock time and date at job start Mon Mar 30 2020 05:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31513 * 119.99969 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 119.99840 * 359.97438 * 7 5 3 10 10 H 1.48497 * 109.47167 * 89.99961 * 9 7 5 11 11 H 1.48500 * 109.47028 * 210.00109 * 9 7 5 12 12 H 1.48497 * 109.47377 * 330.00144 * 9 7 5 13 13 O 1.45198 * 109.46884 * 294.99515 * 3 2 1 14 14 C 1.34232 * 116.99973 * 90.00459 * 13 3 2 15 15 O 1.20828 * 120.00187 * 359.97438 * 14 13 3 16 16 C 1.50697 * 120.00321 * 180.02562 * 14 13 3 17 17 H 1.09000 * 115.54779 * 325.66670 * 16 14 13 18 18 C 1.53001 * 117.50411 * 111.37588 * 16 14 13 19 19 C 1.52998 * 60.00265 * 107.48993 * 18 16 14 20 20 H 1.09002 * 117.52014 * 252.52250 * 19 18 16 21 21 C 1.52994 * 117.49579 * 107.48795 * 19 18 16 22 22 F 1.39900 * 109.47464 * 231.37595 * 21 19 18 23 23 F 1.39900 * 109.47440 * 351.38146 * 21 19 18 24 24 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 26 26 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 27 27 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 28 28 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 29 29 H 0.96999 * 119.99716 * 179.97438 * 8 7 5 30 30 H 1.08997 * 117.50103 * 214.98664 * 18 16 14 31 31 H 1.09008 * 117.49627 * 359.97438 * 18 16 14 32 32 H 1.09009 * 109.46854 * 111.38181 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 5.4539 0.8806 1.3364 9 14 3.0963 0.1102 2.5707 10 1 2.8744 -1.3258 2.2647 11 1 3.7941 0.2362 3.8755 12 1 1.7881 0.8095 2.6395 13 8 1.6559 2.0916 -1.2407 14 6 0.4727 2.7254 -1.2561 15 8 -0.2193 2.7370 -0.2657 16 6 0.0069 3.4214 -2.5089 17 1 0.7913 3.8795 -3.1115 18 6 -1.1917 2.8214 -3.2465 19 6 -1.3506 4.1257 -2.4627 20 1 -1.9066 4.0859 -1.5260 21 6 -1.5033 5.4186 -3.2663 22 9 -0.5804 6.3647 -2.8076 23 9 -1.2687 5.1566 -4.6204 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 5.8769 0.4828 2.1133 30 1 -1.1960 2.8843 -4.3347 31 1 -1.6432 1.9228 -2.8258 32 1 -2.5142 5.8069 -3.1412 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000802218512.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:16 Heat of formation + Delta-G solvation = -186.508310 kcal Electronic energy + Delta-G solvation = -18495.894926 eV Core-core repulsion = 15092.460596 eV Total energy + Delta-G solvation = -3403.434330 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.92223 -47.93065 -41.69127 -38.71820 -37.10200 -35.55755 -33.94909 -29.93695 -28.67230 -26.09839 -24.62284 -22.76068 -22.09353 -21.15249 -19.56886 -18.80717 -18.35474 -18.05705 -17.64689 -17.39451 -17.12742 -16.39037 -15.39040 -15.06670 -14.85671 -14.62378 -14.32332 -14.22420 -13.96878 -13.77228 -13.34559 -13.30639 -13.16108 -13.06288 -12.58371 -12.30105 -12.05376 -11.88590 -11.67849 -11.58964 -11.44702 -11.28009 -11.16083 -10.76819 -8.47444 -6.56801 1.08099 1.21061 1.28785 1.38687 1.75072 2.17148 2.37208 2.84435 2.86889 3.28150 3.34051 3.48248 3.71872 4.01274 4.07044 4.15580 4.17648 4.24463 4.30924 4.53779 4.62759 4.79898 4.91756 4.93393 4.94727 5.01865 5.30029 5.32975 5.63161 6.11649 6.47136 6.85062 7.08436 8.68725 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.037917 B = 0.005676 C = 0.005346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.279159 B = 4931.497212 C = 5236.591548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.147 4.147 3 C 0.201 3.799 4 H 0.030 0.970 5 C -0.545 4.545 6 H 0.043 0.957 7 C 0.030 3.970 8 N -0.930 5.930 9 Si 0.940 3.060 10 H -0.248 1.248 11 H -0.283 1.283 12 H -0.255 1.255 13 O -0.353 6.353 14 C 0.480 3.520 15 O -0.534 6.534 16 C -0.176 4.176 17 H 0.137 0.863 18 C -0.098 4.098 19 C -0.182 4.182 20 H 0.149 0.851 21 C 0.293 3.707 22 F -0.220 7.220 23 F -0.209 7.209 24 H 0.076 0.924 25 H 0.047 0.953 26 H 0.050 0.950 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.276 0.724 30 H 0.142 0.858 31 H 0.119 0.881 32 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.450 4.033 -8.765 20.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.184 4.184 3 C 0.147 3.853 4 H 0.048 0.952 5 C -0.583 4.583 6 H 0.061 0.939 7 C -0.170 4.170 8 N -0.568 5.568 9 Si 0.765 3.235 10 H -0.173 1.173 11 H -0.210 1.210 12 H -0.179 1.179 13 O -0.269 6.269 14 C 0.325 3.675 15 O -0.425 6.425 16 C -0.195 4.195 17 H 0.155 0.845 18 C -0.135 4.135 19 C -0.201 4.201 20 H 0.167 0.833 21 C 0.240 3.760 22 F -0.201 7.201 23 F -0.190 7.190 24 H 0.095 0.905 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.091 0.909 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.160 0.840 31 H 0.138 0.862 32 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -18.417 3.979 -8.378 20.620 hybrid contribution 0.723 -0.169 0.864 1.139 sum -17.694 3.810 -7.514 19.597 Atomic orbital electron populations 1.21815 0.94186 1.02193 1.01528 1.22265 0.96837 0.97121 1.02188 1.20693 0.93891 0.90002 0.80764 0.95182 1.21004 0.89862 1.40091 1.07294 0.93889 1.25596 0.96152 0.95512 0.99700 1.69964 1.10454 1.45371 1.31016 0.85972 0.79246 0.80335 0.77947 1.17330 1.20951 1.17886 1.86481 1.36226 1.62901 1.41259 1.22993 0.79270 0.75662 0.89538 1.90576 1.55919 1.59455 1.36529 1.21769 0.94663 1.06433 0.96649 0.84496 1.23328 0.93421 0.95550 1.01173 1.23780 0.97964 0.94057 1.04275 0.83311 1.21737 0.94156 0.85432 0.74694 1.92990 1.71131 1.67051 1.88921 1.92959 1.96169 1.94428 1.35490 0.90481 0.93403 0.93137 0.90868 0.92223 0.91483 0.83961 0.86228 0.81141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.00 8.57 71.98 0.62 -4.39 16 2 C -0.15 -6.40 5.15 30.60 0.16 -6.24 16 3 C 0.20 10.21 1.84 29.85 0.05 10.26 16 4 H 0.03 1.62 6.21 -2.39 -0.01 1.61 16 5 C -0.54 -32.60 9.48 25.60 0.24 -32.36 16 6 H 0.04 2.86 8.06 -2.91 -0.02 2.83 16 7 C 0.03 1.77 5.45 84.65 0.46 2.23 16 8 N -0.93 -57.54 13.96 21.45 0.30 -57.24 16 9 Si 0.94 44.27 24.41 68.60 1.67 45.95 16 10 H -0.25 -10.70 6.83 99.48 0.68 -10.02 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.25 -11.66 6.53 99.48 0.65 -11.01 16 13 O -0.35 -16.47 9.81 -51.43 -0.50 -16.97 16 14 C 0.48 18.55 6.20 71.23 0.44 18.99 16 15 O -0.53 -21.99 13.40 21.96 0.29 -21.69 16 16 C -0.18 -4.85 5.95 -11.54 -0.07 -4.92 16 17 H 0.14 3.77 8.14 -2.39 -0.02 3.75 16 18 C -0.10 -1.79 9.62 30.59 0.29 -1.50 16 19 C -0.18 -3.55 5.67 -10.79 -0.06 -3.61 16 20 H 0.15 2.88 7.67 -2.39 -0.02 2.87 16 21 C 0.29 4.64 5.67 71.98 0.41 5.05 16 22 F -0.22 -5.12 17.29 44.97 0.78 -4.34 16 23 F -0.21 -3.76 15.91 44.97 0.72 -3.05 16 24 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 25 H 0.05 1.78 7.80 -2.39 -0.02 1.77 16 26 H 0.05 1.72 6.06 -2.39 -0.01 1.70 16 27 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 28 H 0.06 2.64 3.22 -2.39 -0.01 2.64 16 29 H 0.28 15.70 8.31 -92.71 -0.77 14.93 16 30 H 0.14 1.99 7.22 -2.39 -0.02 1.98 16 31 H 0.12 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.17 1.10 8.14 -2.38 -0.02 1.08 16 Total: -1.00 -71.46 274.08 6.86 -64.60 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: 1.05 Total: 9.23 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: 2.55 Total: -16.48 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: 0.30 Total: -57.24 kcal Atomic # 8 Polarization: -38.45 SS G_CDS: -0.21 Total: -38.66 kcal Atomic # 9 Polarization: -8.88 SS G_CDS: 1.49 Total: -7.38 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.67 Total: 45.95 kcal Total: -71.46 6.86 -64.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000802218512.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.910 kcal (2) G-P(sol) polarization free energy of solvation -71.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds