Wall clock time and date at job start Mon Mar 30 2020 06:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00370 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00431 * 3 2 1 6 6 H 1.48508 * 109.47394 * 150.00196 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47131 * 179.97438 * 11 10 9 13 13 H 1.09007 * 109.46739 * 55.00050 * 12 11 10 14 14 C 1.50698 * 109.47556 * 295.00412 * 12 11 10 15 15 O 1.20826 * 119.99795 * 359.97438 * 14 12 11 16 16 O 1.34228 * 120.00284 * 180.02562 * 14 12 11 17 17 C 1.50703 * 109.47152 * 175.00085 * 12 11 10 18 18 C 1.38226 * 119.99783 * 59.73120 * 17 12 11 19 19 C 1.38238 * 119.99976 * 179.78644 * 18 17 12 20 20 C 1.38241 * 119.99782 * 0.44452 * 19 18 17 21 21 C 1.38235 * 119.99578 * 359.80584 * 20 19 18 22 22 C 1.38230 * 120.00446 * 359.97438 * 21 20 19 23 23 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 25 25 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 26 26 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 27 27 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 28 28 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 29 29 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 30 30 H 0.96700 * 117.00097 * 179.97438 * 16 14 12 31 31 H 1.08001 * 120.00247 * 359.97438 * 18 17 12 32 32 H 1.08003 * 120.00496 * 180.26966 * 19 18 17 33 33 H 1.07994 * 120.00047 * 179.83725 * 20 19 18 34 34 H 1.08007 * 119.99465 * 180.02562 * 21 20 19 35 35 H 1.08004 * 119.99990 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 6 2.4747 -6.1499 -0.0018 13 1 3.1589 -6.0434 0.8401 14 6 3.2576 -6.1409 -1.2895 15 8 3.0421 -5.2917 -2.1215 16 8 4.1936 -7.0768 -1.5125 17 6 1.7254 -7.4517 0.1214 18 6 0.7912 -7.8044 -0.8344 19 6 0.1070 -9.0005 -0.7238 20 6 0.3504 -9.8395 0.3476 21 6 1.2809 -9.4842 1.3061 22 6 1.9683 -8.2903 1.1931 23 1 -0.4851 0.8400 0.0004 24 1 0.6242 -2.5567 -0.8904 25 1 0.6248 -2.5571 0.8896 26 1 2.8721 -3.6042 -0.8905 27 1 2.8721 -3.6043 0.8895 28 1 0.8535 -5.0450 0.8885 29 1 0.8542 -5.0446 -0.8914 30 1 4.6694 -7.0303 -2.3530 31 1 0.5980 -7.1470 -1.6693 32 1 -0.6198 -9.2782 -1.4729 33 1 -0.1860 -10.7727 0.4354 34 1 1.4714 -10.1399 2.1429 35 1 2.6956 -8.0129 1.9418 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821978317.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:23 Heat of formation + Delta-G solvation = -90.706543 kcal Electronic energy + Delta-G solvation = -17419.820484 eV Core-core repulsion = 14574.769961 eV Total energy + Delta-G solvation = -2845.050524 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.55492 -39.00234 -36.27512 -35.00052 -33.19317 -31.34884 -30.97170 -28.57084 -25.87076 -23.22055 -22.79380 -22.28033 -20.25787 -19.84925 -17.96625 -17.01443 -16.61079 -16.14458 -15.71228 -14.87398 -14.69671 -14.40057 -13.92707 -13.46152 -13.35149 -13.14663 -12.52010 -12.45146 -11.86158 -11.77752 -11.43491 -11.23886 -11.12701 -11.04945 -10.78911 -10.50329 -10.42426 -10.22661 -9.44952 -9.27827 -9.00663 -8.98712 -8.69709 -8.26245 -5.92075 -3.93508 1.23180 1.33175 2.38382 3.16023 3.36992 3.42550 3.46204 3.73873 4.51806 4.60305 4.76229 4.91397 5.04851 5.11425 5.25358 5.40666 5.43628 5.51315 5.62347 5.87639 5.94693 6.02913 6.17129 6.37796 6.41838 6.46621 6.52057 6.58106 6.85254 6.90342 7.02942 7.28310 7.77461 7.94745 8.05832 8.10721 8.52931 9.13542 9.69748 11.19480 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.032407 B = 0.004592 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.802631 B = 6096.657975 C = 6513.507341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.053 0.947 9 C 0.024 3.976 10 C -0.119 4.119 11 C -0.100 4.100 12 C -0.039 4.039 13 H 0.113 0.887 14 C 0.481 3.519 15 O -0.492 6.492 16 O -0.519 6.519 17 C -0.071 4.071 18 C -0.110 4.110 19 C -0.118 4.118 20 C -0.123 4.123 21 C -0.120 4.120 22 C -0.106 4.106 23 H 0.259 0.741 24 H 0.016 0.984 25 H 0.014 0.986 26 H 0.065 0.935 27 H 0.043 0.957 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.405 0.595 31 H 0.123 0.877 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.773 -20.545 0.570 20.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.555 4.555 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.157 4.157 11 C -0.137 4.137 12 C -0.059 4.059 13 H 0.131 0.869 14 C 0.322 3.678 15 O -0.377 6.377 16 O -0.331 6.331 17 C -0.071 4.071 18 C -0.128 4.128 19 C -0.136 4.136 20 C -0.141 4.141 21 C -0.139 4.139 22 C -0.124 4.124 23 H 0.069 0.931 24 H 0.034 0.966 25 H 0.032 0.968 26 H 0.083 0.917 27 H 0.062 0.938 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.263 0.737 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.344 -20.196 0.714 20.483 hybrid contribution 0.735 1.007 -0.567 1.370 sum 4.078 -19.189 0.146 19.618 Atomic orbital electron populations 1.69966 1.06022 1.26428 1.51268 1.25017 0.94832 0.99158 0.95506 0.86619 0.79837 0.83618 0.78069 1.20711 1.21270 1.19934 1.21275 0.92996 0.91191 1.50012 0.92837 1.19050 0.93959 0.91271 0.97043 1.21817 0.99516 0.93458 1.00887 1.21682 0.96594 0.92580 1.02859 1.20230 0.96861 0.95100 0.93662 0.86879 1.23392 0.77591 0.77688 0.89088 1.90771 1.64827 1.36106 1.46033 1.84558 1.50147 1.53599 1.44821 1.19509 0.97126 0.94688 0.95793 1.21106 0.95909 0.96804 0.98978 1.21122 0.99730 0.94409 0.98327 1.21152 0.98444 0.99676 0.94816 1.21113 0.96845 0.96760 0.99133 1.21067 0.99656 0.94088 0.97545 0.93117 0.96569 0.96812 0.91686 0.93815 0.90784 0.91215 0.73736 0.85912 0.86004 0.86200 0.86002 0.85718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.81 13.29 55.43 0.74 -27.07 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 22.35 29.54 -169.99 -5.02 17.33 16 4 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 6 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -15.28 9.11 -34.44 -0.31 -15.60 16 8 H 0.05 1.55 7.74 -52.48 -0.41 1.14 16 9 C 0.02 0.64 4.97 -27.88 -0.14 0.50 16 10 C -0.12 -2.59 4.90 -26.73 -0.13 -2.72 16 11 C -0.10 -1.75 4.07 -26.73 -0.11 -1.85 16 12 C -0.04 -0.56 2.48 -92.92 -0.23 -0.79 16 13 H 0.11 1.43 7.88 -51.93 -0.41 1.02 16 14 C 0.48 7.24 6.98 36.00 0.25 7.49 16 15 O -0.49 -9.17 14.73 -18.75 -0.28 -9.44 16 16 O -0.52 -6.13 13.34 -39.25 -0.52 -6.65 16 17 C -0.07 -0.91 4.71 -104.63 -0.49 -1.40 16 18 C -0.11 -1.39 8.87 -39.59 -0.35 -1.75 16 19 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 20 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 21 C -0.12 -1.19 10.05 -39.59 -0.40 -1.59 16 22 C -0.11 -1.18 9.67 -39.59 -0.38 -1.56 16 23 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 1.49 5.96 -51.93 -0.31 1.18 16 27 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.07 1.28 7.37 -51.93 -0.38 0.90 16 30 H 0.40 3.08 9.10 45.56 0.41 3.49 16 31 H 0.12 1.60 7.62 -52.49 -0.40 1.20 16 32 H 0.12 1.07 8.06 -52.48 -0.42 0.64 16 33 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.12 0.91 8.06 -52.48 -0.42 0.48 16 35 H 0.12 1.16 7.95 -52.48 -0.42 0.75 16 LS Contribution 302.24 15.07 4.55 4.55 Total: -1.00 -34.32 302.24 -7.72 -42.04 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -4.00 Total: 0.23 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: -3.19 Total: -20.99 kcal Atomic # 7 Polarization: -27.81 SS G_CDS: 0.74 Total: -27.07 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.80 Total: -16.09 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -34.32 -7.72 -42.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821978317.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.662 kcal (2) G-P(sol) polarization free energy of solvation -34.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds